DK960322
Clone id TST39A01NGRL0007_B17
Library
Length 659
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0007_B17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
ATTGCTGCAGATAGTCCTCGCCATGGGCTCTTCATCGCGCCTCTCATAGCTCGAAATGGT
GTAGCGCAGGCGAAAGCGCAAATTATTCTCTTAGGCGCTCCCCCTTACCCTAACTATCTT
CAGTGGAGCAAAGTTGGCGGGACGCTTTGCATAGCGTGGTCCAGGAAGCAGTAGTCGAAG
CCTATCAGAAAGTAATAGAGTAGTGGGGGAAGCAGTAATTGAAGCTCTGAAGGAAGTGAA
ATGGATGGTTTTGGACGATCAGAGGCTTTGATGGGGACTCCTGAAGATGGTAAAGGAGGT
CTGCAGTCCAATAAGTCAGGGATCGTCTTCAAAGCAACTGCCCCCCGCAAATCCATGCTA
GGGCTTGATGTTTTAGCAGAAAACAAGCGCCAAGATCGGAAGCGTCAGTTTACATCCTCT
ATGGCTGCTGATGATGCATCAGATGATATTCCACATGAACAAGATGAGACAAGCGATCCT
TTCAAGAAGGACCATGGACATACACGCAAATATAGAGTTACACAAACAGAGGATTCACCT
GTACAATCTGGTGGAGCTAGGAAGAAAGATTCAAATGTAGTCAGTGAGCGAGAGAGAGAG
CATCGACCCTCGGATTCTGCCTCAAACAGGAGGACCTCAAGAGACAATCATACACCATC
■■Homology search results ■■ -
sp_hit_id Q17R09
Definition sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus
Align length 117
Score (bit) 42.7
E-value 0.002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960322|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_B17, 5'
(659 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA... 43 0.002
sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA... 42 0.003
sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA... 34 0.78
sp|A2AM05|CNTLN_MOUSE Centlein OS=Mus musculus GN=Cntln PE=2 SV=1 31 5.1

>sp|Q17R09|PRP16_BOVIN Pre-mRNA-splicing factor ATP-dependent RNA
helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1
Length = 1227

Score = 42.7 bits (99), Expect = 0.002
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 10/117 (8%)
Frame = +1

Query: 325 VFKATAPRKSMLGLDVLAENKRQDR----------KRQFTXXXXXXXXXXXIPHEQDETS 474
VFKA APR S+LGLD+LA KR++R K + + + E S
Sbjct: 38 VFKAPAPRPSLLGLDLLASLKRKEREEKDDGEDKKKSRISSYKDWEESKDDQRDAEAEDS 97

Query: 475 DPFKKDHGHTRKYRVTQTEDSPVQSGGARKKDSNVVSEREREHRPSDSASNRRTSRD 645
D + R YR + E +P GG ++ +RERE R ++ + +D
Sbjct: 98 DQAGRSGRKDRHYRSARVE-TPSHPGGVSEEFWERSRQRERERREHGVYASSKDEKD 153


>sp|Q92620|PRP16_HUMAN Pre-mRNA-splicing factor ATP-dependent RNA
helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2
Length = 1227

Score = 42.0 bits (97), Expect = 0.003
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Frame = +1

Query: 325 VFKATAPRKSMLGLDVLAENKRQDR----------KRQFTXXXXXXXXXXXIPHEQDETS 474
VFKA APR S+LGLD+LA KR++R K + + ++E
Sbjct: 38 VFKAPAPRPSLLGLDLLASLKRREREEKDDGEDKKKSKVSSYKDWEESKDDQKDAEEEGG 97

Query: 475 DPFKKDHGHTRKYRVTQTEDSPVQSGGARKKDSNVVSEREREHRPSDSASNRRTSRD 645
D ++ R YR + E +P GG ++ +RERE R ++ + +D
Sbjct: 98 DQAGQNIRKDRHYRSARVE-TPSHPGGVSEEFWERSRQRERERREHGVYASSKEEKD 153


>sp|Q9P774|PRP16_SCHPO Pre-mRNA-splicing factor ATP-dependent RNA
helicase prp16 OS=Schizosaccharomyces pombe GN=prp16
PE=2 SV=2
Length = 1173

Score = 33.9 bits (76), Expect = 0.78
Identities = 17/37 (45%), Positives = 26/37 (70%)
Frame = +1

Query: 295 GGLQSNKSGIVFKATAPRKSMLGLDVLAENKRQDRKR 405
G + SN+SG+ K P+KS LGLDVLA K++++ +
Sbjct: 97 GLVLSNRSGL--KGREPKKSQLGLDVLAVQKKKEKSQ 131


