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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959915
Clone id TST39A01NGRL0005_P18
Library
Length 643
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_P18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AGAATACAAAGCTGGAAACTAAACTTGCACAAGAAAATGCAGCTTTGGATATTGTGAAAC
ACGAGTTGCTTGTGTTGAAAGAAGAAAAAGGTGATGCTTCAAATGGTCGACCAGCAAAGA
TGAGAGAATTGGTCTCTCATATGCAAGTGGAAAGTGGACGTCTCAATGTGGAGGTCGAGT
TGTACAAGAAAGAAATATATTACATAAAGAAAATCCTTGAAGGACAGGAGTTCCTAGATG
TGGGTGACGTTACTCACACAGATGTCAGAGTTGTGCAGGTAATGCTTTGTAATTTGCAAA
AGAGCCTTGTTATGCTGGAAGAAGAGGTCAGAGGGCTAAAAGAAGAAGTGAAAATGGAGT
TGGGGCAGAAAAGAAGATTACAACTCTTGGTAACAGACTTGCAACTTAATGGTCTACCAT
ACACCTTGCTCTTGAAAAACAAAATTCTTATGTTCTGCAGGGGAATGAAATTACTAGCCA
TTGAGTGGGAAAAAAAAGCTTTCAAGGAAAGTAATCAGATTGTTGAGTGCATTGAGAAAT
TAAGCAGAGCAGAGATATTGTGCAGTAGCTTAGATATCCAAGATATAGAGAATAAGAGCT
GTGTAGAAGAGGGCACACACCTAGCCTCAGAGCCAACAGGTGC
■■Homology search results ■■ -
sp_hit_id Q97WH0
Definition sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase OS=Sulfolobus solfataricus
Align length 126
Score (bit) 34.7
E-value 0.43
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959915|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_P18, 5'
         (643 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPas...    35   0.43 
sp|Q9NQX4|MYO5C_HUMAN Myosin-Vc OS=Homo sapiens GN=MYO5C PE=1 SV=1     35   0.43 
sp|O29043|Y1225_ARCFU Uncharacterized protein AF_1225 OS=Archaeo...    33   1.3  
sp|Q9MYL0|LEPR_MACMU Leptin receptor OS=Macaca mulatta GN=LEPR P...    31   4.8  
sp|Q03818|ATG16_YEAST Autophagy protein 16 OS=Saccharomyces cere...    31   4.8  
sp|A6ZML8|ATG16_YEAS7 Autophagy-related protein 16 OS=Saccharomy...    31   4.8  

>sp|Q97WH0|RAD50_SULSO DNA double-strand break repair rad50 ATPase
           OS=Sulfolobus solfataricus GN=rad50 PE=3 SV=1
          Length = 864

 Score = 34.7 bits (78), Expect = 0.43
 Identities = 33/126 (26%), Positives = 65/126 (51%), Gaps = 2/126 (1%)
 Frame = +3

Query: 225 QEFLDVGDVTHTDVRVVQVMLCNLQKSLVMLEEEVRGLKEEVKMELGQKRRLQLLVTDLQ 404
           +EF+ +   T  ++   +V L  ++K    +E+E+RGL+ E+K     ++ L+  + DL+
Sbjct: 533 EEFMRLSKYTKEELDKKRVKLDEMKKKKEEIEKEMRGLESELKGL--DRKALESKILDLE 590

Query: 405 LNGLPYTLLLKNKILM--FCRGMKLLAIEWEKKAFKESNQIVECIEKLSRAEILCSSLDI 578
              +    + K K ++  + R +KLL  + E K  +E   I++  E  +R   L +SLD 
Sbjct: 591 NKRVKLDEMKKKKGILEDYIRQVKLL--QEEVKNLREEVNIIQFDE--NRYNELKTSLDA 646

Query: 579 QDIENK 596
            ++  K
Sbjct: 647 YNLSLK 652


>sp|Q9NQX4|MYO5C_HUMAN Myosin-Vc OS=Homo sapiens GN=MYO5C PE=1 SV=1
          Length = 1742

 Score = 34.7 bits (78), Expect = 0.43
 Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
 Frame = +3

Query: 318  EEEVRGLKEEVKMELGQKRRLQLLV--TDLQLNGLPYTLLLKNK----ILMFCRGMKLL- 476
            E++++ LKEE+K    +K +LQ LV    +  +GL   +   +K    I  F + ++LL 
Sbjct: 1023 EKQIQSLKEEIKALKDEKMQLQHLVEGEHVTSDGLKAEVARLSKQVKTISEFEKEIELLQ 1082

Query: 477  --AIEWEKKAFKESNQIVECIEKLSRAEILCSSLDIQDIENKSCVEEGTHL 623
               I+ EK    +  ++ E + ++++   L  S DI+D+ ++  VE+  HL
Sbjct: 1083 AQKIDVEKHVQSQKREMREKMSEITKQ--LLESYDIEDVRSRLSVEDLEHL 1131


