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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960757
Clone id TST39A01NGRL0008_E10
Library
Length 637
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_E10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GTCTGAAGCTACAAGAGCAAGAGAAGACCTTCAAGAAGTTGATACAGCAAGATCGGATAC
CAAAAAGTGGCCCCTTCCATTTTGTTGCGGAATCTACCGTCTCCACTAGCGGCAATGAAA
ACGTCACCTTTACAAGCTCAAAAACTGCACTAATGCAAAGCTACTTGAAGCATTTATGGT
CTAAGGGCCACATATTGTCCCTGCGGAGAAGCAAAGAAGATGGTGCAGCAAATGATGCTA
GATTGCAGCCCAAGCAAATTCATAACCAGAAAGATCCTTCAAGTCTCCATTGAAGCTGGA
TGGGTGATTCATAATTGCAAAGTTAGGATCAGCTCAATTGGACCCCTACTAACCATTTCT
GGAGCTGGGTTGTACCATGGCACGAATGAATCCCTCTTAATTAACTCTCAGTGAAGAGGC
CAATATGGTGTCCTGGTCTCGAAATTAAAGGACATGATGCAGGTTTTGGAACTTGAAAAT
TGTTGACGTCATAGCGAGGGTTGTATCAATTGTATCATCATTATACCTGTACAGCTGAAG
CAAATAATTGTGGCTTCGAACATCTTCTGATCAAATTGATGTAAAACAAGGATAGAAACT
CAAGAATAAAGCTCTATGTCAGAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P32961
Definition sp|P32961|NRL1_ARATH Nitrilase 1 OS=Arabidopsis thaliana
Align length 43
Score (bit) 32.3
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960757|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_E10, 5'
         (622 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32961|NRL1_ARATH Nitrilase 1 OS=Arabidopsis thaliana GN=NIT1...    32   2.0  
sp|Q24702|DVA1_DICVI DVA-1 polyprotein OS=Dictyocaulus viviparus...    30   7.7  

>sp|P32961|NRL1_ARATH Nitrilase 1 OS=Arabidopsis thaliana GN=NIT1
           PE=1 SV=2
          Length = 346

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 275 IFLVMNLLGLQSSIICCTIFFASPQGQYVALRP*MLQVALH*C 147
           ++LVM  +  +   + CT+ F SPQGQ++     ++  +L  C
Sbjct: 119 VYLVMGAIEKEGYTLYCTVLFFSPQGQFLGKHRKLMPTSLERC 161


>sp|Q24702|DVA1_DICVI DVA-1 polyprotein OS=Dictyocaulus viviparus
            GN=DVA-1 PE=1 SV=1
          Length = 1557

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = +3

Query: 15   EQEKTFKKLIQQ-DRIPKSGPFHFVAESTVSTSGNENVTFTSSKTALMQSYLKHLWSKGH 191
            EQ+   KK+    DR+     ++ V E   S   +E    TS   A  + Y+K    K +
Sbjct: 1301 EQQAQVKKIYGTGDRL---ATYNKVMELFESVPSDEKEKATSQLKAACRHYIKDFIGKDN 1357

Query: 192  ILSLRRSKEDGAANDA 239
            +  ++  KE GA N+A
Sbjct: 1358 LAVIKEMKESGATNEA 1373
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960757|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0008_E10, 5'
         (622 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******