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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK960040
Clone id TST39A01NGRL0006_F06
Library
Length 688
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_F06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GGACGATCTTGCCTTGTGAAAAGGCAGAAGAGGGGATAATGATAGACAGGCTGCGTTCTT
ATCCACTTTGTCCCTTCGTGGGCAAAGTACTCACACGCGCACACCCATACGCAGACTCAC
AGAGCAAAGCCCTAAATTCTCTTCTCTTGGCATTTTGCGCGCGCTCATTCTCTGAAACTC
TCGTGCAAGAAAGCTGAGGTCCACCGATCCAGCCTAATTGTGCAGAGATTTGCAGGTTGT
TTCGCGCCACAGTGCAGATTTCACAGATGATTGTTGAGTTTCAACACTTCCAGCAGCAAT
AGAGACAACTATAGAGAGAACACACACATTTGAGGAAATGGTATTCTCCTTGAAAAGTGT
CTATTGATATGCCTCTCACATGTCAAAGCCGGGAGACGAGTTTGGGGTGGTGAAGTTGAC
CAACAACTGGATTTGTGCTGAGAGCATGGTACATTCAGGTTTATGCATGCTTCCGATGGG
TCTGGCTTCTCAACCTGCTACAGATGCCTGCCTCGAAGATGACAGCTTCCAGCATGACAT
TTCCCGCACCAAACACGATAGTATGGCATCGGAATGCTGTAATCTTTCTGAAGTATCACA
TGATGTAGCATGGCAAGAAAGGCAAAACATTGGATTTACAGATTTTGGTAGGTCAGGCTC
AAAGGGGAGTTTTTCCCGTGAAAGTAGT
■■Homology search results ■■ -
sp_hit_id B0KTW7
Definition sp|B0KTW7|Y1349_PSEPG UPF0176 protein PputGB1_1349 OS=Pseudomonas putida (strain GB-1)
Align length 83
Score (bit) 32.0
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960040|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_F06, 5'
         (688 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|B0KTW7|Y1349_PSEPG UPF0176 protein PputGB1_1349 OS=Pseudomona...    32   3.2  
sp|Q8EN69|LEUC_OCEIH 3-isopropylmalate dehydratase large subunit...    32   4.2  
sp|P63632|MURI_BRUSU Glutamate racemase OS=Brucella suis GN=murI...    31   7.1  
sp|B0CGZ3|MURI_BRUSI Glutamate racemase OS=Brucella suis (strain...    31   7.1  
sp|A5VQW7|MURI_BRUO2 Glutamate racemase OS=Brucella ovis (strain...    31   7.1  
sp|P63631|MURI_BRUME Glutamate racemase OS=Brucella melitensis G...    31   7.1  
sp|A9M5L1|MURI_BRUC2 Glutamate racemase OS=Brucella canis (strai...    31   7.1  
sp|Q57CU6|MURI_BRUAB Glutamate racemase OS=Brucella abortus GN=m...    31   7.1  
sp|Q2YRV4|MURI_BRUA2 Glutamate racemase OS=Brucella abortus (str...    31   7.1  
sp|A5W7H0|Y3956_PSEP1 UPF0176 protein Pput_3956 OS=Pseudomonas p...    30   9.2  
sp|Q88M17|Y1758_PSEPK UPF0176 protein PP_1758 OS=Pseudomonas put...    30   9.2  

>sp|B0KTW7|Y1349_PSEPG UPF0176 protein PputGB1_1349 OS=Pseudomonas
           putida (strain GB-1) GN=PputGB1_1349 PE=3 SV=1
          Length = 310

 Score = 32.0 bits (71), Expect = 3.2
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
 Frame = -3

Query: 554 VWCGKCHAGSCHLRGRHL*QVEKPDPSEAC---INLNVPCSQHKSS------CWSTSPPQ 402
           +W G C      +  RH     + D   AC   IN     S+H S       CW T   +
Sbjct: 219 LWDGDCFVFDNRVTVRHDLSEGEYDQCHACRHPINAQERASEHYSPGVSCPHCWDTLSEK 278

Query: 401 TRLPALTCERHINRHFSRRIPFP 333
           TR  A+  ++ I    +R +P P
Sbjct: 279 TRRSAIDRQKQIELAKARNLPHP 301


>sp|Q8EN69|LEUC_OCEIH 3-isopropylmalate dehydratase large subunit
           OS=Oceanobacillus iheyensis GN=leuC PE=3 SV=1
          Length = 468

 Score = 31.6 bits (70), Expect = 4.2
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 180 EFQRMSARKMPREENLGLCSVSLRMGVRV*VLCPRRDKVD 61
           E+   S RKM  EE + +C++S+  G R  ++ P +  VD
Sbjct: 203 EYTGESIRKMSMEERMTICNMSIEAGARAGLISPDQTTVD 242


>sp|P63632|MURI_BRUSU Glutamate racemase OS=Brucella suis GN=murI
           PE=3 SV=1
          Length = 277

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 6   ILPCEKAEEGIMIDRLRSYPLCPFVGKVLTRAHPYADSQSKALNSLLL--AFCARSFSET 179
           ++ C  A   ++ D  R+YP  PFVG V     P A+  S  L S+L       R+++  
Sbjct: 86  VIACNTASTLVLEDLRRAYPSVPFVGTV-PAIKPAAERTSSGLVSVLATPGTVKRAYTRD 144

