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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959925
Clone id TST39A01NGRL0006_A04
Library
Length 687
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0006_A04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCTTGCTTGGCGTGCAGGTTTGGACTCTCGAGCACGACGACGATCTCAAGCACTCTGCA
GCATGTAGCTCTACATGAAGTGTGCTGTTGCGGTGTGAAAACAGGTCTGCAGCTCATTCG
CTGGGTACTTTCACTCAAAAGAAAAGAAAAAAGCTCAAACGGAAGTCGCCACGAACTGCT
GCTTAAGACTGTCTTTCATTGGGGTACAATGTCTTTTCTTTGCAGAAAAATTCCTTTGCC
TGTTGGCATAGTCATCCTTGCAACGCATCTCTAATGGAAAGCTTGTGTTTAAACTTTTAT
CGAAGCTGAGGCTTTCATTGGAGATCATGGCTGTTTATACCATTAAAATCCACGACCCAG
GATGAACTGCTTCCCTAGTGAATGATGGCAGATGAAGCCCACCACTTTAGGATGCAGCCA
ATTTTCCCTTCCGCGTGTGCCTGGTGCCGGAGAAGATGCTCTTATTCCTCCACAAGATCC
CTGTTTCTCTGTCGACAGACTTGCATGGATCTTACGCACATCTACGAAACGGAAGAATTT
TGCCGATGCTTTACATGTTTATGCATACTTGCACAGAAATGCTCTTGAAACTCACAGTCT
GTTGCAAAGCTACATAGTTTCCATGTTTGTAGAAGCAGGGAGCATGGTCGATGCACATAC
CGTCTTTGATAGAATGATATCTCCAAG
■■Homology search results ■■ -
sp_hit_id Q9FM64
Definition sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana
Align length 60
Score (bit) 37.7
E-value 0.058
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959925|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_A04, 5'
         (687 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protei...    38   0.058
sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protei...    37   0.13 
sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protei...    36   0.17 
sp|O26686|PRIL_METTH Probable DNA primase large subunit OS=Metha...    36   0.22 
sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protei...    35   0.37 
sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protei...    33   1.1  
sp|Q9LR72|PPR7_ARATH Putative pentatricopeptide repeat-containin...    33   1.4  
sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protei...    32   4.1  
sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protei...    32   4.1  
sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protei...    31   5.4  
sp|Q9FK33|PP427_ARATH Pentatricopeptide repeat-containing protei...    31   7.1  
sp|Q8S9D1|PP395_ARATH Pentatricopeptide repeat-containing protei...    31   7.1  
sp|Q9SUF9|PP305_ARATH Pentatricopeptide repeat-containing protei...    31   7.1  
sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protei...    31   7.1  
sp|Q9FXB9|PPR84_ARATH Pentatricopeptide repeat-containing protei...    30   9.2  
sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protei...    30   9.2  
sp|Q9SS60|PP210_ARATH Pentatricopeptide repeat-containing protei...    30   9.2  
sp|Q9M1C7|MRP9_ARATH Multidrug resistance-associated protein 9 O...    30   9.2  
sp|Q6CEV5|EPL1_YARLI Enhancer of polycomb-like protein 1 OS=Yarr...    30   9.3  

>sp|Q9FM64|PP431_ARATH Pentatricopeptide repeat-containing protein
           At5g55740, chloroplastic OS=Arabidopsis thaliana
           GN=CRR21 PE=2 SV=1
          Length = 830

 Score = 37.7 bits (86), Expect = 0.058
 Identities = 18/60 (30%), Positives = 33/60 (55%)
 Frame = +2

Query: 500 LAWILRTSTKRKNFADALHVYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRMI 679
           LA ++  + + +N      V  Y  R++ E+  +L S ++ M+ + GS+VDA  VFD  +
Sbjct: 378 LATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAKKVFDSTV 437


>sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein
           At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1
          Length = 741

