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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959953
Clone id TST39A01NGRL0006_B09
Library
Length 276
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_B09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GAACGGGGGAAATTGCCTGCACCACCTATTGCTCCGCCGTCACATTCTGATAGCACCGAG
TATGAAGGGACGGCATATGATGAGGATGATGCGCTAGATCCCGATTGGGGTTTTGCTCGG
TTGGGAGGAACGGACAAGGTGGTGAACCAGCTCAGCGCTCGTGACCTGAATGATCCACAA
GCGCCTTCAAATCAGACATCCTATTATAACATATCGCTTTGACGAGGAACTAAGACTGGC
TTGAACGTGGACGGATGCTATACAAGCAGCCCAAAG
■■Homology search results ■■ -
sp_hit_id Q6AY75
Definition sp|Q6AY75|PHF23_RAT PHD finger protein 23 OS=Rattus norvegicus
Align length 25
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959953|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_B09, 5'
         (276 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6AY75|PHF23_RAT PHD finger protein 23 OS=Rattus norvegicus G...    32   1.3  
sp|Q8BSN5|PHF23_MOUSE PHD finger protein 23 OS=Mus musculus GN=P...    32   1.3  
sp|Q6NWW9|FND3B_MOUSE Fibronectin type III domain-containing pro...    30   4.9  
sp|P50101|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15 O...    29   6.4  
sp|O55005|ROBO1_RAT Roundabout homolog 1 OS=Rattus norvegicus GN...    29   6.4  
sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Ro...    29   6.4  
sp|Q9Y6N7|ROBO1_HUMAN Roundabout homolog 1 OS=Homo sapiens GN=RO...    29   6.4  
sp|Q53EP0|FND3B_HUMAN Fibronectin type III domain-containing pro...    29   6.4  
sp|P70460|VASP_MOUSE Vasodilator-stimulated phosphoprotein OS=Mu...    29   8.4  

>sp|Q6AY75|PHF23_RAT PHD finger protein 23 OS=Rattus norvegicus
           GN=Phf23 PE=2 SV=1
          Length = 334

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 16  PAPPIAPPSHSDSTEYEGTAYDEDD 90
           P PP APPS +DS E E    +EDD
Sbjct: 165 PGPPRAPPSDTDSEEEEEEEEEEDD 189


>sp|Q8BSN5|PHF23_MOUSE PHD finger protein 23 OS=Mus musculus
           GN=Phf23 PE=2 SV=2
          Length = 401

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = +1

Query: 16  PAPPIAPPSHSDSTEYEGTAYDEDD 90
           P PP APPS +DS E E    +EDD
Sbjct: 234 PGPPRAPPSDTDSEEEEEEEEEEDD 258


>sp|Q6NWW9|FND3B_MOUSE Fibronectin type III domain-containing
           protein 3B OS=Mus musculus GN=Fndc3b PE=1 SV=1
          Length = 1207

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = -3

Query: 145 SPPC--PFLPTEQNPNRDL----AHHPHHMPSLHTRCYQNVT 38
           SP C  P  P+  +P   L     HHPH + + HT  Y  VT
Sbjct: 105 SPECYPPSYPSAMSPTHHLPPYLTHHPHFIQNSHTAYYPPVT 146


>sp|P50101|UBP15_YEAST Ubiquitin carboxyl-terminal hydrolase 15
           OS=Saccharomyces cerevisiae GN=UBP15 PE=1 SV=1
          Length = 1230

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 28  IAPPSHSDSTEYEGTAYDEDDALDPDWGFARLGGTDKVVNQLSARDLND-PQAPSNQTSY 204
           I+ P + D+      ++   +ALD DWGFA L   + + +    R L+   +   N T+Y
Sbjct: 119 ISRPGNGDTINLINKSHHRFNALDTDWGFANLIDLNNLKHPSKGRPLSFLNEGTLNITAY 178

