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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960079
Clone id TST39A01NGRL0006_G23
Library
Length 681
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_G23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGAAGGGAATCGCAGGAAGCGAAGTCCCAAGATCCTCAAGCCTCGCGACCGAAGCAGCTC
TGAGCATTACATGCTAGACCCCCTCCTTGTACCCAGGCTCGAACAATTCTCCTACAACAA
CAGCATTTCTGATGTTGAGGCCTGCGTAGAGTACCTTCGCCACCATTACAAGGAGTATGC
CCGCAAGCAGCAGGGCCCCTTCCGCAAGCTTGTCATCAAAGCTATCCACATTGTCCGACA
GAAACAGAGGAGTTCACCCTTGCACAGAGAATTGAAGCTCCAAGTCCAAGAGGAAGATCA
TTCAAGTCGACGTCAAGGTGACTCTGCATCTGTGAGCTCTACTGATACTTCCAGCGATGA
AGCCCAAGAAGAGAGTTTTATGTCTGGTTTGGGTGATCCTCCTGGAGAGAGTGGCGATGA
TGGTGATTTGAGGGCCCAAACTTCAGTCAGGAAGAAGAGGAAACGAGGGCATGGTAGTGA
TAAAACAGGGTTTAAAAGCGATACAGACGAAGATGAGGTTCTAAGGCCTAGTCCCTCCTT
CAACTTGCTAAACTCATCTCTTCGTACCGCTTATCATGGGGCGCCTGCCAGCGGAAAGAA
AGATGTAGATGACTCTGAGAAGATTCCTACTAAGAAAGGAAATATTTCGTTAAAGCAGGT
CTCTGAAGATGGAGAGCCAAC
■■Homology search results ■■ -
sp_hit_id A2A9T0
Definition sp|A2A9T0|TBKB1_MOUSE TANK-binding kinase 1-binding protein OS=Mus musculus
Align length 49
Score (bit) 36.6
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960079|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_G23, 5'
         (681 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A2A9T0|TBKB1_MOUSE TANK-binding kinase 1-binding protein OS=M...    37   0.13 
sp|Q8K4G1|LTBP4_MOUSE Latent-transforming growth factor beta-bin...    35   0.28 
sp|Q6DG50|TBKB1_RAT TANK-binding kinase 1-binding protein OS=Rat...    35   0.37 
sp|P21705|DAL82_YEAST Protein DAL82 OS=Saccharomyces cerevisiae ...    32   2.4  
sp|Q9UGL9|CRCT1_HUMAN Cysteine-rich C-terminal protein 1 OS=Homo...    32   4.1  
sp|Q54N86|FBXAL_DICDI F-box/WD repeat-containing protein A-like ...    31   5.3  
sp|Q9NYJ7|DLL3_HUMAN Delta-like protein 3 OS=Homo sapiens GN=DLL...    31   5.3  
sp|A5PKJ4|MK07_BOVIN Mitogen-activated protein kinase 7 OS=Bos t...    31   5.4  
sp|O88671|DLL3_RAT Delta-like protein 3 OS=Rattus norvegicus GN=...    30   9.1  

>sp|A2A9T0|TBKB1_MOUSE TANK-binding kinase 1-binding protein OS=Mus
           musculus GN=Tbkbp1 PE=1 SV=1
          Length = 611

 Score = 36.6 bits (83), Expect = 0.13
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 145 RRVPSPP-LQGVCPQAAGPLPQACHQSYPHCPTETEEFTLAQRIEAPSP 288
           RR P PP  Q   PQ   P+P +C    P  P    E TLA+R+ A  P
Sbjct: 398 RRSPVPPSCQSPSPQRRSPVPPSCPAPQPRPPPPPGERTLAERVYAKPP 446


>sp|Q8K4G1|LTBP4_MOUSE Latent-transforming growth factor
           beta-binding protein 4 OS=Mus musculus GN=Ltbp4 PE=2
           SV=1
          Length = 1666

 Score = 35.4 bits (80), Expect = 0.28
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +1

Query: 145 RRVPSPPLQGVCPQAAGPLPQACHQSYPHCPTETE--EFTLAQRIEAPSPRGRSFKSTSR 318
           RRVP+P   G C    G     C   +   P  TE  +    +R+  P  RGR   +   
Sbjct: 635 RRVPTPCAPGRCENTPGSFRCVCGTGFQAGPRATECLDVDECRRVPPPCDRGRCENTPGS 694

