DK960753 |
Clone id |
TST39A01NGRL0008_E06 |
Library |
TST39 |
Length |
693 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0008_E06. 5' end sequence. |
Accession |
DK960753 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3541Contig1 |
Sequence |
CGAACGAGGAGAGAACTTTTGCGTTCTCGTTTGATCAGATCATCTTTCACATCAATCAAC TTTCCAAACTGCGAGATTGCGTCTTCTCCTCAAACAAAATAGCGGTAAGCAGAGATGGGC TAGAGCTTTCTGGGCCGCACTTGGCTGTGGCCAAGTCTGGAGCTTCAGCAAGCACTCAGC ATTGCTTACTTCAAATTTTGAGCCTATTTTCGGCCAATCCAGCAGAATAAGTCACTCTGC GGGGTAAATCTTGCTCGCTCAATTCCTCTGTCTCATTCACATCTCTGCTAAATTAAGCAG AGGGAGCCCCTTAAGATGAATCCTCTCTGGTTAGGCTCCTAAGTTTGCGCAGGGCACGCG TATCAGGCTTGCAACTCACCATTTTTACTCTTTGGGGTCCTCTTGGAAGACAACCTATAA GCATGCATGTAAGGATTCGAAAGCCATGGATATCACTAGTAACGCTGGAGCAGAGAAGGA AGAATGTGTCAGCACCAAGACTTGGTCAGACCAAGAGAAGGGTTTTCGAGCCTATGCTCA ACAACAGCTACATCAAAGAGCCTCCGGCAAAGCAAGACATCCTCCCCGGTTGATTGTCAA CCGTCCAATTTTGGTCAAACTGACAAAGGAGATTGTGGAAACTTTCCAAATGTGCAATCC TTCCTATACATTTCCAGAACCATTAAATTCAAA |
■■Homology search results ■■ |
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Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9U572 |
Definition |
sp|Q9U572|CLOT_PENMO Hemolymph clottable protein OS=Penaeus monodon |
Align length |
62 |
Score (bit) |
35.0 |
E-value |
0.38 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960753|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_E06, 5' (693 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9U572|CLOT_PENMO Hemolymph clottable protein OS=Penaeus mono... 35 0.38 sp|P04774|SCN1A_RAT Sodium channel protein type 1 subunit alpha ... 34 0.86 sp|P35498|SCN1A_HUMAN Sodium channel protein type 1 subunit alph... 34 0.86 sp|Q9NY46|SCN3A_HUMAN Sodium channel protein type 3 subunit alph... 33 1.5 sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha ... 32 2.5 sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha ... 32 4.2 sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alph... 32 4.2 sp|Q99P77|NOG1_RAT Nucleolar GTP-binding protein 1 OS=Rattus nor... 31 5.5 sp|Q479U3|OSTA_DECAR LPS-assembly protein OS=Dechloromonas aroma... 31 7.2 sp|Q7VN28|SURE_HAEDU 5'-nucleotidase surE OS=Haemophilus ducreyi... 30 9.4 sp|A5V9W3|G6PI_SPHWW Glucose-6-phosphate isomerase OS=Sphingomon... 30 9.4
>sp|Q9U572|CLOT_PENMO Hemolymph clottable protein OS=Penaeus monodon PE=1 SV=1 Length = 1670
Score = 35.0 bits (79), Expect = 0.38 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%) Frame = +1
Query: 514 REGFSSLCSTTATSK--SLRQSKTSSPVDCQPSNFGQTDKGDCGNFPNVQSFLY-ISRTI 684 R+ +SS +T SK S SKTSS + S G+T G N P+++ L+ + RT Sbjct: 193 RDAYSSSYTTKTKSKTSSKTSSKTSSKTSSKTSKTGKTSPGQLANVPHIEDTLWSVRRTT 252
Query: 685 KF 690 F Sbjct: 253 DF 254
>sp|P04774|SCN1A_RAT Sodium channel protein type 1 subunit alpha OS=Rattus norvegicus GN=Scn1a PE=2 SV=1 Length = 2009
Score = 33.9 bits (76), Expect = 0.86 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +1
Query: 580 SSPVDCQPS--NFGQTDKGDCGNFPNVQSFLYISRTI 684 S P DC P+ N G + KGDCGN P+V F ++S I Sbjct: 1736 SKPPDCDPNKVNPGSSVKGDCGN-PSVGIFFFVSYII 1771
