NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960623
Clone id TST39A01NGRL0007_O18
Library
Length 672
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_O18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
TCTCCTTTGTGTTATATATATATTGGATTGATACCCATGTTGGTCTCTTCTCCTTCCCTG
CGGAGTCGACCTTGTTACGCCATAGCCAGGACCCTGCGAACTTGGATCTCTCAACATTTG
TGCGCCCATAAGTTATCCTGCGTACGCGACCCTTCGCCAACTAGGGTTTTCTATGGGTCT
GCAGATCAGATAGCTGCTGGCTATGGTGGGCTTGCAGCCTGGCGAGTAGAGAATTTGCAC
AGGGGGATTGGGTTCTTTTATGGAAACTCGGAGTCGTAAGAGGGCGGAGGCCACTGGAGA
TAGGCCATCGCCCAACAGCAAAAACGGTAACAGCGCTAGTAACAAGAGGGCTCGCCTCTC
CGCCCCTACCCCACCTCTTCCTCTCCCTCTTCCTCGCCTCCCTCCTCGCTCTGCATCGTC
TCGGCTGCATCCCACCATTGTCACTGTGTCGCGGACTCAAGAGATAACTATGGACTCTCC
CTCCCTCCCTTCGTCATCTTCTGGTTCAAAGCATGCAAAGAAAGAGCTCGATAAAGATGA
TGATCATATACGCAAAGCCTCTTCTCGAGAAAAGGAGGCCGAGAAGGGCAAAGAGAAGGA
GATGCGTGGTTCAGAGCGTGACAGACCCGCATCTCACCTAGATGATGATCATCATGATGA
AGGTAACAGTAA
■■Homology search results ■■ -
sp_hit_id Q9QYX7
Definition sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus
Align length 96
Score (bit) 33.1
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960623|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_O18, 5'
         (672 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=...    33   1.4  
sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3 OS=Arabido...    32   4.0  
sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=...    32   4.0  
sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo ...    31   6.8  

>sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=1
            SV=3
          Length = 5038

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
 Frame = -1

Query: 300  SPVASALLRLRVSIKEPNPPVQILYSPGCKPTIASSYLICRPIENPSWRRVAYAG*LMGA 121
            S V+S  ++    I     P+  + +P  +  + +   I + I  P      Y G  +G 
Sbjct: 3410 SKVSSVAVQTVAEISVQTEPLGTIRTPSIRARVDAKVEIIKHISAPE---KTYKGGSLGC 3466

Query: 120  QMLRDPSSQGPGYGVTRSTPQGRRRD---QHGYQSN 22
            Q   DP +Q P Y    S P+ ++R    + GY S+
Sbjct: 3467 QTETDPDTQSPPYMGATSPPKDKKRPTPLEIGYSSS 3502


>sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3
           OS=Arabidopsis thaliana GN=UPL3 PE=1 SV=1
          Length = 1888

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +2

Query: 260 METRSRKRAEATGDRPSPNSKN 325
           METRSRKRAEAT   PS +S +
Sbjct: 1   METRSRKRAEATSAAPSSSSSS 22


>sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1
            SV=3
          Length = 5183

 Score = 31.6 bits (70), Expect = 4.0
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
 Frame = -1

Query: 300  SPVASALLRLRVSIKEPNPPVQILYSPGCKPTIASSYLICRPIENPSWRRVAYAG*LMGA 121
            S V+S  ++    I     PV  + +P  +  + +   I + I  P      Y G  +G 
Sbjct: 3442 SKVSSIAVQTVAEISVQTEPVGTIRTPSIRARVDAKVEIIKHISAPE---KTYKGGSLGC 3498

Query: 120  QMLRDPSSQGPGYGVTRSTPQGRRRD---QHGYQSNI 19
            Q   D  +Q P Y    S P+ ++R    + GY S++
Sbjct: 3499 QTEADSDTQSPQYLSATSPPKDKKRPTPLEIGYSSHL 3535


>sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo PE=1
            SV=1
          Length = 5085

 Score = 30.8 bits (68), Expect = 6.8
 Identities = 24/96 (25%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = -1

Query: 300  SPVASALLRLRVSIKEPNPPVQILYSPGCKPTIASSYLICRPIENPSWRRVAYAG*LMGA 121
            S V+S  ++    I     PV  + +P  +  + +   I + I  P      Y G  +G 
Sbjct: 3456 SKVSSVAVQTVAEISVQTEPVGTIRTPSIRARVDAKVEIIKHISAPE---KTYKGGSLGC 3512

Query: 120  QMLRDPSSQGPGYGVTRSTPQGRRRD---QHGYQSN 22
            Q   D  +Q P Y    S P+ ++R    + GY S+
Sbjct: 3513 QTETDSDTQSPPYLGATSPPKDKKRPTPLEIGYSSS 3548
tr_hit_id A9SC66
Definition tr|A9SC66|A9SC66_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 21
Score (bit) 34.7
E-value 5.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960623|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_O18, 5'
         (672 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SC66|A9SC66_PHYPA Predicted protein (Fragment) OS=Physcomit...    35   5.6  
tr|Q9VVM4|Q9VVM4_DROME CG7402 OS=Drosophila melanogaster GN=CG74...    34   7.3  
tr|Q8MR36|Q8MR36_DROME HL07902p OS=Drosophila melanogaster GN=CG...    34   7.3  

>tr|A9SC66|A9SC66_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_77373 PE=4 SV=1
          Length = 309

 Score = 34.7 bits (78), Expect = 5.6
 Identities = 16/21 (76%), Positives = 16/21 (76%)
 Frame = +2

Query: 251 GSFMETRSRKRAEATGDRPSP 313
           G FMETRS KR EAT  RPSP
Sbjct: 71  GYFMETRSHKRVEATTHRPSP 91


>tr|Q9VVM4|Q9VVM4_DROME CG7402 OS=Drosophila melanogaster GN=CG7402
           PE=2 SV=1
          Length = 579

 Score = 34.3 bits (77), Expect = 7.3
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = -3

Query: 313 GRWPISSGLR--PLTTPSFHKRTQSPCANSLLARLQAHHSQQLSD-LQTHRKP*LAKGRV 143
           G+ P+ S  +  PL  P F    + PC    LA++     QQL+D L+  RK  +   RV
Sbjct: 469 GQNPLESHFKCEPLKAPCFFDLAKDPCERYNLAQMYPLQLQQLADELEQIRKTAIPSARV 528

Query: 142 RRITYGRTNVERSKFAGSWLWRNKVDS 62
               +  +    +   G+W W N  D+
Sbjct: 529 ---PHSDSRANPTFHNGNWEWWNNTDT 552


>tr|Q8MR36|Q8MR36_DROME HL07902p OS=Drosophila melanogaster
           GN=CG7402 PE=2 SV=1
          Length = 365

 Score = 34.3 bits (77), Expect = 7.3
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
 Frame = -3

Query: 313 GRWPISSGLR--PLTTPSFHKRTQSPCANSLLARLQAHHSQQLSD-LQTHRKP*LAKGRV 143
           G+ P+ S  +  PL  P F    + PC    LA++     QQL+D L+  RK  +   RV
Sbjct: 255 GQNPLESHFKCEPLKAPCFFDLAKDPCERYNLAQMYPLQLQQLADELEQIRKTAIPSARV 314

Query: 142 RRITYGRTNVERSKFAGSWLWRNKVDS 62
               +  +    +   G+W W N  D+
Sbjct: 315 ---PHSDSRANPTFHNGNWEWWNNTDT 338