 Score = 36.6 bits (83), Expect = 0.13
 Identities = 14/56 (25%), Positives = 33/56 (58%)
 Frame = +2

Query: 506 WILRTSTKRKNFADALHVYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDR 673
           ++L++  K K F +   ++ ++ +   +    + + ++SM+V+ G + DAH VFD+
Sbjct: 139 FVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDK 194


>sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein
           At1g09220, mitochondrial OS=Arabidopsis thaliana
           GN=PCMP-E25 PE=2 SV=1
          Length = 504

 Score = 36.2 bits (82), Expect = 0.17
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +2

Query: 587 ETHSLLQSYIVSMFVEAGSMVDAHTVFDRM 676
           E+H  +Q+ +V M++  G+M+DAH VFD M
Sbjct: 155 ESHVYVQTALVGMYLVGGNMIDAHKVFDEM 184


>sp|O26686|PRIL_METTH Probable DNA primase large subunit
           OS=Methanobacterium thermoautotrophicum GN=priB PE=3
           SV=1
          Length = 434

 Score = 35.8 bits (81), Expect = 0.22
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = +2

Query: 452 EDALIPPQDPCFSVDRLAWILRTSTKRKNFADALHVYAYLHRNALETHSLLQSYIVSMFV 631
           +++L+P      +V RL W LR   K  N  D    YAYL    +E + +L  YI++   
Sbjct: 48  DNSLLPASIAELAVKRLEWYLRRQRKDFNHRD----YAYLMNPEIEEYDVLAFYILAQAA 103

Query: 632 EAGSM 646
            AG M
Sbjct: 104 GAGFM 108


>sp|Q38959|PP257_ARATH Pentatricopeptide repeat-containing protein
           At3g26630, chloroplastic OS=Arabidopsis thaliana
           GN=PCMP-A6 PE=2 SV=1
          Length = 455

 Score = 35.0 bits (79), Expect = 0.37
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +2

Query: 509 ILRTSTKRKNFADALHVYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRM 676
           +L+ ST+  + +    V+ Y H+N       L + ++ M+ + GS+ DA  VFD M
Sbjct: 257 LLQASTQLGSLSMGRWVHDYAHKNGFVLDCFLGTALIDMYSKCGSLQDARKVFDVM 312


>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein
           At2g40720 OS=Arabidopsis thaliana GN=PCMP-E26 PE=2 SV=1
          Length = 860

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 500 LAWILRTSTKRKNFA--DALHVYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVF 667
           L+ ++    K  NF   +   ++ ++ RN+L+T S L++ ++ M+ + G  +DA  VF
Sbjct: 171 LSIVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVF 228


>sp|Q9LR72|PPR7_ARATH Putative pentatricopeptide repeat-containing
           protein At1g03510 OS=Arabidopsis thaliana GN=PCMP-E3
           PE=3 SV=1
          Length = 429

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +2

Query: 557 VYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRM 676
           +++Y  RN +E H  L+S +V  +   GS+V    VFD M
Sbjct: 204 IHSYAFRNLIEPHPQLKSGLVEAYGRCGSIVYVQLVFDSM 243


>sp|Q9FGR2|PP436_ARATH Pentatricopeptide repeat-containing protein
           At5g59600 OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1
          Length = 534

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 15/72 (20%), Positives = 36/72 (50%)
 Frame = +2

Query: 461 LIPPQDPCFSVDRLAWILRTSTKRKNFADALHVYAYLHRNALETHSLLQSYIVSMFVEAG 640
           ++P      S+     ++  + + + F     ++A+L  + +   + + + +V+ +VE G
Sbjct: 6   IVPSSFRLLSIGSYVELIEANGRDRLFCRGRVLHAHLVTSGIARLTRIAAKLVTFYVECG 65

Query: 641 SMVDAHTVFDRM 676
            ++DA  VFD M
Sbjct: 66  KVLDARKVFDEM 77


>sp|Q9SKQ4|PP167_ARATH Pentatricopeptide repeat-containing protein
           At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
          Length = 597

