DK960523 |
Clone id |
TST39A01NGRL0007_K10 |
Library |
TST39 |
Length |
618 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_K10. 5' end sequence. |
Accession |
DK960523 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL4261Contig1 |
Sequence |
CAGTGATCTACAGAAGCTTCGTCTGGATTTAGTCAATGAAGCTGGTGGTAATCTTATGCC ATACCATATCATGGGGAACTCTGAGCTTCAGCAAATAAGTAAGAAGCTTCCAAAGTCCAC TGAAGAGCTGCTGGAGGTGAATGGTATTGGAAAGGTGAAAAGCAACAAGTATGGTGCTCG TATTCTTGATGTGGTTGCAAAGGCTGTTGAGCGACATCAGAGCTTGCCAAAAGGCTTCAA AGAGAATGTTGTGCCATTTTCAAAACACCCAGCAGAAGAGGATATCCCTAAAACTGAAAG AGGAATCAAGGCTGGATCAAGCAAGAAGGGGGCTTCTGGACAGGATCTTAAAGATGGCAG GAAAACGGAAACAAAGAAAAAATCAAAGCATGAAACCGCGTCTACCGTAACATGGGCTTC TCAAGGTCCACCAAAATCCACTGTGGAAATGAGGGATCACGAGGGGTTTTCTCATATACC AGAAGGATTTCATCCCACAAATGATCTTGATTGCGTCCCAATACAAGCTACTGGACAGAG GACTGCCAGAACTTTTCCTCCGACACTCACTGCTGGTAAAAGGGTCAATGAGGGTGATTC TGATGCTTTGAGCTTTGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P40724 |
Definition |
sp|P40724|RECQ_SALTY ATP-dependent DNA helicase recQ OS=Salmonella typhimurium |
Align length |
68 |
Score (bit) |
42.7 |
E-value |
0.001 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QCL7 |
Definition |
tr|A7QCL7|A7QCL7_VITVI Chromosome chr12 scaffold_78, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
133 |
Score (bit) |
84.7 |
E-value |
4.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960523|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0007_K10, 5' (618 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QCL7|A7QCL7_VITVI Chromosome chr12 scaffold_78, whole genom... 85 4e-15 tr|Q9FT70|Q9FT70_ARATH DNA Helicase OS=Arabidopsis thaliana GN=r... 79 2e-13 tr|Q9C959|Q9C959_ARATH Putative DNA helicase; 33057-26178 OS=Ara... 79 2e-13 tr|Q9FT71|Q9FT71_ARATH DNA Helicase OS=Arabidopsis thaliana GN=r... 76 2e-12 tr|Q8L840|Q8L840_ARATH DNA helicase isolog (At1g10930) OS=Arabid... 76 2e-12 tr|Q7XQB6|Q7XQB6_ORYSJ OSJNBa0088K19.8 protein OS=Oryza sativa s... 63 1e-08 tr|Q0JD35|Q0JD35_ORYSJ Os04g0433800 protein OS=Oryza sativa subs... 63 1e-08 tr|A3AU17|A3AU17_ORYSJ Putative uncharacterized protein OS=Oryza... 63 1e-08 tr|B8AU06|B8AU06_ORYSI Putative uncharacterized protein OS=Oryza... 63 2e-08 tr|B8AU00|B8AU00_ORYSI Putative uncharacterized protein OS=Oryza... 59 2e-07 tr|Q831P2|Q831P2_ENTFA ATP-dependent DNA helicase RecQ OS=Entero... 57 1e-06 tr|B6SHH5|B6SHH5_MAIZE Putative uncharacterized protein OS=Zea m... 56 1e-06 tr|A6LUG5|A6LUG5_CLOB8 ATP-dependent DNA helicase RecQ OS=Clostr... 55 3e-06 tr|A5MZU5|A5MZU5_CLOK5 RecQ OS=Clostridium kluyveri (strain ATCC... 55 3e-06 tr|A9KN33|A9KN33_CLOPH ATP-dependent DNA helicase RecQ OS=Clostr... 54 7e-06 tr|A6QCJ7|A6QCJ7_SULNB ATP-dependent DNA helicase RecQ OS=Sulfur... 50 8e-05 tr|Q8XML4|Q8XML4_CLOPE Putative uncharacterized protein CPE0674 ... 50 1e-04 tr|Q0TTC2|Q0TTC2_CLOP1 HRDC domain protein OS=Clostridium perfri... 50 1e-04 tr|Q3XYV3|Q3XYV3_ENTFC ATP-dependent DNA helicase RecQ:ATP-requi... 50 1e-04 tr|B1RGU0|B1RGU0_CLOPE HRDC domain protein OS=Clostridium perfri... 50 1e-04 tr|B1R6L5|B1R6L5_CLOPE HRDC domain protein OS=Clostridium perfri... 