Query: 319 *LCIC 333
            LC+C
Sbjct: 695 FLCVC 699


>sp|Q6DG50|TBKB1_RAT TANK-binding kinase 1-binding protein OS=Rattus
           norvegicus GN=Tbkbp1 PE=2 SV=1
          Length = 613

 Score = 35.0 bits (79), Expect = 0.37
 Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 145 RRVPSPP-LQGVCPQAAGPLPQACHQSYPHCPTETEEFTLAQRIEAPSP 288
           RR P PP  Q   PQ   P+P +C    P  P    E TLA+R  A  P
Sbjct: 398 RRSPVPPSCQSPSPQRRSPVPPSCPAPQPRPPPPPGERTLAERAYAKPP 446


>sp|P21705|DAL82_YEAST Protein DAL82 OS=Saccharomyces cerevisiae
           GN=DAL82 PE=1 SV=2
          Length = 255

 Score = 32.3 bits (72), Expect = 2.4
 Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
 Frame = +2

Query: 20  RSPKILKPRDRSSSEHYMLDPLLVPRLE-QFSYNNSISDVEACVEYLRHHYKEYARKQQG 196
           +SPKI K  +R S      + +L P++  + S+++S  ++E C++YL H+  E  +K+Q 
Sbjct: 174 KSPKINKGTNRFS------ETVLPPQMAAEQSWSDSNMELEICLDYL-HNELEVIKKRQE 226

Query: 197 PFRKLVIKAIHIV 235
            F   V+  ++I+
Sbjct: 227 DFECKVLNKLNII 239


>sp|Q9UGL9|CRCT1_HUMAN Cysteine-rich C-terminal protein 1 OS=Homo
           sapiens GN=CRCT1 PE=2 SV=1
          Length = 99

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
 Frame = -2

Query: 206 CGRGPAACGHTPCNGGEGT--------LRRPQHQKCCCC 114
           CG G   CG + C G   T         RR +   CCCC
Sbjct: 40  CGSGRGCCGDSGCCGSSSTSCCCFPRRRRRQRSSGCCCC 78


>sp|Q54N86|FBXAL_DICDI F-box/WD repeat-containing protein A-like
           protein OS=Dictyostelium discoideum GN=DDB_G0285445 PE=3
           SV=1
          Length = 1178

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
 Frame = +2

Query: 29  KILKPRDRSSSEHYMLDPLLVPRLEQFSYNNSISDVEACVEYLR--HHYKEYARKQQGPF 202
           ++  P   SSS  +  D  L+   +Q   NN+        EYLR   +++ Y  ++  PF
Sbjct: 635 QLSSPTSSSSSSTFSNDSALIDNNQQLDINNNNDQ-----EYLRFSENWESYITRK--PF 687

Query: 203 RKLVIKAIHIVRQKQRSSPLHRE 271
             L+   +H+ +  ++ SP + E
Sbjct: 688 LLLISSGLHLRKPPKKKSPRYLE 710


>sp|Q9NYJ7|DLL3_HUMAN Delta-like protein 3 OS=Homo sapiens GN=DLL3
           PE=1 SV=1
          Length = 618

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 14/49 (28%), Positives = 18/49 (36%)
 Frame = -2

Query: 197 GPAACGHTPCNGGEGTLRRPQHQKCCCCRRIVRAWVQGGGLACNAQSCF 51
           GP  C   PC  G      P+  +C C R       +  G+ C    CF
Sbjct: 274 GPGPCDGNPCANGGSCSETPRSFECTCPRGFYGLRCEVSGVTCADGPCF 322


>sp|A5PKJ4|MK07_BOVIN Mitogen-activated protein kinase 7 OS=Bos
           taurus GN=MAPK7 PE=2 SV=1
          Length = 781

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = +1

Query: 148 RVPSPPLQGVCPQAAGPLPQ-ACHQSYPHCPTETEEFTLAQRIEAPSP 288
           R PSPP  G   Q  GPLPQ AC    P       + T A  + AP P
Sbjct: 587 RPPSPPA-GPATQPTGPLPQPACPPPAPAAGPAAPQTTAASGLLAPQP 633


>sp|O88671|DLL3_RAT Delta-like protein 3 OS=Rattus norvegicus
           GN=Dll3 PE=2 SV=1
          Length = 589

 Score = 30.4 bits (67), Expect = 9.1
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = -2

