DK960118 |
Clone id |
TST39A01NGRL0006_I19 |
Library |
TST39 |
Length |
461 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_I19. 5' end sequence. |
Accession |
DK960118 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
TTGGAGCCTCATCGGCTCAAGAGATCGAAGATGGAGCTCAACCTTGATGAATCCTGACTG TGTTTGTTTTGGAGATTATTTATGTGGTCTGGTTTATACATTTTCCTTCTGGTTTCTGTC CAATATTAACAAATGGCTTGCTTCCCTGTTTCTTATTTTTTTGGTTCCATGATCATGGTT TAAACCTACTGCCGTGTGAGATTTATTAATGTTCTTGCGTGCTGTGGTGATTTCCGCAAA TGTTCTATGGCTATGCATACACACAAATAAGTGCCACACAGCTATCCACATTTTTTTGAG GATGTTCATGGATAGTTTTTGAAACATGGAGAGCTGTTCAATTTCATGGTTTGCCGTAAT GATTCATCTCATCTTCTAGGAAATGTATATGCACATGTTGAGTCTGTGGAATCTGCAAAT GCTGCTTACCATGCAATCAATGGTCGTTTTTTTGCTGGGAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6YVX9 |
Definition |
sp|Q6YVX9|C3H16_ORYSJ Zinc finger CCCH domain-containing protein 16 OS=Oryza sativa subsp. japonica |
Align length |
67 |
Score (bit) |
82.8 |
E-value |
7.0e-16 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8ADX5 |
Definition |
tr|B8ADX5|B8ADX5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica |
Align length |
67 |
Score (bit) |
82.8 |
E-value |
8.0e-15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960118|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_I19, 5' (461 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8ADX5|B8ADX5_ORYSI Putative uncharacterized protein OS=Oryza... 83 8e-15 tr|A3A811|A3A811_ORYSJ Putative uncharacterized protein OS=Oryza... 83 8e-15 tr|A7QCC6|A7QCC6_VITVI Chromosome undetermined scaffold_77, whol... 79 1e-13 tr|A9TV84|A9TV84_PHYPA Predicted protein (Fragment) OS=Physcomit... 77 4e-13 tr|A4PSD8|A4PSD8_MEDTR Concanavalin A-like lectin/glucanase; U2 ... 76 7e-13 tr|Q9SY74|Q9SY74_ARATH F14N23.20 OS=Arabidopsis thaliana PE=4 SV=1 66 1e-09 tr|B6TRJ7|B6TRJ7_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 57 5e-07 tr|B6TCE1|B6TCE1_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 57 5e-07 tr|B6T3Q5|B6T3Q5_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 57 5e-07 tr|B6SY08|B6SY08_MAIZE Splicing factor U2af 38 kDa subunit OS=Ze... 57 5e-07 tr|B4FAF4|B4FAF4_MAIZE Putative uncharacterized protein OS=Zea m... 57 5e-07 tr|B0EV80|B0EV80_ENTDI Splicing factor U2AF 23 kDa subunit, puta... 57 5e-07 tr|A9TES1|A9TES1_PHYPA Predicted protein OS=Physcomitrella paten... 55 1e-06 tr|A9RKV0|A9RKV0_PHYPA Predicted protein (Fragment) OS=Physcomit... 55 1e-06 tr|Q7Q0R8|Q7Q0R8_ANOGA AGAP010194-PA (Fragment) OS=Anopheles gam... 55 2e-06 tr|Q2QKB5|Q2QKB5_WHEAT U2AF small subunit OS=Triticum aestivum P... 54 3e-06 tr|Q5AQR8|Q5AQR8_EMENI Putative uncharacterized protein OS=Emeri... 54 3e-06 tr|Q4WFF4|Q4WFF4_ASPFU U2 auxiliary factor small subunit, putati... 