NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960088
Clone id TST39A01NGRL0006_H09
Library
Length 453
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_H09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGCGAACCACAGTCGGCATCTTTGGTTAGTTCTGCAATGAAGGAAGCAACTCTTGCTGCT
GTATCATGTATGGAGGGTGTGCTCTGTGAACGTGGGCAAGGAGGTACCAATTCTACTGTA
GGAGATGAAAAGGAAAACATGTTAGTGGGAAATTCTATTGCCACTTCATTGATTGGACTG
TGCCTAACAGCTTCCGAGTCCCGCTTATTTTCTGTTGATGAAGATTGTGAACATGCTGAA
AGACAACCGCAAGGTTGTGTATCTCCAAAAGATGCTCAGGGTGTGGACTCCTCACGATGT
TATGGACAGTATGCTCTGGATAATGCACGGTCGGTGGCTATGTAAGCAGAACATGAGGTC
GAGAAGTATCGTACACCATAGGTGCTAGATGCTAAATCATCTACCCTTAATGATGATATC
CCCACTTGTGATAATGCTCACAGATTGTCCATC
■■Homology search results ■■ -
sp_hit_id Q66136
Definition sp|Q66136|ORF2A_CMVB RNA-directed RNA polymerase 2A OS=Cucumber mosaic virus (strain B)
Align length 69
Score (bit) 32.7
E-value 0.74
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960088|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_H09, 5'
         (453 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q66136|ORF2A_CMVB RNA-directed RNA polymerase 2A OS=Cucumber ...    33   0.74 
sp|Q68W04|END3_RICTY Endonuclease III OS=Rickettsia typhi GN=nth...    32   1.7  
sp|O14511|NRG2_HUMAN Pro-neuregulin-2, membrane-bound isoform OS...    31   2.2  
sp|Q09901|YAJ1_SCHPO Uncharacterized family 31 glucosidase C30D1...    31   2.8  
sp|P93528|PHYC_SORBI Phytochrome C OS=Sorghum bicolor GN=PHYC PE...    30   3.7  
sp|Q9WXU2|Y087_THEMA UPF0103 protein TM_0087 OS=Thermotoga marit...    30   4.8  
sp|Q66145|ORF2A_CMVMB RNA-directed RNA polymerase 2A OS=Cucumber...    30   4.8  
sp|P31629|ZEP2_HUMAN Transcription factor HIVEP2 OS=Homo sapiens...    30   4.9  
sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2...    30   6.3  
sp|P41411|CDC18_SCHPO Cell division control protein 18 OS=Schizo...    30   6.3  
sp|P79777|BRAC_CHICK Brachyury protein OS=Gallus gallus GN=T PE=...    30   6.3  
sp|Q7TQH0|ATX2L_MOUSE Ataxin-2-like protein OS=Mus musculus GN=A...    30   6.3  
sp|Q5SX79|SHRM1_MOUSE Protein Shroom1 OS=Mus musculus GN=Shroom1...    30   6.4  
sp|Q9CS84|NRX1A_MOUSE Neurexin-1-alpha OS=Mus musculus GN=Nrxn1 ...    29   8.2  
sp|Q9ULB1|NRX1A_HUMAN Neurexin-1-alpha OS=Homo sapiens GN=NRXN1 ...    29   8.2  
sp|Q9UPZ9|ICK_HUMAN Serine/threonine-protein kinase ICK OS=Homo ...    29   8.2  
sp|Q5T1H1|EYS_HUMAN Protein eyes shut homolog OS=Homo sapiens GN...    29   8.2  
sp|Q5UPW4|YL283_MIMIV Putative ankyrin repeat protein L283 OS=Ac...    29   8.4  

>sp|Q66136|ORF2A_CMVB RNA-directed RNA polymerase 2A OS=Cucumber
           mosaic virus (strain B) GN=RNA2 PE=2 SV=1
          Length = 857

 Score = 32.7 bits (73), Expect = 0.74
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -2