>sp|P35498|SCN1A_HUMAN Sodium channel protein type 1 subunit alpha OS=Homo sapiens GN=SCN1A PE=1 SV=2 Length = 2009
Score = 33.9 bits (76), Expect = 0.86 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 2/37 (5%) Frame = +1
Query: 580 SSPVDCQPS--NFGQTDKGDCGNFPNVQSFLYISRTI 684 S P DC P+ N G + KGDCGN P+V F ++S I Sbjct: 1736 SKPPDCDPNKVNPGSSVKGDCGN-PSVGIFFFVSYII 1771
>sp|Q9NY46|SCN3A_HUMAN Sodium channel protein type 3 subunit alpha OS=Homo sapiens GN=SCN3A PE=1 SV=2 Length = 2000
Score = 33.1 bits (74), Expect = 1.5 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +1
Query: 580 SSPVDCQPSNF--GQTDKGDCGNFPNVQSFLYISRTI 684 S+P DC P G + KGDCGN P+V F ++S I Sbjct: 1721 SAPPDCDPDTIHPGSSVKGDCGN-PSVGIFFFVSYII 1756
>sp|P08104|SCN3A_RAT Sodium channel protein type 3 subunit alpha OS=Rattus norvegicus GN=Scn3a PE=1 SV=1 Length = 1951
Score = 32.3 bits (72), Expect = 2.5 Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = +1
Query: 580 SSPVDCQPSNF--GQTDKGDCGNFPNVQSFLYISRTI 684 S+P DC P G + KGDCGN P+V F ++S I Sbjct: 1672 SAPPDCDPDAIHPGSSVKGDCGN-PSVGIFFFVSYII 1707
>sp|P04775|SCN2A_RAT Sodium channel protein type 2 subunit alpha OS=Rattus norvegicus GN=Scn2a PE=1 SV=1 Length = 2005
Score = 31.6 bits (70), Expect = 4.2 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = +1
Query: 580 SSPVDCQPSNF--GQTDKGDCGNFPNVQSFLYISRTI 684 S P DC P G + KGDCGN P+V F ++S I Sbjct: 1726 SGPPDCDPEKDHPGSSVKGDCGN-PSVGIFFFVSYII 1761
>sp|Q99250|SCN2A_HUMAN Sodium channel protein type 2 subunit alpha OS=Homo sapiens GN=SCN2A PE=1 SV=3 Length = 2005
Score = 31.6 bits (70), Expect = 4.2 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = +1
Query: 580 SSPVDCQPSNF--GQTDKGDCGNFPNVQSFLYISRTI 684 S P DC P G + KGDCGN P+V F ++S I Sbjct: 1726 SGPPDCDPDKDHPGSSVKGDCGN-PSVGIFFFVSYII 1761
>sp|Q99P77|NOG1_RAT Nucleolar GTP-binding protein 1 OS=Rattus norvegicus GN=Gtpbp4 PE=2 SV=3 Length = 637
Score = 31.2 bits (69), Expect = 5.5 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 12/60 (20%) Frame = +3
Query: 402 LGRQPISMHVRIRKPW------------ISLVTLEQRRKNVSAPRLGQTKRRVFEPMLNN 545 LG P+S+ V+ RK W L L+ + KN PR+ +T ++V L N Sbjct: 464 LGSMPVSLRVKTRKWWKIRQLAKQIREKKKLKILQSKEKNTQGPRMPRTAKKVQRADLEN 523
>sp|Q479U3|OSTA_DECAR LPS-assembly protein OS=Dechloromonas aromatica (strain RCB) GN=imp PE=3 SV=1 Length = 849
Score = 30.8 bits (68), Expect = 7.2 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%) Frame = +3
Query: 69 LRDCVFSSNKIAVSRDGLELSGPH----LAVAKSGASASTQHCLLQILSLFSANPAE*VT 236 L D V ++ + + +DG E+SGPH LA A T H + ++ S F A P + V Sbjct: 140 LEDEVEATGSVRMLQDGAEISGPHMRMKLADQIGSAEQVTYHIVKEVPSRFYA-PQQTVV 198
Query: 237 LRGKSCSLNSSVSFTSLLN*AEGAP 311 S + NS ++ + G P Sbjct: 199 TVASSNATNSGAPMMLNVSNSYGLP 223
>sp|Q7VN28|SURE_HAEDU 5'-nucleotidase surE OS=Haemophilus ducreyi GN=surE PE=3 SV=1 Length = 253
Score = 30.4 bits (67), Expect = 9.4 Identities = 18/48 (37%), Positives = 25/48 (52%) Frame = +3
