DK960015 |
Clone id |
TST39A01NGRL0006_E01 |
Library |
TST39 |
Length |
657 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_E01. 5' end sequence. |
Accession |
DK960015 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
ATTTGGTGTGGAGCTTCTGTGAAGGCGTCTTTGCACACGCCTCCTGGAGGAGCTTATCCG AACTTCTCGTCCGTGGCTCTTCCGGCTCCGGCGAAAATGAGAGAGTGCATCACCATCCAC ATTGTGCAGGGTGGGATTCAGGCCGGCAATGCCAGCTGGGAGCTTAACTGTCTCAAACAT GGGATCCAGGCAGAGGGTCCGATGGCAAGTGACAAGACTGCTGGAGGAGGAGATGAGGCG TTTAACACTTTTTTTAGTGAGACAGGCGCTGGAAAACGTGTGACAAGGGCCATCATTGTG GACCTGGAGCCAACTGTGATTGATGAGGAGCAAACTGGTACCTATAGGCAGCTTTTCCAC CCATAGCAGCTCATAACTGGCAAGGAGGATGCTGCCAACGACTTTGCCCGTGGTCATTAT ACCATTGGCAAAGAGATTGTGGACCGCTGCCTTGATCGCATCCGCAAATTGTGAGAGCAT TGCACAGGCCTGCAACGGTTTCTTGTCTTTGATGCTGCGAGATGTGGCACGTGGTCTGGC TTACGATCGATGCTTCTTGAAAGGGTCTCAGATGATTACTGTCAGAAGGCGAGGCTGAGA TATACTGCCTACTCTTCTCCGCAGGTGTCAACCTCTGTTGTGGAACCATACAATAGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P14641 |
Definition |
sp|P14641|TBA2_MAIZE Tubulin alpha-2 chain OS=Zea mays |
Align length |
187 |
Score (bit) |
288.0 |
E-value |
1.0e-77 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q84UZ5 |
Definition |
tr|Q84UZ5|Q84UZ5_CERRI Alpha-tubulin OS=Ceratopteris richardii |
Align length |
187 |
Score (bit) |
289.0 |
E-value |
1.0e-76 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK960015|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0006_E01, 5' (657 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q84UZ5|Q84UZ5_CERRI Alpha-tubulin OS=Ceratopteris richardii G... 289 1e-76 tr|Q65C78|Q65C78_SETVI Alpha tubulin OS=Setaria viridis GN=tua2 ... 289 1e-76 tr|Q5ME66|Q5ME66_PSEMZ Alpha tubulin 1 OS=Pseudotsuga menziesii ... 288 2e-76 tr|Q0WV25|Q0WV25_ARATH Tubulin alpha-2/alpha-4 chain OS=Arabidop... 288 2e-76 tr|B7TIW7|B7TIW7_BETVE Alpha tubulin OS=Betula verrucosa PE=2 SV=1 288 2e-76 tr|B6SPX4|B6SPX4_MAIZE Tubulin alpha-3 chain OS=Zea mays PE=2 SV=1 288 2e-76 tr|A9QVH4|A9QVH4_9CONI Alpha tubulin OS=Picea wilsonii GN=TUA1 P... 288 2e-76 tr|A9PL19|A9PL19_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU... 288 2e-76 tr|A9PL16|A9PL16_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU... 288 2e-76 tr|A9P849|A9P849_POPTR Putative uncharacterized protein OS=Popul... 288 2e-76 tr|A5HJR1|A5HJR1_THEHA TUA2 (TUA2-2) OS=Thellungiella halophila ... 288 2e-76 tr|A9PL15|A9PL15_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU... 288 2e-76 tr|A7QZH1|A7QZH1_VITVI Chromosome chr7 scaffold_275, whole genom... 288 2e-76 tr|A7QH45|A7QH45_VITVI Chromosome chr3 scaffold_95, whole genome... 288 2e-76 tr|A5YRY0|A5YRY0_POPTM Alpha-tubulin 3 OS=Populus tremuloides PE... 288 3e-76 tr|Q84XV0|Q84XV0_POPTM Alpha tubulin OS=Populus tremuloides PE=2... 287 5e-76 tr|Q84TK6|Q84TK6_POPTM Alpha-tubulin 1 OS=Populus tremuloides PE... 287 5e-76 tr|Q3EA24|Q3EA24_ARATH Uncharacterized protein At4g14960.1 OS=Ar... 287 5e-76 tr|Q1ZZV1|Q1ZZV1_BRACM Tubulin alpha-1 chain OS=Brassica rapa su... 287 5e-76 tr|A9PHZ8|A9PHZ8_POPTR Putative uncharacterized protein OS=Popul... 