Query: 284 TP*ASFGDTQPCGCLSACSQSSSTENKRDSEAVRHSPINEVAIEFPTNMFSFSSPTVELV 105
           TP  S+G  +      + ++S+ T   R  ++ R S      +  PT + S  S T  ++
Sbjct: 790 TPTGSYGGGEEAETKVSQTESTGT---RSQKSQRESAFKSQTVPLPTVLSSGRSGTDRVI 846

Query: 104 PPCPRSQST 78
           PPC R + T
Sbjct: 847 PPCERGEGT 855


>sp|Q68W04|END3_RICTY Endonuclease III OS=Rickettsia typhi GN=nth
           PE=3 SV=1
          Length = 212

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +2

Query: 173 LDCA*QLPSPAY----FLLMKIVNMLKDNRKVVYLQKMLRVWTPHDVMDSMLW-IMHGRW 337
           L+C   +P+ A     F + K + + K N  V+  +++L++     +  +  W ++HGR+
Sbjct: 126 LNCLFAMPTMAVDTHVFRVSKRIGLAKGNTTVIVEKELLQIIDEKWLTHAHHWLVLHGRY 185

Query: 338 LCKQNMRSRSIVH 376
           +CK    S  I H
Sbjct: 186 ICKARKPSCRICH 198


>sp|O14511|NRG2_HUMAN Pro-neuregulin-2, membrane-bound isoform
           OS=Homo sapiens GN=NRG2 PE=2 SV=1
          Length = 850

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 23/69 (33%), Positives = 32/69 (46%)
 Frame = -2

Query: 248 GCLSACSQSSSTENKRDSEAVRHSPINEVAIEFPTNMFSFSSPTVELVPPCPRSQSTPSI 69
           G  S+ S SSS+ ++R S +   S  +  +    +N  S S P     PP PR Q  P  
Sbjct: 17  GRCSSYSDSSSSSSERSSSSSSSSSESGSSSRSSSNNSSISRPAA---PPEPRPQQQPQP 73

Query: 68  HDTAARVAS 42
              AAR A+
Sbjct: 74  RSPAARRAA 82


>sp|Q09901|YAJ1_SCHPO Uncharacterized family 31 glucosidase
           C30D11.01c OS=Schizosaccharomyces pombe GN=SPAC30D11.01c
           PE=2 SV=2
          Length = 993

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 20/60 (33%), Positives = 34/60 (56%)
 Frame = -2

Query: 236 ACSQSSSTENKRDSEAVRHSPINEVAIEFPTNMFSFSSPTVELVPPCPRSQSTPSIHDTA 57
           A S SSS+ +   S A  HS IN  +    T+++ FSS T  +VP    +Q  P++++++
Sbjct: 22  ARSHSSSSSSTSKSSASHHSSINSTS---ATSVYDFSSLTTPIVPTNGVAQE-PTLYESS 77


>sp|P93528|PHYC_SORBI Phytochrome C OS=Sorghum bicolor GN=PHYC PE=2
           SV=1
          Length = 1135

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 17/73 (23%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = -2

Query: 260 TQPCGCLSACSQSSSTENKRDSEAVRHSPIN-EVAIEFPTNM--FSFSSPTVELVPPCPR 90
           + P      CS+SSS  ++  +  V  +P++ ++  EF ++   F +SS     + P   
Sbjct: 2   SSPLNNRGTCSRSSSARSRHSARVVAQTPVDAQLHAEFESSQRNFDYSSSVSAAIRPSVS 61

Query: 89  SQSTPSIHDTAAR 51
           + +  + H T  R
Sbjct: 62  TSTVSTYHQTMQR 74


>sp|Q9WXU2|Y087_THEMA UPF0103 protein TM_0087 OS=Thermotoga maritima
           GN=TM_0087 PE=3 SV=1
          Length = 277

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = -2

Query: 209 NKRDSEAVRHSPINEVAIEFPTNMFSFSSPTVELVPPCPRSQSTPSIHDTAARVASFIAE 30
           N R +E    S I E +IE       F    V +VP C   QS     D A+ +A  +AE
Sbjct: 123 NSRYAEEDFMSHIREHSIEVQIPFLQFVFGEVSIVPICLMDQSPAVAEDLASALAKLVAE 182