Query: 180 LVQ 188
           L+Q
Sbjct: 145 LIQ 147


>sp|B0CGZ3|MURI_BRUSI Glutamate racemase OS=Brucella suis (strain
           ATCC 23445 / NCTC 10510) GN=murI PE=3 SV=1
          Length = 277

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 6   ILPCEKAEEGIMIDRLRSYPLCPFVGKVLTRAHPYADSQSKALNSLLL--AFCARSFSET 179
           ++ C  A   ++ D  R+YP  PFVG V     P A+  S  L S+L       R+++  
Sbjct: 86  VIACNTASTLVLEDLRRAYPSVPFVGMV-PAIKPAAERTSSGLVSVLATPGTVKRAYTRD 144

Query: 180 LVQ 188
           L+Q
Sbjct: 145 LIQ 147


>sp|A5VQW7|MURI_BRUO2 Glutamate racemase OS=Brucella ovis (strain
           ATCC 25840 / 63/290 / NCTC 10512) GN=murI PE=3 SV=1
          Length = 277

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 6   ILPCEKAEEGIMIDRLRSYPLCPFVGKVLTRAHPYADSQSKALNSLLL--AFCARSFSET 179
           ++ C  A   ++ D  R+YP  PFVG V     P A+  S  L S+L       R+++  
Sbjct: 86  VIACNTASTLVLEDLRRAYPSVPFVGTV-PAIKPAAERTSSGLVSVLATPGTVKRAYTRD 144

Query: 180 LVQ 188
           L+Q
Sbjct: 145 LIQ 147


>sp|P63631|MURI_BRUME Glutamate racemase OS=Brucella melitensis
           GN=murI PE=3 SV=1
          Length = 277

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 6   ILPCEKAEEGIMIDRLRSYPLCPFVGKVLTRAHPYADSQSKALNSLLL--AFCARSFSET 179
           ++ C  A   ++ D  R+YP  PFVG V     P A+  S  L S+L       R+++  
Sbjct: 86  VIACNTASTLVLEDLRRAYPSVPFVGTV-PAIKPAAERTSSGLVSVLATPGTVKRAYTRD 144

Query: 180 LVQ 188
           L+Q
Sbjct: 145 LIQ 147


>sp|A9M5L1|MURI_BRUC2 Glutamate racemase OS=Brucella canis (strain
           ATCC 23365 / NCTC 10854) GN=murI PE=3 SV=1
          Length = 277

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 6   ILPCEKAEEGIMIDRLRSYPLCPFVGKVLTRAHPYADSQSKALNSLLL--AFCARSFSET 179
           ++ C  A   ++ D  R+YP  PFVG V     P A+  S  L S+L       R+++  
Sbjct: 86  VIACNTASTLVLEDLRRAYPSVPFVGTV-PAIKPAAERTSSGLVSVLATPGTVKRAYTRD 144

Query: 180 LVQ 188
           L+Q
Sbjct: 145 LIQ 147


>sp|Q57CU6|MURI_BRUAB Glutamate racemase OS=Brucella abortus GN=murI
           PE=3 SV=1
          Length = 277

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 6   ILPCEKAEEGIMIDRLRSYPLCPFVGKVLTRAHPYADSQSKALNSLLL--AFCARSFSET 179
           ++ C  A   ++ D  R+YP  PFVG V     P A+  S  L S+L       R+++  
Sbjct: 86  VIACNTASTLVLEDLRRAYPSVPFVGTV-PAIKPAAERTSSGLVSVLATPGTVKRAYTRD 144

Query: 180 LVQ 188
           L+Q
Sbjct: 145 LIQ 147


>sp|Q2YRV4|MURI_BRUA2 Glutamate racemase OS=Brucella abortus (strain
           2308) GN=murI PE=3 SV=1
          Length = 277

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 6   ILPCEKAEEGIMIDRLRSYPLCPFVGKVLTRAHPYADSQSKALNSLLL--AFCARSFSET 179
           ++ C  A   ++ D  R+YP  PFVG V     P A+  S  L S+L       R+++  
Sbjct: 86  VIACNTASTLVLEDLRRAYPSVPFVGTV-PAIKPAAERTSSGLVSVLATPGTVKRAYTRD 144

Query: 180 LVQ 188
           L+Q
Sbjct: 145 LIQ 147


>sp|A5W7H0|Y3956_PSEP1 UPF0176 protein Pput_3956 OS=Pseudomonas
           putida (strain F1 / ATCC 700007) GN=Pput_3956 PE=3 SV=1
          Length = 310

 Score = 30.4 bits (67), Expect = 9.2
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
 Frame = -3

Query: 554 VWCGKCHAGSCHLRGRHL*QVEKPDPSEAC---INLNVPCSQHKSS------CWSTSPPQ 402
           +W G C      +  RH     + D   AC   IN     S+H S       CW +   +
Sbjct: 219 LWDGDCFVFDNRVTVRHDLSEGEYDQCHACRHPINAEERASEHYSPGVSCPHCWDSLSEK 278

Query: 401 TRLPALTCERHINRHFSRRIPFP 333
           TR  A+  ++ I    +R +P P
Sbjct: 279 TRRSAIDRQKQIELAKARNLPHP 301
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK960040|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_F06, 5'
         (688 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******