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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959928
Clone id TST39A01NGRL0006_A07
Library
Length 666
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_A07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CAAGACATGGACTGTGCTGTGAGAGTATGTTGTTGCTCAAGCTCATTCAATCTTGATGCT
TCACGGTCGCTATCCGTTTGGAAGCCCTTGTAATTGCAGGTGTGTGTGTGTGTGTGTGTG
TGTGCGCGCGCGCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AAATAACAATAGCGCCAGGATCTACCTGCTGGCATCATAGGGACACCTGCAGGCATCATA
GGGACATACGCTCATTCATCTTCACTGTCCCGTCCGTCTGGAAGCTCCTCTATCTGCAGG
AACAAAACCATCAATCAGAAGAAGGGTCCATCATTTTCGTTTTGCGCCCATCGCCCCTTC
ATCATCAAAGCCTCCATGCTTTCTTCCATCATACTCATCACCACAGTAAGGATGTGCATA
CACGCCTGTTCCAGAAATGCAGCGGGCCTCAAACATTGCTGAAACAGTAGATTGCTTTGA
GGTTTTGGCATGGAGCCCTCGTCGAGAAAGGCAAGCGCATCATTTTCTGATTCCTCTAGC
TCAGATGAAAACGGTGAGTTCAGTTATAAAAATTTCCGATTCCGGCCCAAAAAGAAGAGA
AGACAAGATGCTGGAAGGCGACATCAGAGGGGTCTTGTTTATGATTCCACACTTGGTATC
ACTTGT
■■Homology search results ■■ -
sp_hit_id O26918
Definition sp|O26918|Y830_METTH Uncharacterized protein MTH_830 OS=Methanobacterium thermoautotrophicum
Align length 99
Score (bit) 31.2
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959928|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_A07, 5'
         (666 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O26918|Y830_METTH Uncharacterized protein MTH_830 OS=Methanob...    31   5.2  
sp|Q2IPZ7|IF2_ANADE Translation initiation factor IF-2 OS=Anaero...    31   5.2  
sp|Q8DK04|IF2_THEEB Translation initiation factor IF-2 OS=Thermo...    31   6.7  
sp|P07993|POLG_PEMV Genome polyprotein (Fragment) OS=Pepper mott...    30   8.8  

>sp|O26918|Y830_METTH Uncharacterized protein MTH_830
           OS=Methanobacterium thermoautotrophicum GN=MTH_830 PE=4
           SV=1
          Length = 329

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
 Frame = +2

Query: 341 FAPIAPSSSKPPCFLPSYSSPQ*GCAYTPVPEMQRASNIAETVDCFEVLAWSPRRERQAH 520
           F P + SS+ PP  +  Y  P+       +PE+ R+ +    V+ F+     P R+ +  
Sbjct: 164 FLPSSASSASPPPVIARYDFPEEWNIIIAIPEIDRSVSGRREVNIFQEYCPLPLRDVERL 223

Query: 521 HFLIPLAQMKTV---------SSVIKISDSGPKRREDKM 610
             +I +  M  +          SV +I  +G KR E ++
Sbjct: 224 SHIILMKMMPAILEGDIEAFGESVNEIQGTGFKRIEREL 262


>sp|Q2IPZ7|IF2_ANADE Translation initiation factor IF-2
           OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=infB
           PE=3 SV=1
          Length = 950

 Score = 31.2 bits (69), Expect = 5.2
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
 Frame = +2

Query: 287 PLSAGTKPS-----IRRRVH---HFRFAPIAPSSSKPPCFLPSYSSPQ*GCAYTPVPEMQ 442
           P  A  +PS     +R+R H       AP AP S +P    P Y+ PQ   AY P P+  
Sbjct: 62  PKPAPARPSGPGFVVRKRAHVEPPTVTAPAAPPSPEPEYAEPQYAEPQAEQAYEPEPQAA 121

Query: 443 RASNIAE 463
           +    AE
Sbjct: 122 QPEAGAE 128


>sp|Q8DK04|IF2_THEEB Translation initiation factor IF-2
           OS=Thermosynechococcus elongatus (strain BP-1) GN=infB
           PE=3 SV=1
          Length = 957

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 5/127 (3%)
 Frame = +2

Query: 269 PVRLEAPLSAGTKPSIRRRVHHFRFAPIAPSSSKPPCFLPSYSSPQ*GCAYTPVPEMQRA 448
           P + E    A  KPS + R+   + A + P+ +KPP   P  + P+      P P+  RA
Sbjct: 182 PPKKEKGAIAAAKPSSQDRIEIVQRA-VPPAPAKPPEMAPKPALPE----LQPPPKPVRA 236