50 1e-04 tr|B1BPE9|B1BPE9_CLOPE HRDC domain protein OS=Clostridium perfri... 50 1e-04 tr|B1BL64|B1BL64_CLOPE HRDC domain protein OS=Clostridium perfri... 50 1e-04 tr|B1BB21|B1BB21_CLOBO ATP-dependent DNA helicase RecQ OS=Clostr... 50 1e-04 tr|A2RMM8|A2RMM8_LACLM ATP-dependent DNA helicase RecQ OS=Lactoc... 49 2e-04 tr|B6NHG3|B6NHG3_BRAFL Putative uncharacterized protein (Fragmen... 49 2e-04 tr|Q186Q8|Q186Q8_CLOD6 ATP-dependent DNA helicase OS=Clostridium... 49 2e-04 tr|Q9CEM9|Q9CEM9_LACLA ATP-dependent DNA helicase RecQ OS=Lactoc... 49 3e-04 tr|Q7CKX9|Q7CKX9_YERPE ATP-dependent DNA helicase OS=Yersinia pe... 48 4e-04 tr|Q66FY3|Q66FY3_YERPS ATP-dependent DNA helicase OS=Yersinia ps... 48 4e-04
>tr|A7QCL7|A7QCL7_VITVI Chromosome chr12 scaffold_78, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035461001 PE=4 SV=1 Length = 439
Score = 84.7 bits (208), Expect = 4e-15 Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 13/133 (9%) Frame = +2
Query: 2 SDLQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGKVKSNKYGAR 181 S L+ LR LV EAG +M YHI GN+ LQQISK++P++ EELLEVNGIGK K +KYG R Sbjct: 242 SALRILRTVLVKEAGEGVMAYHIFGNATLQQISKRIPRTKEELLEVNGIGKAKISKYGDR 301
Query: 182 ILDVVAKAVERHQSLPKGF-------------KENVVPFSKHPAEEDIPKTERGIKAGSS 322 +L+ + ++ + K +E+ +P ++D K+ + + Sbjct: 302 VLETIESTIKEYYKTDKNSSSSNDSTDTIKRRRESAKVLDANPEDDDFTKSTDRSRGRAM 361
Query: 323 KKGASGQDLKDGR 361 K+ G + + R Sbjct: 362 KRHNKGGEANNTR 374
>tr|Q9FT70|Q9FT70_ARATH DNA Helicase OS=Arabidopsis thaliana GN=recQl4B PE=2 SV=1 Length = 1150
Score = 79.3 bits (194), Expect = 2e-13 Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 5/99 (5%) Frame = +2
Query: 8 LQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGKVKSNKYGARIL 187 L+ LR D+V E+ +M YHI GN+ L++ISK+LP++ EELL++NG+GK K +KYG R+L Sbjct: 1039 LKNLRTDIVKESPDLVMAYHIFGNATLKEISKRLPRTKEELLDINGLGKAKVSKYGDRLL 1098
Query: 188 DVVAKAVERHQSLPKGF-----KENVVPFSKHPAEEDIP 289 + + + H G ENV P + AE+D P Sbjct: 1099 ETIDSTINDHYKTRPGSGKRRRDENVNP---NVAEDDDP 1134
>tr|Q9C959|Q9C959_ARATH Putative DNA helicase; 33057-26178 OS=Arabidopsis thaliana GN=T7P1.7 PE=4 SV=1 Length = 1031
Score = 79.3 bits (194), Expect = 2e-13 Identities = 42/99 (42%), Positives = 62/99 (62%), Gaps = 5/99 (5%) Frame = +2
Query: 8 LQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGKVKSNKYGARIL 187 L+ LR D+V E+ +M YHI GN+ L++ISK+LP++ EELL++NG+GK K +KYG R+L Sbjct: 920 LKNLRTDIVKESPDLVMAYHIFGNATLKEISKRLPRTKEELLDINGLGKAKVSKYGDRLL 979
Query: 188 DVVAKAVERHQSLPKGF-----KENVVPFSKHPAEEDIP 289 + + + H G ENV P + AE+D P Sbjct: 980 ETIDSTINDHYKTRPGSGKRRRDENVNP---NVAEDDDP 1015
>tr|Q9FT71|Q9FT71_ARATH DNA Helicase OS=Arabidopsis thaliana GN=recQl4A PE=2 SV=1 Length = 1182
Score = 75.9 bits (185), Expect = 2e-12 Identities = 37/82 (45%), Positives = 56/82 (68%) Frame = +2
Query: 8 LQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGKVKSNKYGARIL 187 L+KLR LV EA +M YHI NS LQQIS+++P++ EELLE+NG+GK K +KYG ++L Sbjct: 1022 LRKLRTALVKEAPDGVMAYHIFINSTLQQISRRIPRTKEELLEINGLGKAKVSKYGDQLL 1081