287 5e-76 tr|A9P817|A9P817_POPTR Putative uncharacterized protein OS=Popul... 287 5e-76 tr|A5YRY1|A5YRY1_POPTM Alpha-tubulin 5 OS=Populus tremuloides PE... 287 5e-76 tr|A4K4Y4|A4K4Y4_WHEAT Alpha tubulin-3B (Alpha tubulin-3A) (Alph... 287 5e-76 tr|Q9FVI3|Q9FVI3_ORYSA Alpha-tubulin OS=Oryza sativa GN=TubA1 PE... 286 6e-76 tr|Q8VXD1|Q8VXD1_TOBAC Alpha-tubulin OS=Nicotiana tabacum GN=tub... 286 6e-76 tr|Q8VXC9|Q8VXC9_TOBAC Alpha-tubulin OS=Nicotiana tabacum GN=tub... 286 6e-76 tr|Q75GI3|Q75GI3_ORYSJ Os03g0726100 protein OS=Oryza sativa subs... 286 6e-76 tr|Q38JI1|Q38JI1_SOLTU Putative uncharacterized protein OS=Solan... 286 6e-76 tr|Q10DN1|Q10DN1_ORYSJ Tubulin alpha-1 chain, putative, expresse... 286 6e-76 tr|A9PL18|A9PL18_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU... 286 6e-76
>tr|Q84UZ5|Q84UZ5_CERRI Alpha-tubulin OS=Ceratopteris richardii GN=TUA1 PE=2 SV=1 Length = 450
Score = 289 bits (739), Expect = 1e-76 Identities = 144/187 (77%), Positives = 160/187 (85%) Frame = +1
Query: 97 MRECITIHIVQGGIQAGNASWELNCLKHGIQAEGPMASDKTAGGGDEAFNTFFSETGAGK 276 MRECI+IHI Q GIQ GNA WEL CL+HGIQ +G M SDKT GGGD+AFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 277 RVTRAIIVDLEPTVIDEEQTGTYRQLFHP*QLITGKEDAANDFARGHYTIGKEIVDRCLD 456 V RAI VDLEPTVIDE +TGTYRQLFHP QLI+GKEDAAN+FARGHYTIGKEIVD CLD Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 457 RIRKL*EHCTGLQRFLVFDAARCGTWSGLRSMLLERVSDDYCQKARLRYTAYSSPQVSTS 636 RIRKL ++CTGLQ FLVF+A GT SGL S+LLER+S DY +K++L +T Y SPQVSTS Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 637 VVEPYNS 657 VVEPYNS Sbjct: 181 VVEPYNS 187
>tr|Q65C78|Q65C78_SETVI Alpha tubulin OS=Setaria viridis GN=tua2 PE=3 SV=1 Length = 451
Score = 289 bits (739), Expect = 1e-76 Identities = 143/187 (76%), Positives = 160/187 (85%) Frame = +1
Query: 97 MRECITIHIVQGGIQAGNASWELNCLKHGIQAEGPMASDKTAGGGDEAFNTFFSETGAGK 276 MRECI+IHI Q GIQ GNA WEL CL+HGIQA+G M DKT GGGD+AFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTVGGGDDAFNTFFSETGAGK 60
Query: 277 RVTRAIIVDLEPTVIDEEQTGTYRQLFHP*QLITGKEDAANDFARGHYTIGKEIVDRCLD 456 V RA+ VDLEPTVIDE +TGTYRQLFHP QLI+GKEDAAN+FARGHYTIGKEIVD CLD Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 457 RIRKL*EHCTGLQRFLVFDAARCGTWSGLRSMLLERVSDDYCQKARLRYTAYSSPQVSTS 636 RIRKL ++CTGLQ FLVF+A GT SGL S+LLER+S DY +K++L +T Y SPQVSTS Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 637 VVEPYNS 657 VVEPYNS Sbjct: 181 VVEPYNS 187
>tr|Q5ME66|Q5ME66_PSEMZ Alpha tubulin 1 OS=Pseudotsuga menziesii var. menziesii GN=AT1 PE=3 SV=1 Length = 451
Score = 288 bits (738), Expect = 2e-76 Identities = 143/187 (76%), Positives = 160/187 (85%) Frame = +1
Query: 97 MRECITIHIVQGGIQAGNASWELNCLKHGIQAEGPMASDKTAGGGDEAFNTFFSETGAGK 276 MRECI+IHI Q GIQ GNA WEL CL+HGIQ +G M SDKT GGGD+AFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 277 RVTRAIIVDLEPTVIDEEQTGTYRQLFHP*QLITGKEDAANDFARGHYTIGKEIVDRCLD 456 V RA+ VDLEPTVIDE +TGTYRQLFHP QLI+GKEDAAN+FARGHYTIGKEIVD CLD Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 457 RIRKL*EHCTGLQRFLVFDAARCGTWSGLRSMLLERVSDDYCQKARLRYTAYSSPQVSTS 636 RIRKL ++CTGLQ FLVF+A GT SGL S+LLER+S DY +K++L +T Y SPQVSTS Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 637 VVEPYNS 657 VVEPYNS Sbjct: 181 VVEPYNS 187