Query: 197 GPAACGHTPCNGGEGTLRRPQHQKCCCCRRIVRAWVQGGGLACNAQSCF 51
           GP  C   PC  G      P   +C C R       +  G+ C    CF
Sbjct: 276 GPGPCDGNPCANGGSCSETPGSFECACPRGFYGPRCEVSGVTCADGPCF 324
tr_hit_id Q00T93
Definition tr|Q00T93|Q00T93_OSTTA 26S proteasome regulatory complex, ATPase RPT1 (ISS) OS=Ostreococcus tauri
Align length 68
Score (bit) 41.6
E-value 0.047
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960079|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_G23, 5'
         (681 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q00T93|Q00T93_OSTTA 26S proteasome regulatory complex, ATPase...    42   0.047
tr|Q7Q5U3|Q7Q5U3_ANOGA AGAP006205-PA OS=Anopheles gambiae GN=AGA...    41   0.062
tr|A8Q9U6|A8Q9U6_BRUMA ATPase, AAA family protein OS=Brugia mala...    40   0.18 
tr|B4KYP6|B4KYP6_DROMO GI12851 OS=Drosophila mojavensis GN=GI128...    37   1.5  
tr|B4LDW8|B4LDW8_DROVI GJ12996 OS=Drosophila virilis GN=GJ12996 ...    36   2.0  
tr|B4J2G9|B4J2G9_DROGR GH14878 OS=Drosophila grimshawi GN=GH1487...    36   2.0  
tr|Q3UGU1|Q3UGU1_MOUSE Putative uncharacterized protein OS=Mus m...    35   3.4  
tr|B2RU79|B2RU79_MOUSE Latent transforming growth factor beta bi...    35   3.4  
tr|B4I6C0|B4I6C0_DROSE GM22651 OS=Drosophila sechellia GN=GM2265...    35   5.8  
tr|B3MQ79|B3MQ79_DROAN GF20396 OS=Drosophila ananassae GN=GF2039...    34   7.6  
tr|B3MPA4|B3MPA4_DROAN GF14153 OS=Drosophila ananassae GN=GF1415...    34   9.8  
tr|B3M5R4|B3M5R4_DROAN GF10639 OS=Drosophila ananassae GN=GF1063...    34   9.8  
tr|B6KLF8|B6KLF8_TOXGO Putative uncharacterized protein OS=Toxop...    34   9.9  

>tr|Q00T93|Q00T93_OSTTA 26S proteasome regulatory complex, ATPase
           RPT1 (ISS) OS=Ostreococcus tauri GN=Ot17g01960 PE=3 SV=1
          Length = 930

 Score = 41.6 bits (96), Expect = 0.047
 Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 12/68 (17%)
 Frame = +2

Query: 77  DPLLVPRLEQF------------SYNNSISDVEACVEYLRHHYKEYARKQQGPFRKLVIK 220
           DPLL+PR+E F            +   ++ +V+A VE+LR  Y  YAR +   FRK V +
Sbjct: 23  DPLLIPRVEAFVRTVEDANDSPAAAERALRNVDAVVEHLRSTYAAYARVKVNVFRKTVER 82

Query: 221 AIHIVRQK 244
           A    R++
Sbjct: 83  ACDAARER 90


>tr|Q7Q5U3|Q7Q5U3_ANOGA AGAP006205-PA OS=Anopheles gambiae
           GN=AGAP006205 PE=3 SV=4
          Length = 1020

 Score = 41.2 bits (95), Expect = 0.062
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
 Frame = +2

Query: 77  DPLLVPRLEQFSYNN---SISDVEACVEYLRHHYKEYARKQQGPFRKLVIKAIHIV---- 235
           DP+++PR++Q+   N   +  D       L+  Y+EY R++  PFR LV +A   V    
Sbjct: 11  DPMIIPRVKQYLEENVHQTYVDTGVMARELQQRYREYNRRKANPFRLLVEEAYRTVLHSY 70

Query: 236 -RQKQRSSPLHRELKLQVQEEDHSSRR 313
                 SS +  E    V+  D S++R
Sbjct: 71  GLDSNPSSEVEEEAGSDVEVMDESAQR 97


>tr|A8Q9U6|A8Q9U6_BRUMA ATPase, AAA family protein OS=Brugia malayi
           GN=Bm1_47170 PE=3 SV=1
          Length = 739

 Score = 39.7 bits (91), Expect = 0.18
 Identities = 21/55 (38%), Positives = 27/55 (49%)
 Frame = +2

Query: 50  RSSSEHYMLDPLLVPRLEQFSYNNSISDVEACVEYLRHHYKEYARKQQGPFRKLV 214
           R +S  +  DP LVPR+      N   D E    YL+  Y EYAR++   F K V
Sbjct: 5   RKASSGFRSDPRLVPRIRDVWQANEACDAEDVAHYLQQTYPEYARRKFRDFLKSV 59