Query: 188 DVVAKAVERHQSLPKGFKENVV 253 + + V + K K++++ Sbjct: 1082 ETIETTVNEYYGTNK--KDSII 1101
>tr|Q8L840|Q8L840_ARATH DNA helicase isolog (At1g10930) OS=Arabidopsis thaliana GN=At1g10930 PE=2 SV=1 Length = 1188
Score = 75.9 bits (185), Expect = 2e-12 Identities = 37/82 (45%), Positives = 56/82 (68%) Frame = +2
Query: 8 LQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGKVKSNKYGARIL 187 L+KLR LV EA +M YHI NS LQQIS+++P++ EELLE+NG+GK K +KYG ++L Sbjct: 1028 LRKLRTALVKEAPDGVMAYHIFINSTLQQISRRIPRTKEELLEINGLGKAKVSKYGDQLL 1087
Query: 188 DVVAKAVERHQSLPKGFKENVV 253 + + V + K K++++ Sbjct: 1088 ETIETTVNEYYGTNK--KDSII 1107
>tr|Q7XQB6|Q7XQB6_ORYSJ OSJNBa0088K19.8 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0088K19.8 PE=4 SV=2 Length = 1164
Score = 63.2 bits (152), Expect = 1e-08 Identities = 31/70 (44%), Positives = 47/70 (67%) Frame = +2
Query: 8 LQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGKVKSNKYGARIL 187 LQ LR +++E L+ YHI N L++IS ++P++ EEL+E+NGIGK K NKYG R+L Sbjct: 990 LQCLRTQIMDE-NPQLLAYHIFKNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRVL 1048
Query: 188 DVVAKAVERH 217 + + R+ Sbjct: 1049 ATIEDFLARY 1058
>tr|Q0JD35|Q0JD35_ORYSJ Os04g0433800 protein OS=Oryza sativa subsp. japonica GN=Os04g0433800 PE=4 SV=1 Length = 1080
Score = 63.2 bits (152), Expect = 1e-08 Identities = 31/70 (44%), Positives = 47/70 (67%) Frame = +2
Query: 8 LQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGKVKSNKYGARIL 187 LQ LR +++E L+ YHI N L++IS ++P++ EEL+E+NGIGK K NKYG R+L Sbjct: 906 LQCLRTQIMDE-NPQLLAYHIFKNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRVL 964
Query: 188 DVVAKAVERH 217 + + R+ Sbjct: 965 ATIEDFLARY 974
>tr|A3AU17|A3AU17_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_014289 PE=4 SV=1 Length = 2413
Score = 63.2 bits (152), Expect = 1e-08 Identities = 31/70 (44%), Positives = 47/70 (67%) Frame = +2
Query: 8 LQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGKVKSNKYGARIL 187 LQ LR +++E L+ YHI N L++IS ++P++ EEL+E+NGIGK K NKYG R+L Sbjct: 2239 LQCLRTQIMDE-NPQLLAYHIFKNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRVL 2297
Query: 188 DVVAKAVERH 217 + + R+ Sbjct: 2298 ATIEDFLARY 2307
>tr|B8AU06|B8AU06_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_15961 PE=4 SV=1 Length = 2505
Score = 62.8 bits (151), Expect = 2e-08 Identities = 31/70 (44%), Positives = 47/70 (67%) Frame = +2
Query: 8 LQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGKVKSNKYGARIL 187 LQ LR +++E L+ YHI N L++IS ++P++ EEL+E+NGIGK K NKYG R+L Sbjct: 2331 LQCLRTQIMDE-NPQLLAYHIFKNETLKEISNRVPRTKEELVEINGIGKNKLNKYGDRVL 2389
Query: 188 DVVAKAVERH 217 + + R+ Sbjct: 2390 ATIEDFLARY 2399
>tr|B8AU00|B8AU00_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_15951 PE=4 SV=1 Length = 346
Score = 59.3 bits (142), Expect = 2e-07 Identities = 29/60 (48%), Positives = 42/60 (70%) Frame = +2
Query: 8 LQKLRLDLVNEAGGNLMPYHIMGNSELQQISKKLPKSTEELLEVNGIGKVKSNKYGARIL 187 LQ LR +++E L+ YHI N L++IS ++P++ EEL+E+NGIGK K NKYG R + Sbjct: 144 LQCLRTQIMDE-NPQLLAYHIFKNETLKEISNRMPRTKEELVEINGIGKNKLNKYGDRYI 202
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