>sp|Q66145|ORF2A_CMVMB RNA-directed RNA polymerase 2A OS=Cucumber
           mosaic virus (strain MB-8) GN=RNA2 PE=3 SV=1
          Length = 857

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -2

Query: 284 TP*ASFGDTQPCGCLSACSQSSSTENKRDSEAVRHSPINEVAIEFPTNMFSFSSPTVELV 105
           TP  S+G  +     +  SQ+ ST   R  ++ R S      +  PT + S  S T  +V
Sbjct: 790 TPTGSYGGGEEAE--TKVSQTKST-GTRSQKSQRESAFESQTVPLPTVLSSGWSGTDRVV 846

Query: 104 PPCPRSQST 78
           PPC R   T
Sbjct: 847 PPCERGGVT 855


>sp|P31629|ZEP2_HUMAN Transcription factor HIVEP2 OS=Homo sapiens
           GN=HIVEP2 PE=1 SV=2
          Length = 2446

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 52  LAAVSCMEGVLCERGQGGTNSTVGDEKENMLVGNSIATSLIGLCLTASESRL 207
           L  V  M G  CE  +     +VGDE++  ++ +SI ++ +G+  +  + +L
Sbjct: 681 LQGVPSMFGTTCENRKRRKEKSVGDEEDTPMICSSIVSTPVGIMASDYDPKL 732


>sp|Q700K0|SSPO_RAT SCO-spondin OS=Rattus norvegicus GN=Sspo PE=2 SV=1
          Length = 5141

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +3

Query: 249  ARLCISKRCSGCGLLTMLWTVCSG*CTVGGYVSRT*G 359
            A  C  + C G G     WT CS  C  GGY +RT G
Sbjct: 3015 AEFCTLRPCQGPGAAWSSWTPCSVPCG-GGYRNRTQG 3050


>sp|P41411|CDC18_SCHPO Cell division control protein 18
           OS=Schizosaccharomyces pombe GN=cdc18 PE=1 SV=1
          Length = 577

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = -2

Query: 206 KRDSEAVRHSPINEVA--IEFPTNMFSFSSPTVELVPPCPRSQSTPSIHDTA 57
           KR  + V    +N     + F T +   S+P  +L PP P + STPS + TA
Sbjct: 106 KRTIQIVTPKSLNRTCNPVPFATRLLQ-STPHRQLFPPTPSTPSTPSYNSTA 156
tr_hit_id B4GA58
Definition tr|B4GA58|B4GA58_DROPE GL11319 OS=Drosophila persimilis
Align length 66
Score (bit) 37.7
E-value 0.29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960088|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_H09, 5'
         (453 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4GA58|B4GA58_DROPE GL11319 OS=Drosophila persimilis GN=GL113...    38   0.29 
tr|B5DZQ3|B5DZQ3_DROPS GA24683 OS=Drosophila pseudoobscura pseud...    36   0.84 
tr|A8B216|A8B216_GIALA Putative uncharacterized protein OS=Giard...    35   2.5  
tr|O97215|O97215_LEIMA Putative uncharacterized protein L4830.11...    34   3.2  
tr|B4ILD3|B4ILD3_DROSE GM11729 OS=Drosophila sechellia GN=GM1172...    34   3.2  
tr|B0UDJ4|B0UDJ4_METS4 Putative uncharacterized protein OS=Methy...    33   7.1  
tr|A2ZTT9|A2ZTT9_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|B7I1C3|B7I1C3_BACCE Putative uncharacterized protein OS=Bacil...    33   9.3  
tr|B5Z594|B5Z594_BACCE Putative uncharacterized protein OS=Bacil...    33   9.3  
tr|Q2QV86|Q2QV86_ORYSJ Os12g0239200 protein OS=Oryza sativa subs...    33   9.3  
tr|O76733|O76733_DROVI Male-specific lethal-2 OS=Drosophila viri...    33   9.3  
tr|B6KCN8|B6KCN8_TOXGO MIF4G domain-containing protein OS=Toxopl...    33   9.3  
tr|B4LSG7|B4LSG7_DROVI Msl-2 OS=Drosophila virilis GN=Dvir\msl-2...    33   9.3  