>tr|B4KYP6|B4KYP6_DROMO GI12851 OS=Drosophila mojavensis GN=GI12851
           PE=4 SV=1
          Length = 614

 Score = 36.6 bits (83), Expect = 1.5
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
 Frame = +2

Query: 77  DPLLVPRLEQF---SYNNSISDVEACVEYLRHHYKEYARKQQGPFRKLVIKAIHIVRQ 241
           D L+  R++Q+     + +  DV+   + L   Y EY+R++ GPFR+LV +A  IV +
Sbjct: 10  DHLITNRVKQYLEDHIDETYLDVKQMTKELMRKYPEYSRRKFGPFRQLVHQAFSIVSE 67


>tr|B4LDW8|B4LDW8_DROVI GJ12996 OS=Drosophila virilis GN=GJ12996
           PE=4 SV=1
          Length = 933

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +2

Query: 77  DPLLVPRLEQF---SYNNSISDVEACVEYLRHHYKEYARKQQGPFRKLVIKAIHIV 235
           D L+  R++Q+     + +  DV+   + L   Y EY+R++ GPFR+LV +A  IV
Sbjct: 10  DHLITNRVKQYLEEHIDETYLDVKQMTKELMRKYPEYSRRKFGPFRQLVHQAFSIV 65


>tr|B4J2G9|B4J2G9_DROGR GH14878 OS=Drosophila grimshawi GN=GH14878
           PE=4 SV=1
          Length = 957

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
 Frame = +2

Query: 77  DPLLVPRLEQF---SYNNSISDVEACVEYLRHHYKEYARKQQGPFRKLVIKAIHIV 235
           D L+  R++Q+     + +  DV+   + L   Y EY+R++ GPFR+LV +A  IV
Sbjct: 10  DHLITNRVKQYLEEHIDETYLDVKQMTKELMRKYPEYSRRKFGPFRQLVHQAFSIV 65


>tr|Q3UGU1|Q3UGU1_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Ltbp4 PE=2 SV=1
          Length = 1021

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +1

Query: 145 RRVPSPPLQGVCPQAAGPLPQACHQSYPHCPTETE--EFTLAQRIEAPSPRGRSFKSTSR 318
           RRVP+P   G C    G     C   +   P  TE  +    +R+  P  RGR   +   
Sbjct: 443 RRVPTPCAPGRCENTPGSFRCVCGTGFQAGPRATECLDVDECRRVPPPCDRGRCENTPGS 502

Query: 319 *LCIC 333
            LC+C
Sbjct: 503 FLCVC 507


>tr|B2RU79|B2RU79_MOUSE Latent transforming growth factor beta
           binding protein 4 OS=Mus musculus GN=Ltbp4 PE=2 SV=1
          Length = 1666

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +1

Query: 145 RRVPSPPLQGVCPQAAGPLPQACHQSYPHCPTETE--EFTLAQRIEAPSPRGRSFKSTSR 318
           RRVP+P   G C    G     C   +   P  TE  +    +R+  P  RGR   +   
Sbjct: 635 RRVPTPCAPGRCENTPGSFRCVCGTGFQAGPRATECLDVDECRRVPPPCDRGRCENTPGS 694

Query: 319 *LCIC 333
            LC+C
Sbjct: 695 FLCVC 699


>tr|B4I6C0|B4I6C0_DROSE GM22651 OS=Drosophila sechellia GN=GM22651
           PE=4 SV=1
          Length = 635

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
 Frame = +2

Query: 41  PRDRSSSEHYMLDPLLVPRLEQFSYNNSISDVEACVEYLR-------HHYKEYARKQQGP 199
           P  ++S E        V   ++ S+ + + D+E  ++ LR       H Y+++ RKQ  P
Sbjct: 352 PLFKNSEESLKRTQYFVTEFDKLSHADKVQDIELRMDQLRWLHATTDHEYRQHFRKQSIP 411

Query: 200 FRKLVIKAI 226
           F+K++  ++
Sbjct: 412 FKKVLTNSV 420


>tr|B3MQ79|B3MQ79_DROAN GF20396 OS=Drosophila ananassae GN=GF20396
            PE=4 SV=1
          Length = 3654

 Score = 34.3 bits (77), Expect = 7.6
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 148  RVPSPPLQGVCPQAAGPLPQACHQSYPHCPTETEE 252
            R P   L    P+A  PLP ACH+S P  PT +++
Sbjct: 1153 RPPPLALSLPLPEAVNPLPMACHESEPASPTPSKQ 1187