 Score = 31.6 bits (70), Expect = 4.1
 Identities = 26/111 (23%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
 Frame = +2

Query: 347 NPRPRMNCFPSE*WQMKPTTLGCSQFSLPRVPGAGEDALIPPQDPCFSVDRLAWILRTST 526
           NPR R  C          T    SQ ++ R+    +  +  P       D LA +L+   
Sbjct: 5   NPRKRPICVAQSFLSKHATKAELSQ-AVSRLESLTQQGIRLP------FDLLASLLQQCG 57

Query: 527 KRKNFADALHVYAYLHRNALET-HSLLQSYIVSMFVEAGSMVDAHTVFDRM 676
             K+      ++ +L     +  ++LL ++++ M+++ G  +DA  VFD+M
Sbjct: 58  DTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQM 108


>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic OS=Arabidopsis thaliana
           GN=PCMP-H90 PE=2 SV=1
          Length = 752

 Score = 31.2 bits (69), Expect = 5.4
 Identities = 14/40 (35%), Positives = 29/40 (72%)
 Frame = +2

Query: 557 VYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRM 676
           ++A++ R  L +++ +++ IV+M+V+ G +V A  VFD+M
Sbjct: 206 IHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQM 245
tr_hit_id A9SQ58
Definition tr|A9SQ58|A9SQ58_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 57
Score (bit) 43.9
E-value 0.01
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959925|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0006_A04, 5'
         (687 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SQ58|A9SQ58_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.010
tr|A9U2Q7|A9U2Q7_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.11 
tr|Q2L3D0|Q2L3D0_BRASY Selenium binding protein OS=Brachypodium ...    39   0.24 
tr|A7PPW6|A7PPW6_VITVI Chromosome chr18 scaffold_24, whole genom...    38   0.53 
tr|A7NVM6|A7NVM6_VITVI Chromosome chr18 scaffold_1, whole genome...    36   2.0  
tr|A5BML2|A5BML2_VITVI Putative uncharacterized protein OS=Vitis...    36   2.0  
tr|B8LKN6|B8LKN6_PICSI Putative uncharacterized protein OS=Picea...    36   2.6  
tr|A7R1A1|A7R1A1_VITVI Chromosome undetermined scaffold_342, who...    35   3.4  
tr|A5BIR2|A5BIR2_VITVI Putative uncharacterized protein OS=Vitis...    35   3.4  
tr|Q1DCR1|Q1DCR1_MYXXD Putative uncharacterized protein OS=Myxoc...    35   5.8  
tr|B7ZYC5|B7ZYC5_MAIZE Putative uncharacterized protein OS=Zea m...    34   7.7  
tr|A7QDH6|A7QDH6_VITVI Chromosome chr10 scaffold_81, whole genom...    34   7.7  
tr|A7PDJ4|A7PDJ4_VITVI Chromosome chr17 scaffold_12, whole genom...    34   7.7  

>tr|A9SQ58|A9SQ58_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_133419 PE=4 SV=1
          Length = 505

 Score = 43.9 bits (102), Expect = 0.010
 Identities = 19/57 (33%), Positives = 38/57 (66%)
 Frame = +2

Query: 509 ILRTSTKRKNFADALHVYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRMI 679
           +LR  T  K+ A+  +V+A++ ++     + + + +V+M+++ GS+VDA  VFDRM+
Sbjct: 55  LLRRCTHMKDLAEGKYVHAHMAKSDFVPTTFVLNALVNMYMKCGSLVDARQVFDRMV 111


>tr|A9U2Q7|A9U2Q7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_154890 PE=4 SV=1
          Length = 922

 Score = 40.4 bits (93), Expect = 0.11
 Identities = 20/61 (32%), Positives = 33/61 (54%)
 Frame = +2

Query: 503 AWILRTSTKRKNFADALHVYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRMIS 682
           A IL   T   +    L ++AY+ +  LE   L+ + ++SM+   GS+ +A  VFD + S
Sbjct: 257 ASILGACTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRS 316