Query: 205 YNI 213
             I
Sbjct: 179 VRI 181


>sp|O55005|ROBO1_RAT Roundabout homolog 1 OS=Rattus norvegicus
            GN=Robo1 PE=2 SV=1
          Length = 1651

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +1

Query: 13   LPAPPIAPPSHSDSTEYE---GTAYDED 87
            LP PP  PP HS+S EY      +YD++
Sbjct: 1186 LPPPPAHPPPHSNSEEYSMSVDESYDQE 1213


>sp|O89026|ROBO1_MOUSE Roundabout homolog 1 OS=Mus musculus GN=Robo1
            PE=1 SV=1
          Length = 1612

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +1

Query: 13   LPAPPIAPPSHSDSTEYE---GTAYDED 87
            LP PP  PP HS+S EY      +YD++
Sbjct: 1147 LPPPPAHPPPHSNSEEYNMSVDESYDQE 1174


>sp|Q9Y6N7|ROBO1_HUMAN Roundabout homolog 1 OS=Homo sapiens GN=ROBO1
            PE=1 SV=1
          Length = 1651

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +1

Query: 13   LPAPPIAPPSHSDSTEYE---GTAYDED 87
            LP PP  PP HS+S EY      +YD++
Sbjct: 1186 LPPPPAHPPPHSNSEEYNISVDESYDQE 1213


>sp|Q53EP0|FND3B_HUMAN Fibronectin type III domain-containing
           protein 3B OS=Homo sapiens GN=FNDC3B PE=1 SV=2
          Length = 1204

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 6/42 (14%)
 Frame = -3

Query: 145 SPPC--PFLPTEQNPNRDL----AHHPHHMPSLHTRCYQNVT 38
           SP C  P  P+  +P   L     HHPH + + HT  Y  VT
Sbjct: 105 SPECYPPSYPSAMSPTHHLPPYLTHHPHFIHNSHTAYYPPVT 146


>sp|P70460|VASP_MOUSE Vasodilator-stimulated phosphoprotein OS=Mus
           musculus GN=Vasp PE=1 SV=4
          Length = 375

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 178 VDHSGHER*AGSPPCPFLPTEQNPN 104
           V  +GH   A  PP P LPT Q PN
Sbjct: 189 VSGAGHGAGAAPPPAPPLPTAQGPN 213
tr_hit_id Q1D7K2
Definition tr|Q1D7K2|Q1D7K2_MYXXD DnaJ domain protein OS=Myxococcus xanthus (strain DK 1622)
Align length 31
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959953|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_B09, 5'
         (276 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1D7K2|Q1D7K2_MYXXD DnaJ domain protein OS=Myxococcus xanthus...    34   3.2  
tr|B8PJQ3|B8PJQ3_9APHY Predicted protein OS=Postia placenta Mad-...    34   3.2  
tr|Q2HHQ1|Q2HHQ1_CHAGB Putative uncharacterized protein OS=Chaet...    33   5.5  
tr|Q2HBY6|Q2HBY6_CHAGB Putative uncharacterized protein OS=Chaet...    33   5.5  
tr|A9TVY5|A9TVY5_PHYPA Predicted protein OS=Physcomitrella paten...    33   9.4  
tr|B6M7K1|B6M7K1_BRAFL Putative uncharacterized protein OS=Branc...    33   9.4  
tr|A2QMA2|A2QMA2_ASPNC Function: CMR1 OS=Aspergillus niger (stra...    33   9.4  

>tr|Q1D7K2|Q1D7K2_MYXXD DnaJ domain protein OS=Myxococcus xanthus
           (strain DK 1622) GN=MXAN_3168 PE=4 SV=1
          Length = 427

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 17/31 (54%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = +1

Query: 16  PAPPIAPPSHSDSTEYEGTAYDEDDALD-PD 105
           PAPP  PP   +  E E TA D DDA D PD
Sbjct: 312 PAPPAEPPEEEEEAEAEDTAEDADDADDTPD 342


>tr|B8PJQ3|B8PJQ3_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_100640 PE=4 SV=1
          Length = 334