>sp|A2AM05|CNTLN_MOUSE Centlein OS=Mus musculus GN=Cntln PE=2 SV=1
Length = 1397

Score = 31.2 bits (69), Expect = 5.1
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1

Query: 517 VTQTEDSPVQSGGARKKDSNVVSEREREHRPSDSASNRRTSRD 645
VT ++ R KD VV ER HRP+D A + + D
Sbjct: 764 VTTLRRQVTEAKALRGKDEEVVCPEERAHRPTDKAKSEMATTD 806


tr_hit_id Q5ZLE8
Definition tr|Q5ZLE8|Q5ZLE8_CHICK Putative uncharacterized protein OS=Gallus gallus
Align length 130
Score (bit) 48.5
E-value 0.0004
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK960322|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0007_B17, 5'
(659 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5ZLE8|Q5ZLE8_CHICK Putative uncharacterized protein OS=Gallu... 49 4e-04
tr|Q6P404|Q6P404_DANRE DEAH (Asp-Glu-Ala-His) box polypeptide 38... 47 0.001
tr|B4DET0|B4DET0_HUMAN cDNA FLJ55900, highly similar to Pre-mRNA... 45 0.004
tr|Q80X98|Q80X98_MOUSE DEAH (Asp-Glu-Ala-His) box polypeptide 38... 43 0.015
tr|Q6A0A1|Q6A0A1_MOUSE MKIAA0224 protein (Fragment) OS=Mus muscu... 43 0.015
tr|Q5R5R8|Q5R5R8_PONAB Putative uncharacterized protein DKFZp459... 43 0.020
tr|Q54MH4|Q54MH4_DICDI DEAD/DEAH box helicase OS=Dictyostelium d... 42 0.033
tr|A8K6G9|A8K6G9_HUMAN cDNA FLJ76871, highly similar to Homo sap... 42 0.033
tr|B6L212|B6L212_BRAFL Putative uncharacterized protein OS=Branc... 39 0.22
tr|Q9FPR8|Q9FPR8_CHLRE DEAH-box RNA helicase OS=Chlamydomonas re... 39 0.37
tr|A7SKZ8|A7SKZ8_NEMVE Predicted protein OS=Nematostella vectens... 37 0.82
tr|B4DVG8|B4DVG8_HUMAN cDNA FLJ51112, highly similar to Pre-mRNA... 37 0.82
tr|A9JSD1|A9JSD1_XENTR LOC100135135 protein (Fragment) OS=Xenopu... 37 1.1
tr|A8JGB2|A8JGB2_CHLRE DEAH-box RNA helicase (Fragment) OS=Chlam... 37 1.1
tr|Q5DI12|Q5DI12_SCHJA SJCHGC07348 protein OS=Schistosoma japoni... 36 2.4
tr|B6QKK3|B6QKK3_PENMA RING finger domain protein, putative OS=P... 35 3.1
tr|A8Q5B5|A8Q5B5_BRUMA Putative uncharacterized protein OS=Brugi... 35 4.1
tr|A4R8Y6|A4R8Y6_MAGGR Putative uncharacterized protein OS=Magna... 34 7.0
tr|B8PFD6|B8PFD6_9APHY Predicted protein OS=Postia placenta Mad-... 34 9.1

>tr|Q5ZLE8|Q5ZLE8_CHICK Putative uncharacterized protein OS=Gallus
gallus GN=RCJMB04_6i5 PE=2 SV=1
Length = 1230

Score = 48.5 bits (114), Expect = 4e-04
Identities = 43/130 (33%), Positives = 58/130 (44%), Gaps = 17/130 (13%)
Frame = +1

Query: 268 LMGT-PEDGKGGLQSN-KSGI----VFKATAPRKSMLGLDVLAENKRQDRKRQ------- 408
L GT PE GGL +S + VFKA APR S+LGLDVLA KR++R+ +
Sbjct: 12 LAGTGPEAEAGGLVPRARSAVPEQHVFKAPAPRASLLGLDVLAAQKRREREEEGTSGKRS 71

Query: 409 ----FTXXXXXXXXXXXIPHEQDETSDPFKKDHGHTRKYRVTQTEDSPVQSGGARKKDSN 576
+ E+DE D + R YR E +P +GG ++
Sbjct: 72 RVSSYRDWEEGRDEAGSPDEEEDEEEDRSGRSTRKDRHYRSVHVE-TPSYTGGVSEEFWE 130

Query: 577 VVSEREREHR 606
+RERE R
Sbjct: 131 RSRQRERERR 140


>tr|Q6P404|Q6P404_DANRE DEAH (Asp-Glu-Ala-His) box polypeptide 38
OS=Danio rerio GN=dhx38 PE=2 SV=1
Length = 1258