Query: 18 FAFSFDQIIFHINQLSKLRDCVFSSNKIAVSRDGLELSGPHLAVAKSG 161 F SFD ++ IN + L D V S +A + +G L P LAV+ G Sbjct: 81 FETSFDLVVSGINHGANLGDDVVYSGTVAAALEGRHLRLPSLAVSLVG 128
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TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8DR94 |
Definition |
tr|A8DR94|A8DR94_PENVA Hemolymph clottable protein OS=Penaeus vannamei |
Align length |
60 |
Score (bit) |
42.4 |
E-value |
0.029 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960753|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0008_E06, 5' (693 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A8DR94|A8DR94_PENVA Hemolymph clottable protein OS=Penaeus va... 42 0.029 tr|Q9FGC1|Q9FGC1_ARATH Protein kinase-like OS=Arabidopsis thalia... 39 0.31 tr|Q8RWH3|Q8RWH3_ARATH Putative uncharacterized protein At5g3598... 39 0.31 tr|Q56YT6|Q56YT6_ARATH Protein kinase-like OS=Arabidopsis thalia... 39 0.31 tr|A7PAY9|A7PAY9_VITVI Chromosome chr16 scaffold_10, whole genom... 39 0.41 tr|B8AH87|B8AH87_ORYSI Putative uncharacterized protein OS=Oryza... 37 1.6 tr|B5KMA2|B5KMA2_PENMO Clottable protein 2 OS=Penaeus monodon PE... 37 1.6 tr|Q7XTQ2|Q7XTQ2_ORYSJ Os04g0602800 protein OS=Oryza sativa subs... 36 2.7 tr|Q01HS6|Q01HS6_ORYSA B0403H10-OSIGBa0105A11.22 protein OS=Oryz... 36 2.7 tr|B8ATX0|B8ATX0_ORYSI Putative uncharacterized protein OS=Oryza... 36 2.7 tr|A9TA59|A9TA59_PHYPA Predicted protein OS=Physcomitrella paten... 36 2.7 tr|A3AX46|A3AX46_ORYSJ Putative uncharacterized protein OS=Oryza... 36 2.7 tr|A9SXG3|A9SXG3_PHYPA Predicted protein (Fragment) OS=Physcomit... 35 4.5 tr|B1VTF8|B1VTF8_STRGG Putative M23-family peptidase OS=Streptom... 35 5.9 tr|A9U0E5|A9U0E5_PHYPA Predicted protein OS=Physcomitrella paten... 34 7.7
>tr|A8DR94|A8DR94_PENVA Hemolymph clottable protein OS=Penaeus vannamei PE=2 SV=1 Length = 1666
Score = 42.4 bits (98), Expect = 0.029 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Frame = +1
Query: 514 REGFSSLCSTTATSKSLRQSKTSSPVDCQPSNFGQTDKGDCGNFPNVQSFLY-ISRTIKF 690 R+ +SS +T TSK+ + SKTSS + S G+T G N P+++ L+ I RT F Sbjct: 193 RDAYSSSYTTKTTSKTSKSSKTSSKTPSKTSKTGKTSPGQLANVPHIEDTLWSIRRTTDF 252
>tr|Q9FGC1|Q9FGC1_ARATH Protein kinase-like OS=Arabidopsis thaliana PE=4 SV=1 Length = 787
Score = 38.9 bits (89), Expect = 0.31 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%) Frame = +2
Query: 449 DITSNAGAEKEEC-------VSTKTWSDQEKGFRAYAQQQLHQRASGKARHPPRLIVNRP 607 DI S+ GA VST W + F+ Y L Q S H + V +P Sbjct: 3 DIDSSDGAAAARAGEIGSIGVSTP-WKPIQLVFKRY----LPQNGSASKVH---VAVKKP 54
Query: 608 ILVKLTKEIVETFQMCNPSYTFPEPLN 688 ++V+LT+++VET+++C+P + + LN Sbjct: 55 VVVRLTRDLVETYKICDPQFKYRGELN 81
>tr|Q8RWH3|Q8RWH3_ARATH Putative uncharacterized protein At5g35980At5g35990 (Protein kinase like protein) (At5g35980) OS=Arabidopsis thaliana GN=At5g35980At5g35990 PE=2 SV=1 Length = 956
Score = 38.9 bits (89), Expect = 0.31 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%) Frame = +2