54 3e-06 tr|Q0CFR7|Q0CFR7_ASPTN Splicing factor U2AF 23 kDa subunit OS=As... 54 3e-06 tr|B8M673|B8M673_9EURO U2 auxiliary factor small subunit, putati... 54 3e-06 tr|B6Q7F2|B6Q7F2_PENMA U2 auxiliary factor small subunit, putati... 54 3e-06 tr|B0Y0F0|B0Y0F0_ASPFC U2 auxiliary factor small subunit, putati... 54 3e-06 tr|A2Q7K7|A2Q7K7_ASPNC Complex: Forms a heterodimer with the spU... 54 3e-06 tr|A1DJV9|A1DJV9_NEOFI U2 auxiliary factor small subunit, putati... 54 3e-06 tr|A1CCH3|A1CCH3_ASPCL U2 auxiliary factor small subunit, putati... 54 3e-06 tr|Q1DGX9|Q1DGX9_AEDAE U2 small nuclear ribonucleoprotein auxili... 54 5e-06 tr|Q16R52|Q16R52_AEDAE U2 snrnp auxiliary factor, small subunit ... 54 5e-06 tr|B8AWR4|B8AWR4_ORYSI Putative uncharacterized protein OS=Oryza... 53 9e-06 tr|B7EHH7|B7EHH7_ORYSJ cDNA clone:001-039-A01, full insert seque... 53 9e-06 tr|Q5QLR4|Q5QLR4_ORYSJ U2 auxiliary factor small chain-like (Put... 52 1e-05
>tr|B8ADX5|B8ADX5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_07661 PE=4 SV=1 Length = 731
Score = 82.8 bits (203), Expect = 8e-15 Identities = 39/67 (58%), Positives = 48/67 (71%) Frame = +1
Query: 259 THK*VPHSYPHFFEDVHG*FLKHGELFNFMVCRNDSSHLLGNVYAHVESVESANAAYHAI 438 T + + SY F+EDVH FLK GEL NF VCRN S HL GNVY H +S++SA AY ++ Sbjct: 272 TDEEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSM 331
Query: 439 NGRFFAG 459 NGR+FAG Sbjct: 332 NGRYFAG 338
>tr|A3A811|A3A811_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_006933 PE=4 SV=1 Length = 582
Score = 82.8 bits (203), Expect = 8e-15 Identities = 39/67 (58%), Positives = 48/67 (71%) Frame = +1
Query: 259 THK*VPHSYPHFFEDVHG*FLKHGELFNFMVCRNDSSHLLGNVYAHVESVESANAAYHAI 438 T + + SY F+EDVH FLK GEL NF VCRN S HL GNVY H +S++SA AY ++ Sbjct: 123 TDEEIEQSYEEFYEDVHTEFLKFGELVNFKVCRNGSLHLRGNVYVHYKSLDSALIAYSSM 182
Query: 439 NGRFFAG 459 NGR+FAG Sbjct: 183 NGRYFAG 189
>tr|A7QCC6|A7QCC6_VITVI Chromosome undetermined scaffold_77, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035343001 PE=4 SV=1 Length = 333
Score = 79.0 bits (193), Expect = 1e-13 Identities = 37/68 (54%), Positives = 47/68 (69%) Frame = +1
Query: 256 HTHK*VPHSYPHFFEDVHG*FLKHGELFNFMVCRNDSSHLLGNVYAHVESVESANAAYHA 435 +T + V Y F+EDV FLK GE+ NF VCRN S HL GNVY H +S++SA AYH+ Sbjct: 164 YTDEEVERCYEEFYEDVQTEFLKFGEIVNFKVCRNGSFHLRGNVYVHYKSLDSAVLAYHS 223
Query: 436 INGRFFAG 459 ING ++AG Sbjct: 224 INGLYYAG 231
>tr|A9TV84|A9TV84_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_151209 PE=4 SV=1 Length = 158
Score = 77.0 bits (188), Expect = 4e-13 Identities = 36/67 (53%), Positives = 45/67 (67%) Frame = +1
Query: 256 HTHK*VPHSYPHFFEDVHG*FLKHGELFNFMVCRNDSSHLLGNVYAHVESVESANAAYHA 435 +T + V Y F++DVH F++ GEL NF VCRN S HL GNVY H S ESA AY+ Sbjct: 55 YTDEEVAQEYEEFYDDVHSEFIQFGELVNFKVCRNGSPHLRGNVYVHYASQESAMLAYNH 114