Score = 47.0 bits (110), Expect = 0.001
Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 19/126 (15%)
Frame = +1

Query: 325 VFKATAPRKSMLGLDVLAENKRQDR--KRQFTXXXXXXXXXXXIPHEQ---DETSDPFKK 489
VF+A APR S+LGLD+LA KR++R K + E+ D SD +
Sbjct: 35 VFRAPAPRTSLLGLDLLAAQKRKEREGKERLDDQPKKSKVSSYKDWEEGKSDSGSDDENQ 94

Query: 490 DHGHT------RKYRVTQTEDSPVQSGGARKKDSNVVSEREREHR--------PSDSASN 627
+ G + RKYRVT +E +P GG ++ +RE++ R D + +
Sbjct: 95 EDGESRNGKKERKYRVTGSE-TPSNPGGVSEEFKRKHQQREKDRREHGVYASSKEDKSKD 153

Query: 628 RRTSRD 645
+ SRD
Sbjct: 154 KNRSRD 159


>tr|B4DET0|B4DET0_HUMAN cDNA FLJ55900, highly similar to
Pre-mRNA-splicing factor ATP-dependent RNA helicase
PRP16 (EC 3.6.1.-) OS=Homo sapiens PE=2 SV=1
Length = 1220

Score = 45.1 bits (105), Expect = 0.004
Identities = 33/110 (30%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Frame = +1

Query: 325 VFKATAPRKSMLGLDVLAENKRQDRKRQFTXXXXXXXXXXXIPHEQD---ETSDPFKKDH 495
VFKA APR S+LGLD+LA KR++R+ + + ++D E D ++
Sbjct: 38 VFKAPAPRPSLLGLDLLASLKRREREEKKSKVSSYKDWEESKDDQKDAEEEGGDQAGQNI 97

Query: 496 GHTRKYRVTQTEDSPVQSGGARKKDSNVVSEREREHRPSDSASNRRTSRD 645
R YR + E +P GG ++ +RERE R ++ + +D
Sbjct: 98 RKDRHYRSARVE-TPSHPGGVSEEFWERSRQRERERREHGVYASSKEEKD 146


>tr|Q80X98|Q80X98_MOUSE DEAH (Asp-Glu-Ala-His) box polypeptide 38
OS=Mus musculus GN=Dhx38 PE=2 SV=1
Length = 1228

Score = 43.1 bits (100), Expect = 0.015
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Frame = +1

Query: 325 VFKATAPRKSMLGLDVLAENKRQDR----------KRQFTXXXXXXXXXXXIPHEQDETS 474
VFKA APR S+LGLD+LA KR++R K + + ++E+
Sbjct: 38 VFKAPAPRPSLLGLDLLASLKRREREEKDDGEDKKKSRVSSYKDWEESKDDQKDAEEESE 97

Query: 475 DPFKKDHGHTRKYRVTQTEDSPVQSGGARKKDSNVVSEREREHRPSDSASNRRTSRD 645
D + R YR + E +P GG ++ +RER+ R ++ + +D
Sbjct: 98 DQAGRSSRRDRHYRSARVE-TPSHPGGVSEEFWERSRQRERDRREHGVYASSKEEKD 153


>tr|Q6A0A1|Q6A0A1_MOUSE MKIAA0224 protein (Fragment) OS=Mus musculus
GN=Dhx38 PE=2 SV=1
Length = 1224

Score = 43.1 bits (100), Expect = 0.015
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Frame = +1

Query: 325 VFKATAPRKSMLGLDVLAENKRQDR----------KRQFTXXXXXXXXXXXIPHEQDETS 474
VFKA APR S+LGLD+LA KR++R K + + ++E+
Sbjct: 41 VFKAPAPRPSLLGLDLLASLKRREREEKDDGEDKKKSRVSSYKDWEESKDDQKDAEEESE 100

Query: 475 DPFKKDHGHTRKYRVTQTEDSPVQSGGARKKDSNVVSEREREHRPSDSASNRRTSRD 645
D + R YR + E +P GG ++ +RER+ R ++ + +D
Sbjct: 101 DQAGRSSRRDRHYRSARVE-TPSHPGGVSEEFWERSRQRERDRREHGVYASSKEEKD 156


>tr|Q5R5R8|Q5R5R8_PONAB Putative uncharacterized protein
DKFZp459M216 OS=Pongo abelii GN=DKFZp459M216 PE=2 SV=1
Length = 1227

Score = 42.7 bits (99), Expect = 0.020
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Frame = +1

Query: 325 VFKATAPRKSMLGLDVLAENKRQDR----------KRQFTXXXXXXXXXXXIPHEQDETS 474
VFKA APR S+LGLD+LA KR++R K + + ++E
Sbjct: 38 VFKAPAPRPSLLGLDLLASLKRREREEKDDGEDKKKSKISSYKDWEESKDDQKDAEEEGG 97