>tr|B4GA58|B4GA58_DROPE GL11319 OS=Drosophila persimilis GN=GL11319
           PE=4 SV=1
          Length = 818

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
 Frame = -2

Query: 263 DTQPC-GCLSACSQSSSTENKRDSEAVRHSPINEVAIEFPTNM---FSFSSPTVELVPPC 96
           D +PC GC +A ++ SS    +DS   R  P N++  +FP N+   F  +SP V L P  
Sbjct: 64  DLRPCNGCKNATARKSSPPKAKDSVRSRCRPPNDLRPKFPVNVHCPFYDNSPDVRLGPTH 123

Query: 95  PRSQST 78
            R   T
Sbjct: 124 ARESPT 129


>tr|B5DZQ3|B5DZQ3_DROPS GA24683 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA24683 PE=4 SV=1
          Length = 1641

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -2

Query: 263 DTQPC-GCLSACSQSSSTENKRDSEAVRHSPINEVAIEFPTNM---FSFSSPTVELVPPC 96
           D +PC GC +A ++ SS    +D    R  P N++  +FP N+   F  +SP V L P  
Sbjct: 64  DLRPCNGCKNATARKSSPPKAKDKVRSRCRPPNDLRPKFPVNVHCPFYDNSPDVRLGPTH 123

Query: 95  PRSQST 78
            R   T
Sbjct: 124 ARESPT 129


>tr|A8B216|A8B216_GIALA Putative uncharacterized protein OS=Giardia
           lamblia ATCC 50803 GN=GL50803_88065 PE=4 SV=1
          Length = 622

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 17/53 (32%), Positives = 29/53 (54%)
 Frame = -2

Query: 263 DTQPCGCLSACSQSSSTENKRDSEAVRHSPINEVAIEFPTNMFSFSSPTVELV 105
           D++    L + S++ S  NK+     ++SP+++ +IE P   FS S P   LV
Sbjct: 338 DSKLVKLLQSASKNVSNPNKQKQNLQQYSPVDQTSIELPIFEFSVSDPLTTLV 390


>tr|O97215|O97215_LEIMA Putative uncharacterized protein L4830.11
           OS=Leishmania major GN=L4830.11 PE=4 SV=1
          Length = 768

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 34/112 (30%), Positives = 46/112 (41%)
 Frame = -2

Query: 407 RVDDLASSTYGVRYFSTSCSAYIATDRALSRAYCP*HREESTP*ASFGDTQPCGCLSACS 228
           R+    SS  G R  +  C  + A  RA S + C   R  STP   F  T P   LSA  
Sbjct: 22  RIGTRKSSRKGSRARTADCPTH-AGQRACSDSRCRRERPPSTPLLLFAPT-PLSPLSALL 79

Query: 227 QSSSTENKRDSEAVRHSPINEVAIEFPTNMFSFSSPTVELVPPCPRSQSTPS 72
            + S  + R+ +A RH          P +  +FS     L+ P PR  +  S
Sbjct: 80  CACS-RHVREPQATRHPSSPPCPNHQPPSASAFSLSLSSLMEPLPRQAAMRS 130


>tr|B4ILD3|B4ILD3_DROSE GM11729 OS=Drosophila sechellia GN=GM11729
           PE=4 SV=1
          Length = 1022

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/65 (35%), Positives = 31/65 (47%)
 Frame = -2

Query: 389 SSTYGVRYFSTSCSAYIATDRALSRAYCP*HREESTP*ASFGDTQPCGCLSACSQSSSTE 210
           SS YG  Y+ +S S Y A   + S +Y P     S   +S G T     +SA S SSS+ 
Sbjct: 90  SSGYGTSYYPSSYSTYSANSGSSSASYAP---RSSVQRSSVGTTSSTSYMSAGSVSSSSA 146