Query: 436 INGRFFA 456 +NGRF+A Sbjct: 115 MNGRFYA 121
>tr|A4PSD8|A4PSD8_MEDTR Concanavalin A-like lectin/glucanase; U2 auxiliary factor small subunit OS=Medicago truncatula GN=MtrDRAFT_AC140549g65v2 PE=4 SV=1 Length = 584
Score = 76.3 bits (186), Expect = 7e-13 Identities = 35/71 (49%), Positives = 48/71 (67%) Frame = +1
Query: 247 MAMHTHK*VPHSYPHFFEDVHG*FLKHGELFNFMVCRNDSSHLLGNVYAHVESVESANAA 426 M +T + V + F+EDVH FLK GE+ NF VC+N S HL GNVY + ++SA A Sbjct: 1 MMQYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLA 60
Query: 427 YHAINGRFFAG 459 Y+++NGR+FAG Sbjct: 61 YNSVNGRYFAG 71
>tr|Q9SY74|Q9SY74_ARATH F14N23.20 OS=Arabidopsis thaliana PE=4 SV=1 Length = 836
Score = 65.9 bits (159), Expect = 1e-09 Identities = 39/94 (41%), Positives = 44/94 (46%), Gaps = 35/94 (37%) Frame = +1
Query: 283 YPHFFEDVHG*FLKHGELFNFMVCR----------------------------------- 357 Y F+EDVH FLK+GEL NF VCR Sbjct: 348 YEEFYEDVHTEFLKYGELVNFKVCRFSSAPSPPFPSFPLPPLFFLLSIISHRFILYQIRI 407
Query: 358 NDSSHLLGNVYAHVESVESANAAYHAINGRFFAG 459 N S HL GNVY H S+ESA AY +INGR+FAG Sbjct: 408 NGSFHLKGNVYVHYRSLESAILAYQSINGRYFAG 441
>tr|B6TRJ7|B6TRJ7_MAIZE Splicing factor U2af 38 kDa subunit OS=Zea mays PE=2 SV=1 Length = 299
Score = 57.0 bits (136), Expect = 5e-07 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = +1
Query: 283 YPHFFEDVHG*FLKHGELFNFMVCRNDSSHLLGNVYAHVESVESANAAYHAINGRFFAG 459 + F+ED++ K GE+ N VC N + H++GNVY E A AAY+A+ GRF++G Sbjct: 78 FEDFYEDIYEELGKFGEIENLNVCDNLADHMIGNVYVQFREEEQAAAAYNALQGRFYSG 136
>tr|B6TCE1|B6TCE1_MAIZE Splicing factor U2af 38 kDa subunit OS=Zea mays PE=2 SV=1 Length = 307
Score = 57.0 bits (136), Expect = 5e-07 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = +1
Query: 283 YPHFFEDVHG*FLKHGELFNFMVCRNDSSHLLGNVYAHVESVESANAAYHAINGRFFAG 459 + F+ED++ K GE+ N VC N + H++GNVY E A AAY+A+ GRF++G Sbjct: 78 FEDFYEDIYEELGKFGEIENLNVCDNLADHMIGNVYVQFREEEQAAAAYNALQGRFYSG 136
>tr|B6T3Q5|B6T3Q5_MAIZE Splicing factor U2af 38 kDa subunit OS=Zea mays PE=2 SV=1 Length = 305
Score = 57.0 bits (136), Expect = 5e-07 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = +1
Query: 283 YPHFFEDVHG*FLKHGELFNFMVCRNDSSHLLGNVYAHVESVESANAAYHAINGRFFAG 459 + F+ED++ K GE+ N VC N + H++GNVY E A AAY+A+ GRF++G Sbjct: 78 FEDFYEDIYEELGKFGEIENLNVCDNLADHMIGNVYVQFREEEQAAAAYNALQGRFYSG 136
>tr|B6SY08|B6SY08_MAIZE Splicing factor U2af 38 kDa subunit OS=Zea mays PE=2 SV=1 Length = 307
Score = 57.0 bits (136), Expect = 5e-07 Identities = 25/59 (42%), Positives = 37/59 (62%) Frame = +1
Query: 283 YPHFFEDVHG*FLKHGELFNFMVCRNDSSHLLGNVYAHVESVESANAAYHAINGRFFAG 459 + F+ED++ K GE+ N VC N + H++GNVY E A AAY+A+ GRF++G Sbjct: 78 FEDFYEDIYEELGKFGEIENLNVCDNLADHMIGNVYVQFREEEQAAAAYNALQGRFYSG 136
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