Query: 475 DPFKKDHGHTRKYRVTQTEDSPVQSGGARKKDSNVVSEREREHRPSDSASNRRTSRD 645
D ++ R YR + E +P GG ++ +RERE R ++ + +D
Sbjct: 98 DQAGRNIRKDRHYRSARVE-TPSHPGGVSEEFWERSRQRERERREHGVYASSKEEKD 153


>tr|Q54MH4|Q54MH4_DICDI DEAD/DEAH box helicase OS=Dictyostelium
discoideum GN=helD PE=4 SV=1
Length = 1387

Score = 42.0 bits (97), Expect = 0.033
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 9/132 (6%)
Frame = +1

Query: 283 EDGKGGLQSNKSGI----VFKATAPRKSMLGLDVLAENKR---QDRKRQFTXXXXXXXXX 441
E KGGL + K+ FK +KS+LGLD+LA+ KR ++++R+
Sbjct: 107 ETMKGGLITRKNSTNNDEQFKIPQVKKSVLGLDILAKEKREEQEEKRRKELLDRFNNDDD 166

Query: 442 XXIPHEQDETSDPFKKDHGHTRKYRVTQTEDSPVQSGGARKKDSNVVSER--EREHRPSD 615
+ D FKK H R Q + +P++S + S+ S R+ R S+
Sbjct: 167 SNNDNYNDNDESSFKKPEKHYR-----QIKSTPIRSNDYERNSSSSSSSSYDRRDDRSSN 221

Query: 616 SASNRRTSRDNH 651
RR R ++
Sbjct: 222 RDDYRRDDRSSN 233


>tr|A8K6G9|A8K6G9_HUMAN cDNA FLJ76871, highly similar to Homo
sapiens DEAH (Asp-Glu-Ala-His) box polypeptide 38
(DHX38), mRNA OS=Homo sapiens PE=2 SV=1
Length = 1227

Score = 42.0 bits (97), Expect = 0.033
Identities = 33/117 (28%), Positives = 52/117 (44%), Gaps = 10/117 (8%)
Frame = +1

Query: 325 VFKATAPRKSMLGLDVLAENKRQDR----------KRQFTXXXXXXXXXXXIPHEQDETS 474
VFKA APR S+LGLD+LA KR++R K + + ++E
Sbjct: 38 VFKAPAPRPSLLGLDLLASLKRREREEKDDGEDKKKSKVSSYKDWEESKDDQKDAEEEGG 97

Query: 475 DPFKKDHGHTRKYRVTQTEDSPVQSGGARKKDSNVVSEREREHRPSDSASNRRTSRD 645
D ++ R YR + E +P GG ++ +RERE R ++ + +D
Sbjct: 98 DQAGQNIRKDRHYRSARVE-TPSHPGGVSEEFWERSRQRERERREHGVYASSKEEKD 153


>tr|B6L212|B6L212_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_117669 PE=4 SV=1
Length = 1218

Score = 39.3 bits (90), Expect = 0.22
Identities = 35/135 (25%), Positives = 53/135 (39%), Gaps = 17/135 (12%)
Frame = +1

Query: 292 KGGLQSNKSGIVFKATAPRKSMLGLDVLAENKRQDR---------KRQFTXXXXXXXXXX 444
K G + FKA APR S+LGLD LA KR+++ KR
Sbjct: 26 KKGPSTTDDKHTFKAPAPRTSLLGLDKLAAQKRKEKEESEEGKTPKRSKASSYNDDWDEE 85

Query: 445 XIPHEQDETSDPFKKDHGHTRKYRVTQTEDSPVQSGGARKKDSNVVSERERE-------- 600
I E+++ + H R RV ++P GG ++ + +R++E
Sbjct: 86 DIEEEKEDRQSFGSRKDRHYRPARV----ETPSHPGGVSEEVREKLQKRQKEREDRKHGV 141

Query: 601 HRPSDSASNRRTSRD 645
+ S RR RD
Sbjct: 142 YTSSKEEKERRRDRD 156


>tr|Q9FPR8|Q9FPR8_CHLRE DEAH-box RNA helicase OS=Chlamydomonas
reinhardtii GN=Mut6 PE=2 SV=1
Length = 1432

Score = 38.5 bits (88), Expect = 0.37
Identities = 23/41 (56%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +1

Query: 280 PEDGK--GGLQSNKSGIVFKATAPRKSMLGLDVLAENKRQD 396
P D K GGL VFKA APR SMLGLD LA KR +
Sbjct: 8 PADSKEAGGLLVRPERPVFKAPAPRTSMLGLDKLAAQKRAE 48