Query: 449 SN----IAETVDCFEVLAWSP-RRERQAHHFLIPLAQMKTVSSVIKISDSGPKRREDKML 613
            N    + ETV+  +  + S   ++R  H         +  S V+K+ +      E+  L
Sbjct: 237 PNPPKPVTETVEVLDDKSVSKVIKDRHRHKDFDEEESKRKSSRVVKLREEIIDEEEELEL 296

Query: 614 EGDIRGV 634
              + GV
Sbjct: 297 TSRLVGV 303


>sp|P07993|POLG_PEMV Genome polyprotein (Fragment) OS=Pepper mottle
           virus PE=3 SV=2
          Length = 381

 Score = 30.4 bits (67), Expect = 8.8
 Identities = 29/109 (26%), Positives = 49/109 (44%), Gaps = 3/109 (2%)
 Frame = +2

Query: 287 PLSAGTKPSIRRRVHHFRF---APIAPSSSKPPCFLPSYSSPQ*GCAYTPVPEMQRASNI 457
           P+    KP++R+ + HF     A I   + K P ++P Y           V  ++ AS  
Sbjct: 261 PIVENAKPTLRQIMAHFSDVAEAYIEMRNKKEP-YMPRYGL---------VRNLRDASLA 310

Query: 458 AETVDCFEVLAWSPRRERQAHHFLIPLAQMKTVSSVIKISDSGPKRRED 604
               D +EV + +P R R+A H  +  A +K+  S +   D G   +E+
Sbjct: 311 RYAFDFYEVTSRTPVRAREA-HIQMKAAALKSAQSRLFGLDGGVSTQEE 358
tr_hit_id Q9ILZ1
Definition tr|Q9ILZ1|Q9ILZ1_9POTV Polyprotein (Fragment) OS=Celery mosaic virus
Align length 109
Score (bit) 33.9
E-value 9.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959928|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_A07, 5'
         (666 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9ILZ1|Q9ILZ1_9POTV Polyprotein (Fragment) OS=Celery mosaic v...    34   9.3  
tr|Q9ILZ0|Q9ILZ0_9POTV Polyprotein (Fragment) OS=Celery mosaic v...    34   9.3  
tr|Q9ILY9|Q9ILY9_9POTV Polyprotein (Fragment) OS=Celery mosaic v...    34   9.3  
tr|Q9ILY8|Q9ILY8_9POTV Polyprotein (Fragment) OS=Celery mosaic v...    34   9.3  
tr|Q9ILY7|Q9ILY7_9POTV Polyprotein (Fragment) OS=Celery mosaic v...    34   9.3  
tr|Q9DJW3|Q9DJW3_9POTV Polyprotein (Fragment) OS=Celery mosaic v...    34   9.3  
tr|Q5KKZ9|Q5KKZ9_CRYNE Putative uncharacterized protein OS=Crypt...    34   9.4  

>tr|Q9ILZ1|Q9ILZ1_9POTV Polyprotein (Fragment) OS=Celery mosaic
           virus PE=3 SV=1
          Length = 490

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
 Frame = +2

Query: 287 PLSAGTKPSIRRRVHHFRFAPIA---PSSSKPPCFLPSYSSPQ*GCAYTPVPEMQRASNI 457
           PL    KP+ R+ +HHF    +A     ++K P ++P Y   +          ++  S  
Sbjct: 370 PLLEHAKPTFRQIMHHFSDVAVAYIEMRNTKGP-YMPGYGLKR---------NLRDRSLA 419

Query: 458 AETVDCFEVLAWSPRRERQAHHFLIPLAQMKTVSSVIKISDSGPKRRED 604
               D +E+ + SP R R+AH  +   A   T + ++ +  S   + ED
Sbjct: 420 CYAFDFYEMTSRSPERAREAHLQMKAAALRNTKTRLLGLDGSVSGKEED 468


>tr|Q9ILZ0|Q9ILZ0_9POTV Polyprotein (Fragment) OS=Celery mosaic
           virus PE=3 SV=1
          Length = 490

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
 Frame = +2

Query: 287 PLSAGTKPSIRRRVHHFRFAPIA---PSSSKPPCFLPSYSSPQ*GCAYTPVPEMQRASNI 457
           PL    KP+ R+ +HHF    +A     ++K P ++P Y   +          ++  S  
Sbjct: 370 PLLEHAKPTFRQIMHHFSDVAVAYIEMRNTKGP-YMPGYGLKR---------NLRDRSLA 419

Query: 458 AETVDCFEVLAWSPRRERQAHHFLIPLAQMKTVSSVIKISDSGPKRRED 604
               D +E+ + SP R R+AH  +   A   T + ++ +  S   + ED
Sbjct: 420 CYAFDFYEMTSRSPERAREAHLQMKAAALRNTKTRLLGLDGSVSGKEED 468


>tr|Q9ILY9|Q9ILY9_9POTV Polyprotein (Fragment) OS=Celery mosaic
           virus PE=3 SV=1
          Length = 490