>sp|O29043|Y1225_ARCFU Uncharacterized protein AF_1225
           OS=Archaeoglobus fulgidus GN=AF_1225 PE=4 SV=1
          Length = 212

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
 Frame = +3

Query: 246 DVTHTDVRVVQVMLCNLQKSLVMLEEEVRGLKEEVKMELGQKRRLQLLVTDLQLNGLPYT 425
           DV  T +   Q    +L+K  + L++EV  LKE++K+   Q   L+  + DLQ       
Sbjct: 81  DVNETTIDY-QAYAASLEKENLALQKEVESLKEKLKISQEQIETLKSQLEDLQ------- 132

Query: 426 LLLKNKILMFCRGMKLLAIEWEKKAFKESNQIVECIEKLSRA--EILCSSLDIQDIENK 596
               NK        K+L I+ E     +  QI E  +KL RA  E+     D+ ++E K
Sbjct: 133 ----NK-------AKMLGIQNE----LQKQQIEELQKKLERAKTELQKKKSDLDELEEK 176


>sp|Q9MYL0|LEPR_MACMU Leptin receptor OS=Macaca mulatta GN=LEPR PE=2
           SV=2
          Length = 1163

 Score = 31.2 bits (69), Expect = 4.8
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +3

Query: 459 RGMKLLAIEWEKKAFKESNQIVECIEKLSRAEILCSSLDIQDIENKS 599
           + + LL I WEK  F E+N   +    LS  EI     D+ D ++KS
Sbjct: 547 KNIGLLKISWEKPVFPENNLQFQIRYGLSGKEIQWKMYDVYDAKSKS 593


>sp|Q03818|ATG16_YEAST Autophagy protein 16 OS=Saccharomyces
           cerevisiae GN=ATG16 PE=1 SV=1
          Length = 150

 Score = 31.2 bits (69), Expect = 4.8
 Identities = 25/88 (28%), Positives = 41/88 (46%)
 Frame = +3

Query: 249 VTHTDVRVVQVMLCNLQKSLVMLEEEVRGLKEEVKMELGQKRRLQLLVTDLQLNGLPYTL 428
           V+H D  +  + +  LQK L   E+E+R LKE + ++     RL     D  ++G     
Sbjct: 58  VSHDDALLNTLAI--LQKELKSKEQEIRRLKEVIALKNKNTERL----NDELISGTIENN 111

Query: 429 LLKNKILMFCRGMKLLAIEWEKKAFKES 512
           +L+ K+    +    L   W KK  KE+
Sbjct: 112 VLQQKLSDLKKEHSQLVARWLKKTEKET 139


>sp|A6ZML8|ATG16_YEAS7 Autophagy-related protein 16 OS=Saccharomyces
           cerevisiae (strain YJM789) GN=ATG16 PE=3 SV=1
          Length = 150

 Score = 31.2 bits (69), Expect = 4.8
 Identities = 25/88 (28%), Positives = 41/88 (46%)
 Frame = +3

Query: 249 VTHTDVRVVQVMLCNLQKSLVMLEEEVRGLKEEVKMELGQKRRLQLLVTDLQLNGLPYTL 428
           V+H D  +  + +  LQK L   E+E+R LKE + ++     RL     D  ++G     
Sbjct: 58  VSHDDALLNTLAI--LQKELKSKEQEIRRLKEVIALKNKNTERL----NDELISGTIENN 111

Query: 429 LLKNKILMFCRGMKLLAIEWEKKAFKES 512
           +L+ K+    +    L   W KK  KE+
Sbjct: 112 VLQQKLSDLKKEHSQLVARWLKKTEKET 139
tr_hit_id A4QRL5
Definition tr|A4QRL5|A4QRL5_MAGGR Putative uncharacterized protein OS=Magnaporthe grisea
Align length 142
Score (bit) 37.4
E-value 0.78
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959915|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_P18, 5'
         (643 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4QRL5|A4QRL5_MAGGR Putative uncharacterized protein OS=Magna...    37   0.78 
tr|B1XIM8|B1XIM8_SYNP2 Putative cobalt transport protein OS=Syne...    36   1.7  
tr|A0E8Q5|A0E8Q5_PARTE Chromosome undetermined scaffold_83, whol...    35   3.0  
tr|Q9KGB4|Q9KGB4_BACHD BH0193 protein OS=Bacillus halodurans GN=...    35   3.9  
tr|Q10XV9|Q10XV9_TRIEI Exonuclease SbcC OS=Trichodesmium erythra...    35   3.9  
tr|Q9Z9U5|Q9Z9U5_BACHD YjdC protein OS=Bacillus halodurans GN=yj...    35   3.9  
tr|Q7R9J4|Q7R9J4_PLAYO Putative uncharacterized protein PY06868 ...    35   5.1  
tr|B0EI40|B0EI40_ENTDI Phospholipid-transporting ATPase, putativ...    35   5.1  
tr|Q9P0E7|Q9P0E7_HUMAN HSPC089 (Fragment) OS=Homo sapiens PE=2 SV=1    35   5.1  
tr|Q4RJ17|Q4RJ17_TETNG Chromosome 1 SCAF15039, whole genome shot...    34   6.6  
tr|Q2NJJ9|Q2NJJ9_AYWBP Putative uncharacterized protein OS=Aster...    34   6.6  
tr|Q0IZ79|Q0IZ79_ORYSJ Os10g0124300 protein OS=Oryza sativa subs...    34   6.6  
tr|B6AJH8|B6AJH8_9CRYT Putative uncharacterized protein OS=Crypt...    34   8.7  