Query: 209 NKRDS 195
            +  S
Sbjct: 147 YRTSS 151


>tr|B0UDJ4|B0UDJ4_METS4 Putative uncharacterized protein
           OS=Methylobacterium sp. (strain 4-46) GN=M446_2255 PE=4
           SV=1
          Length = 233

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 9/93 (9%)
 Frame = +1

Query: 1   GEPQSASLVSSAMKEATLAAVSCMEGVLCERGQ---------GGTNSTVGDEKENMLVGN 153
           GE +++  V+ A      A    M G+ C  GQ             +  G  K  +LVG+
Sbjct: 81  GECRASRFVADAR-----ALTDLMAGIACRGGQTQIARVLRHARAEAAKGPVKALVLVGD 135

Query: 154 SIATSLIGLCLTASESRLFSVDEDCEHAERQPQ 252
           ++   L GLC  A E  L  V   C      PQ
Sbjct: 136 AVEEDLDGLCALAGELGLLGVPAFCFREGEDPQ 168


>tr|A2ZTT9|A2ZTT9_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_001961 PE=4 SV=1
          Length = 1047

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 12/123 (9%)
 Frame = +1

Query: 91  RGQGGTNSTVGDEKENMLVGNSIATSLIGLCLTASESRLFSVDEDCEH------------ 234
           R  GG     G E  N+  GN+IA+S  G     S    +   E  +H            
Sbjct: 116 RDGGGATGGGGSENNNINRGNTIASSSTGAFSRLSTEHSYDGVEAADHICGDCGLAARGC 175

Query: 235 AERQPQGCVSPKDAQGVDSSRCYGQYALDNARSVAM*AEHEVEKYRTP*VLDAKSSTLND 414
            + +PQ  +   + QG+  +  Y +  L   + +A+ AE  ++ YR   +L ++   L  
Sbjct: 176 RDGKPQATLEDAEEQGLQDN--YVKLWLKELKDLALDAEDVLDDYRYE-LLQSQVQELQG 232

Query: 415 DIP 423
           D P
Sbjct: 233 DYP 235


>tr|B7I1C3|B7I1C3_BACCE Putative uncharacterized protein OS=Bacillus
           cereus AH187 GN=BCAH187_C0153 PE=4 SV=1
          Length = 59

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 274 HLLEIHNLAVVFQHVHNLHQQKISGTRKLLGTVQSMKWQ*NFPLTCFPFH 125
           HL ++  +  +F H+H  ++ K   TRKL  TV+      N    CF F+
Sbjct: 11  HLKDLKFMTWLFPHIHQANKNKYPKTRKLTSTVE------NLQFFCFKFY 54


>tr|B5Z594|B5Z594_BACCE Putative uncharacterized protein OS=Bacillus
           cereus H3081.97 GN=BCH308197_A0107 PE=4 SV=1
          Length = 59

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 274 HLLEIHNLAVVFQHVHNLHQQKISGTRKLLGTVQSMKWQ*NFPLTCFPFH 125
           HL ++  +  +F H+H  ++ K   TRKL  TV+      N    CF F+
Sbjct: 11  HLKDLKFMTWLFPHIHQANKNKYPKTRKLTSTVE------NLQFFCFKFY 54


>tr|Q2QV86|Q2QV86_ORYSJ Os12g0239200 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0239200 PE=4 SV=1
          Length = 1184

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = -2

Query: 362 STSCSAYIATDRALSRAYCP*HREESTP*ASFGDTQPCGCLSACSQSSSTENKRDSEAVR 183
           + +C +Y  +  +++ + C  +REE++    F D  P  C+ ACS   S  +  +   + 
Sbjct: 583 TANCKSYAESGTSIA-SDCVEYREEASLGHQFNDEPPADCIKACSPLQSMVDTNEEMLLA 641

Query: 182 HSPIN 168
           H  +N
Sbjct: 642 HEVMN 646