>tr|Q0WV25|Q0WV25_ARATH Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=At1g04820 PE=2 SV=1 Length = 450
Score = 288 bits (738), Expect = 2e-76 Identities = 143/187 (76%), Positives = 160/187 (85%) Frame = +1
Query: 97 MRECITIHIVQGGIQAGNASWELNCLKHGIQAEGPMASDKTAGGGDEAFNTFFSETGAGK 276 MRECI+IHI Q GIQ GNA WEL CL+HGIQ +G M SDKT GGGD+AFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 277 RVTRAIIVDLEPTVIDEEQTGTYRQLFHP*QLITGKEDAANDFARGHYTIGKEIVDRCLD 456 V RA+ VDLEPTVIDE +TGTYRQLFHP QLI+GKEDAAN+FARGHYTIGKEIVD CLD Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 457 RIRKL*EHCTGLQRFLVFDAARCGTWSGLRSMLLERVSDDYCQKARLRYTAYSSPQVSTS 636 RIRKL ++CTGLQ FLVF+A GT SGL S+LLER+S DY +K++L +T Y SPQVSTS Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 637 VVEPYNS 657 VVEPYNS Sbjct: 181 VVEPYNS 187
>tr|B7TIW7|B7TIW7_BETVE Alpha tubulin OS=Betula verrucosa PE=2 SV=1 Length = 450
Score = 288 bits (738), Expect = 2e-76 Identities = 143/187 (76%), Positives = 160/187 (85%) Frame = +1
Query: 97 MRECITIHIVQGGIQAGNASWELNCLKHGIQAEGPMASDKTAGGGDEAFNTFFSETGAGK 276 MRECI+IHI Q GIQ GNA WEL CL+HGIQ +G M SDKT GGGD+AFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 277 RVTRAIIVDLEPTVIDEEQTGTYRQLFHP*QLITGKEDAANDFARGHYTIGKEIVDRCLD 456 V RA+ VDLEPTVIDE +TGTYRQLFHP QLI+GKEDAAN+FARGHYTIGKEIVD CLD Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 457 RIRKL*EHCTGLQRFLVFDAARCGTWSGLRSMLLERVSDDYCQKARLRYTAYSSPQVSTS 636 RIRKL ++CTGLQ FLVF+A GT SGL S+LLER+S DY +K++L +T Y SPQVSTS Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 637 VVEPYNS 657 VVEPYNS Sbjct: 181 VVEPYNS 187
>tr|B6SPX4|B6SPX4_MAIZE Tubulin alpha-3 chain OS=Zea mays PE=2 SV=1 Length = 451
Score = 288 bits (738), Expect = 2e-76 Identities = 143/187 (76%), Positives = 160/187 (85%) Frame = +1
Query: 97 MRECITIHIVQGGIQAGNASWELNCLKHGIQAEGPMASDKTAGGGDEAFNTFFSETGAGK 276 MRECI+IHI Q GIQ GNA WEL CL+HGIQA+G M DKT GGGD+AFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQADGQMPGDKTIGGGDDAFNTFFSETGAGK 60
Query: 277 RVTRAIIVDLEPTVIDEEQTGTYRQLFHP*QLITGKEDAANDFARGHYTIGKEIVDRCLD 456 V RA+ VDLEPTVIDE +TGTYRQLFHP QLI+GKEDAAN+FARGHYTIGKEIVD CLD Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 457 RIRKL*EHCTGLQRFLVFDAARCGTWSGLRSMLLERVSDDYCQKARLRYTAYSSPQVSTS 636 RIRKL ++CTGLQ FLVF+A GT SGL S+LLER+S DY +K++L +T Y SPQVSTS Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 637 VVEPYNS 657 VVEPYNS Sbjct: 181 VVEPYNS 187
>tr|A9QVH4|A9QVH4_9CONI Alpha tubulin OS=Picea wilsonii GN=TUA1 PE=2 SV=1 Length = 451
Score = 288 bits (738), Expect = 2e-76 Identities = 143/187 (76%), Positives = 160/187 (85%) Frame = +1