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 3/86 (3%)
 Frame = +1

Query: 19  APPIAPPSHSDSTEYEGTAYDEDD---ALDPDWGFARLGGTDKVVNQLSARDLNDPQAPS 189
           +PP+A P H       G  Y  DD     D DW    +G   +V ++L       P   S
Sbjct: 134 SPPLATPPHQHPLSTHGDTYVSDDLNWQHDADWDTHAMGSCQRVAHRL------HPNDHS 187

Query: 190 NQTSYYNISL*RGTKTGLNVDGCYTS 267
           N+ S Y +S        LNV G   S
Sbjct: 188 NRNSSYPMS-------NLNVHGVQES 206


>tr|Q2HHQ1|Q2HHQ1_CHAGB Putative uncharacterized protein OS=Chaetomium
            globosum GN=CHGG_00253 PE=4 SV=1
          Length = 1521

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 13   LPAPPIAPPSHSDSTEYEGTAYDEDDALDPDWGFARLGGTDKVVNQLSARDLNDPQAPSN 192
            LP PP +PP+   +T YE T+YDE    +          T      + A +++  + P  
Sbjct: 851  LPTPPQSPPAAFFTTMYEKTSYDEPQDQE---------STYNAWQGVEAYNVSRQEGPRQ 901

Query: 193  QTSYYNI 213
             TS YN+
Sbjct: 902  ATSPYNV 908


>tr|Q2HBY6|Q2HBY6_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_02268 PE=4 SV=1
          Length = 1091

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = +1

Query: 13  LPAPPIAPPSHSDSTEYEGTAYDEDDALDPDWGFARLGGTDKVVNQLSARDLNDPQAPSN 192
           LP PP +PP+   +T YE T+YDE    +          T      + A +++  + P  
Sbjct: 467 LPTPPQSPPAAFFTTMYEKTSYDEPQDQE---------STYNAWQGVEAYNVSRQEGPRQ 517

Query: 193 QTSYYNI 213
            TS YN+
Sbjct: 518 ATSPYNV 524


>tr|A9TVY5|A9TVY5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_151591 PE=4 SV=1
          Length = 480

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +1

Query: 34  PPSHSDSTEYEGTAYDEDDALDPDW 108
           PP+H ++T  EG A DE+  +DP W
Sbjct: 114 PPAHHENTGAEGEADDEEPVMDPAW 138


>tr|B6M7K1|B6M7K1_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_79134 PE=4 SV=1
          Length = 609

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 3/72 (4%)
 Frame = +1

Query: 13  LPAPPIAPPSHSDSTEYEGTAYDEDDALDPDWGFARLGGTDKVVNQ---LSARDLNDPQA 183
           LP   + PPSH D      T Y+  +   PD      G  D   N+       D+NDP+ 
Sbjct: 27  LPDSKVLPPSHQDLDTECTTLYNGTEEQSPD----TFGSHDDPTNENQRTEEEDINDPRQ 82

Query: 184 PSNQTSYYNISL 219
            S Q+    + L
Sbjct: 83  ASQQSGQSTVDL 94


>tr|A2QMA2|A2QMA2_ASPNC Function: CMR1 OS=Aspergillus niger (strain
           CBS 513.88 / FGSC A1513) GN=An07g01380 PE=4 SV=1
          Length = 854

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
 Frame = +1

Query: 13  LPAPPIAPPSHSDSTEYEGTAYDE-DDALDPDWGFARLGGT-------DKVVNQLSARDL 168
           LP PP A P +  +T Y+G+  +    ALD + G   + GT       D ++  LS  + 
Sbjct: 162 LPDPPDAAPENPPTTSYDGSLIEAISPALDHESGIFSVDGTFFPEFIPDSLIPSLSRPNE 221

Query: 169 NDPQAPSNQTSYYNISL 219
            DP    N T  Y  +L
Sbjct: 222 FDPLNSINPTPDYRHNL 238