Query: 449 DITSNAGAEKEEC-------VSTKTWSDQEKGFRAYAQQQLHQRASGKARHPPRLIVNRP 607 DI S+ GA VST W + F+ Y L Q S H + V +P Sbjct: 3 DIDSSDGAAAARAGEIGSIGVSTP-WKPIQLVFKRY----LPQNGSASKVH---VAVKKP 54
Query: 608 ILVKLTKEIVETFQMCNPSYTFPEPLN 688 ++V+LT+++VET+++C+P + + LN Sbjct: 55 VVVRLTRDLVETYKICDPQFKYRGELN 81
>tr|Q56YT6|Q56YT6_ARATH Protein kinase-like OS=Arabidopsis thaliana GN=At5g35980 PE=2 SV=1 Length = 518
Score = 38.9 bits (89), Expect = 0.31 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 7/87 (8%) Frame = +2
Query: 449 DITSNAGAEKEEC-------VSTKTWSDQEKGFRAYAQQQLHQRASGKARHPPRLIVNRP 607 DI S+ GA VST W + F+ Y L Q S H + V +P Sbjct: 3 DIDSSDGAAAARAGEIGSIGVSTP-WKPIQLVFKRY----LPQNGSASKVH---VAVKKP 54
Query: 608 ILVKLTKEIVETFQMCNPSYTFPEPLN 688 ++V+LT+++VET+++C+P + + LN Sbjct: 55 VVVRLTRDLVETYKICDPQFKYRGELN 81
>tr|A7PAY9|A7PAY9_VITVI Chromosome chr16 scaffold_10, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00013878001 PE=4 SV=1 Length = 310
Score = 38.5 bits (88), Expect = 0.41 Identities = 14/27 (51%), Positives = 22/27 (81%) Frame = +2
Query: 608 ILVKLTKEIVETFQMCNPSYTFPEPLN 688 ++ +LTK+IVET+Q+CNP + + E LN Sbjct: 17 LVARLTKDIVETYQICNPQFKYSEELN 43
>tr|B8AH87|B8AH87_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_08603 PE=4 SV=1 Length = 855
Score = 36.6 bits (83), Expect = 1.6 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = +2
Query: 536 AQQQLHQRASGKARHPPRL--IVNRPILVKLTKEIVETFQMCNPSYTFPEPLN 688 A L R +G A L + RP + +LT +IV+TF CNP + + + LN Sbjct: 35 AGASLSGRRNGLAARSSNLSSVRKRPFVARLTTDIVQTFGKCNPEFKYSDSLN 87
>tr|B5KMA2|B5KMA2_PENMO Clottable protein 2 OS=Penaeus monodon PE=2 SV=1 Length = 1667
Score = 36.6 bits (83), Expect = 1.6 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Frame = +1
Query: 514 REGFSSLCSTTATSKSLRQSKTSSPVDCQPSNFGQTDKGDCGNFPNVQSFLY-ISRTIKF 690 R+ +SS +T A SK+ SKTSS + S G+T G N P+++ L+ + RT F Sbjct: 193 RDAYSSSYTTKAKSKT--SSKTSSKTSSKTSKTGKTSPGQLANVPHIEDTLWSVRRTTDF 250
>tr|Q7XTQ2|Q7XTQ2_ORYSJ Os04g0602800 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0041A02.17 PE=2 SV=2 Length = 924
Score = 35.8 bits (81), Expect = 2.7 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +2
Query: 593 IVNRPILVKLTKEIVETFQMCNPSYTFPEPLN 688 + +P + +LT +I++TF CNP++ + E LN Sbjct: 56 VKRKPFVARLTADIIQTFVRCNPAFKYSESLN 87
>tr|Q01HS6|Q01HS6_ORYSA B0403H10-OSIGBa0105A11.22 protein OS=Oryza sativa GN=B0403H10-OSIGBa0105A11.22 PE=4 SV=1 Length = 924
Score = 35.8 bits (81), Expect = 2.7 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +2
Query: 593 IVNRPILVKLTKEIVETFQMCNPSYTFPEPLN 688 + +P + +LT +I++TF CNP++ + E LN Sbjct: 56 VKRKPFVARLTADIIQTFVRCNPAFKYSESLN 87
>tr|B8ATX0|B8ATX0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_17274 PE=4 SV=1 Length = 924
Score = 35.8 bits (81), Expect = 2.7 Identities = 12/32 (37%), Positives = 22/32 (68%) Frame = +2
Query: 593 IVNRPILVKLTKEIVETFQMCNPSYTFPEPLN 688 + +P + +LT +I++TF CNP++ + E LN Sbjct: 56 VKRKPFVARLTADIIQTFVRCNPAFKYSESLN 87
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