Query: 97 MRECITIHIVQGGIQAGNASWELNCLKHGIQAEGPMASDKTAGGGDEAFNTFFSETGAGK 276 MRECI+IHI Q GIQ GNA WEL CL+HGIQ +G M SDKT GGGD+AFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 277 RVTRAIIVDLEPTVIDEEQTGTYRQLFHP*QLITGKEDAANDFARGHYTIGKEIVDRCLD 456 V RA+ VDLEPTVIDE +TGTYRQLFHP QLI+GKEDAAN+FARGHYTIGKEIVD CLD Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 457 RIRKL*EHCTGLQRFLVFDAARCGTWSGLRSMLLERVSDDYCQKARLRYTAYSSPQVSTS 636 RIRKL ++CTGLQ FLVF+A GT SGL S+LLER+S DY +K++L +T Y SPQVSTS Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 637 VVEPYNS 657 VVEPYNS Sbjct: 181 VVEPYNS 187
>tr|A9PL19|A9PL19_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TUA10 PE=2 SV=1 Length = 450
Score = 288 bits (738), Expect = 2e-76 Identities = 143/187 (76%), Positives = 160/187 (85%) Frame = +1
Query: 97 MRECITIHIVQGGIQAGNASWELNCLKHGIQAEGPMASDKTAGGGDEAFNTFFSETGAGK 276 MRECI++HI Q GIQ GNA WEL CL+HGIQ +G M SDKT GGGD+AFNTFFSETGAGK Sbjct: 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 277 RVTRAIIVDLEPTVIDEEQTGTYRQLFHP*QLITGKEDAANDFARGHYTIGKEIVDRCLD 456 V RAI VDLEPTVIDE +TGTYRQLFHP QLI+GKEDAAN+FARGHYTIGKEIVD CLD Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 457 RIRKL*EHCTGLQRFLVFDAARCGTWSGLRSMLLERVSDDYCQKARLRYTAYSSPQVSTS 636 RIRKL ++CTGLQ FLVF+A GT SGL S+LLER+S DY +K++L +T Y SPQVSTS Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 637 VVEPYNS 657 VVEPYNS Sbjct: 181 VVEPYNS 187
>tr|A9PL16|A9PL16_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TUA7 PE=2 SV=1 Length = 451
Score = 288 bits (738), Expect = 2e-76 Identities = 144/187 (77%), Positives = 159/187 (85%) Frame = +1
Query: 97 MRECITIHIVQGGIQAGNASWELNCLKHGIQAEGPMASDKTAGGGDEAFNTFFSETGAGK 276 MRECI+IHI Q GIQ GNA WEL CL+HGIQ +G M SDKT GGGD+AFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 277 RVTRAIIVDLEPTVIDEEQTGTYRQLFHP*QLITGKEDAANDFARGHYTIGKEIVDRCLD 456 V RAI VDLEPTVIDE +TGTYRQLFHP QLI+GKEDAAN+FARGHYTIGKEIVD CLD Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 457 RIRKL*EHCTGLQRFLVFDAARCGTWSGLRSMLLERVSDDYCQKARLRYTAYSSPQVSTS 636 RIRKL ++CTGLQ FLVF A GT SGL S+LLER+S DY +K++L +T Y SPQVSTS Sbjct: 121 RIRKLADNCTGLQGFLVFSAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 637 VVEPYNS 657 VVEPYNS Sbjct: 181 VVEPYNS 187
>tr|A9P849|A9P849_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 451
Score = 288 bits (738), Expect = 2e-76 Identities = 143/187 (76%), Positives = 160/187 (85%) Frame = +1
Query: 97 MRECITIHIVQGGIQAGNASWELNCLKHGIQAEGPMASDKTAGGGDEAFNTFFSETGAGK 276 MRECI+IHI Q GIQ GNA WEL CL+HGIQ +G M SDKT GGGD+AFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 277 RVTRAIIVDLEPTVIDEEQTGTYRQLFHP*QLITGKEDAANDFARGHYTIGKEIVDRCLD 456 V RA+ VDLEPTVIDE +TGTYRQLFHP QLI+GKEDAAN+FARGHYTIGKEIVD CLD Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD 120
Query: 457 RIRKL*EHCTGLQRFLVFDAARCGTWSGLRSMLLERVSDDYCQKARLRYTAYSSPQVSTS 636 RIRKL ++CTGLQ FLVF+A GT SGL S+LLER+S DY +K++L +T Y SPQVSTS Sbjct: 121 RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS 180
Query: 637 VVEPYNS 657 VVEPYNS Sbjct: 181 VVEPYNS 187
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