Query: 683 P 685
           P
Sbjct: 317 P 317


>tr|Q2L3D0|Q2L3D0_BRASY Selenium binding protein OS=Brachypodium
           sylvaticum GN=sbp-1 PE=4 SV=1
          Length = 624

 Score = 39.3 bits (90), Expect = 0.24
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +2

Query: 533 KNFADALHVYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRM 676
           KN  DA  ++ +L  +  E  + L + ++ ++ + GS+V+AH VFD+M
Sbjct: 65  KNLDDARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKM 112


>tr|A7PPW6|A7PPW6_VITVI Chromosome chr18 scaffold_24, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021813001
           PE=4 SV=1
          Length = 619

 Score = 38.1 bits (87), Expect = 0.53
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +2

Query: 509 ILRTSTKRKNFADALHVYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRMIS 682
           +LR   + K+      ++ ++  N LE +  L++ +V M+   GS+ DA  VFD + S
Sbjct: 51  LLRACVESKSLTHGKQIHVHIRINGLENNEFLRTKLVHMYTSCGSLEDARGVFDGVSS 108


>tr|A7NVM6|A7NVM6_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015494001
           PE=4 SV=1
          Length = 758

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 548 ALHVYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRMISP 685
           A  V+     +  ++ S +QS +V M+++   + DAH VFDRM  P
Sbjct: 133 ARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEP 178


>tr|A5BML2|A5BML2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_008415 PE=4 SV=1
          Length = 760

 Score = 36.2 bits (82), Expect = 2.0
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 548 ALHVYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRMISP 685
           A  V+     +  ++ S +QS +V M+++   + DAH VFDRM  P
Sbjct: 133 ARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEP 178


>tr|B8LKN6|B8LKN6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 394

 Score = 35.8 bits (81), Expect = 2.6
 Identities = 17/60 (28%), Positives = 34/60 (56%)
 Frame = +2

Query: 497 RLAWILRTSTKRKNFADALHVYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRM 676
           R + +L   TK K  A+A  V+A++    +     +++ +++++V+ GS+ DA   FD M
Sbjct: 13  RSSLLLHLCTKAKTLAEAKQVHAHMLLTGILRIPSVETKLLNLYVKCGSLPDARLAFDNM 72


>tr|A7R1A1|A7R1A1_VITVI Chromosome undetermined scaffold_342, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00011842001 PE=4 SV=1
          Length = 652

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 14/43 (32%), Positives = 30/43 (69%)
 Frame = +2

Query: 557 VYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRMISP 685
           V+A++ ++ L+  + + + ++ M+ +AGS+ DA  VFDR++ P
Sbjct: 312 VHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKP 354


>tr|A5BIR2|A5BIR2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038740 PE=4 SV=1
          Length = 724

 Score = 35.4 bits (80), Expect = 3.4
 Identities = 14/43 (32%), Positives = 30/43 (69%)
 Frame = +2

Query: 557 VYAYLHRNALETHSLLQSYIVSMFVEAGSMVDAHTVFDRMISP 685
           V+A++ ++ L+  + + + ++ M+ +AGS+ DA  VFDR++ P
Sbjct: 312 VHAHMIKSGLKLIAFIGNTLLDMYAKAGSIDDAKRVFDRLVKP 354


>tr|Q1DCR1|Q1DCR1_MYXXD Putative uncharacterized protein
           OS=Myxococcus xanthus (strain DK 1622) GN=MXAN_1305 PE=4
           SV=1
          Length = 440

 Score = 34.7 bits (78), Expect = 5.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 519 VRKIHASLSTEKQGSCGGIRASSPAPGTRGRENWLHPKV 403
           VR +   L   ++G C GI+A+    G RG E+WL P V
Sbjct: 102 VRSVLEVLQAGEEGLCAGIQAALLCAGGRGLESWLRPMV 140