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
 Frame = +2

Query: 287 PLSAGTKPSIRRRVHHFRFAPIA---PSSSKPPCFLPSYSSPQ*GCAYTPVPEMQRASNI 457
           PL    KP+ R+ +HHF    +A     ++K P ++P Y   +          ++  S  
Sbjct: 370 PLLEHAKPTFRQIMHHFSDVAVAYIEMRNTKGP-YMPGYGLKR---------NLRDRSLA 419

Query: 458 AETVDCFEVLAWSPRRERQAHHFLIPLAQMKTVSSVIKISDSGPKRRED 604
               D +E+ + SP R R+AH  +   A   T + ++ +  S   + ED
Sbjct: 420 CYAFDFYEMTSRSPERAREAHLQMKAAALRNTKTRLLGLDGSVSGKEED 468


>tr|Q9ILY8|Q9ILY8_9POTV Polyprotein (Fragment) OS=Celery mosaic
           virus PE=3 SV=1
          Length = 490

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
 Frame = +2

Query: 287 PLSAGTKPSIRRRVHHFRFAPIA---PSSSKPPCFLPSYSSPQ*GCAYTPVPEMQRASNI 457
           PL    KP+ R+ +HHF    +A     ++K P ++P Y   +          ++  S  
Sbjct: 370 PLLEHAKPTFRQIMHHFSDVAVAYIEMRNTKGP-YMPGYGLKR---------NLRDRSLA 419

Query: 458 AETVDCFEVLAWSPRRERQAHHFLIPLAQMKTVSSVIKISDSGPKRRED 604
               D +E+ + SP R R+AH  +   A   T + ++ +  S   + ED
Sbjct: 420 CYAFDFYEMTSRSPERAREAHLQMKAAALRNTKTRLLGLDGSVSGKEED 468


>tr|Q9ILY7|Q9ILY7_9POTV Polyprotein (Fragment) OS=Celery mosaic
           virus PE=3 SV=1
          Length = 490

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
 Frame = +2

Query: 287 PLSAGTKPSIRRRVHHFRFAPIA---PSSSKPPCFLPSYSSPQ*GCAYTPVPEMQRASNI 457
           PL    KP+ R+ +HHF    +A     ++K P ++P Y   +          ++  S  
Sbjct: 370 PLLEHAKPTFRQIMHHFSDVAVAYIEMRNTKGP-YMPGYGLKR---------NLRDRSLA 419

Query: 458 AETVDCFEVLAWSPRRERQAHHFLIPLAQMKTVSSVIKISDSGPKRRED 604
               D +E+ + SP R R+AH  +   A   T + ++ +  S   + ED
Sbjct: 420 CYAFDFYEMTSRSPERAREAHLQMKAAALRNTKTRLLGLDGSVSGKEED 468


>tr|Q9DJW3|Q9DJW3_9POTV Polyprotein (Fragment) OS=Celery mosaic
           virus PE=3 SV=1
          Length = 490

 Score = 33.9 bits (76), Expect = 9.3
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 3/109 (2%)
 Frame = +2

Query: 287 PLSAGTKPSIRRRVHHFRFAPIA---PSSSKPPCFLPSYSSPQ*GCAYTPVPEMQRASNI 457
           PL    KP+ R+ +HHF    +A     ++K P ++P Y   +          ++  S  
Sbjct: 370 PLLEHAKPTFRQIMHHFSDVAVAYIEMRNTKGP-YMPGYGLKR---------NLRDRSLA 419

Query: 458 AETVDCFEVLAWSPRRERQAHHFLIPLAQMKTVSSVIKISDSGPKRRED 604
               D +E+ + SP R R+AH  +   A   T + ++ +  S   + ED
Sbjct: 420 CYAFDFYEMTSRSPERAREAHLQMKAAALRNTKTRLLGLDGSVSGKEED 468


>tr|Q5KKZ9|Q5KKZ9_CRYNE Putative uncharacterized protein
           OS=Cryptococcus neoformans GN=CNBC5990 PE=4 SV=1
          Length = 562

 Score = 33.9 bits (76), Expect = 9.4
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
 Frame = -1

Query: 510 LSRRGLHAKTSKQSTVSAMFEARC---ISGTGVYAHPYCGDEYDGRKHGGFDDEGAMGAK 340
           L+RR ++  T  + ++   FE  C   +S   VYA   CG  + GR  G +    A+G  
Sbjct: 77  LTRRDMYLDTISRQSLDFDFEKLCSKSLSNINVYACLVCGKYFQGRGKGSWAYRHAVGDN 136

Query: 339 RK*WTLLLIDGFVPADRG 286
            + W  L  + F     G
Sbjct: 137 HRVWLNLDTEKFYVLPEG 154