>tr|A4QRL5|A4QRL5_MAGGR Putative uncharacterized protein
            OS=Magnaporthe grisea GN=MGG_03548 PE=4 SV=1
          Length = 1645

 Score = 37.4 bits (85), Expect = 0.78
 Identities = 36/142 (25%), Positives = 65/142 (45%), Gaps = 18/142 (12%)
 Frame = +3

Query: 261  DVRVVQVMLCNLQKSLVMLEEEVRGLKEEVKMELGQKRRLQLLVTDLQLNGLPYTLLLKN 440
            DV VV   L +L+ +   L+ EVR L+EE K   G+ R+++  + D +L+G    LL + 
Sbjct: 866  DVHVVNQELVDLRTTKTKLDSEVRRLREENKSLAGRLRQVEAELQDAKLHGQDTALLDQE 925

Query: 441  KILMFCRGMK------------------LLAIEWEKKAFKESNQIVECIEKLSRAEILCS 566
            ++ +     K                  L  +E E +  K+ +   + +E L R +I+ +
Sbjct: 926  RMDLLTAKSKLDGDVRRLGDQNRSLTSRLREVETELRLLKQQDDHTKQLE-LQRVDIISA 984

Query: 567  SLDIQDIENKSCVEEGTHLASE 632
               +++ E +   EE   L SE
Sbjct: 985  KSRLEN-ELRRVKEENVVLTSE 1005


>tr|B1XIM8|B1XIM8_SYNP2 Putative cobalt transport protein
           OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
           PR-6) GN=SYNPCC7002_A2149 PE=4 SV=1
          Length = 284

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
 Frame = +3

Query: 276 QVMLCNLQKSLVMLEEEVRGLKEEVKMELGQKRRLQLLVTDLQLN---GLPYTLLLKNKI 446
           Q+       +L +L      +   ++  LG  RRL++ VT++ L     L +  L+  +I
Sbjct: 135 QIFTLLYSTNLYLLTTAAEEITTGLEFLLGPLRRLKVPVTEILLTLTLSLRFIPLVLEEI 194

Query: 447 LMFCRGMKLLAIEWEKKAFKESNQIVECIEK------LSRAEILCSSLDIQ 581
               R ++  AI W+   FK+S Q+   + +      L RAE + +++DI+
Sbjct: 195 QNLTRSVRTRAIAWKTLGFKQSAQLWLMVSEKLLENLLMRAEQMATAMDIR 245


>tr|A0E8Q5|A0E8Q5_PARTE Chromosome undetermined scaffold_83, whole
            genome shotgun sequence OS=Paramecium tetraurelia
            GN=GSPATT00024401001 PE=4 SV=1
          Length = 2921

 Score = 35.4 bits (80), Expect = 3.0
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +3

Query: 267  RVVQVMLCNLQKSLVMLEEEVRGLKEEVKMELGQKRRLQLLVTDLQLNGLPYTLLLKN 440
            R+++  L N Q+ LV  EE    LK+E +   GQK + QL + D+ L  + Y  L+ N
Sbjct: 2684 RIIKQGLFNKQEELVKQEEP---LKQEEEQSKGQKLQRQLTIQDIGLKSMLYRKLISN 2738


>tr|Q9KGB4|Q9KGB4_BACHD BH0193 protein OS=Bacillus halodurans
           GN=BH0193 PE=4 SV=1
          Length = 683

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
 Frame = +3

Query: 294 LQKSLVMLEEEVRGLKEEVKMELGQKRRLQLLVTDLQLNGLPYTLLLKNKILMFCRGMKL 473
           +Q+   + +EEV  LK  +      +++L L  TD  +  +PYTLLL  K +   R +  
Sbjct: 178 IQRVAGITKEEVGELKRRIHT---LEQKLNLTFTDENIQSMPYTLLLILKRIKLGRLINR 234

Query: 474 LAIEWEK----KAFKESNQIVECIEKLSRAEILCSSL 572
            +I +E+    K +  + +++   E++ R E L  +L
Sbjct: 235 FSIHYEELSDTKQYHATEELLSGFEEIPREERLFITL 271


>tr|Q10XV9|Q10XV9_TRIEI Exonuclease SbcC OS=Trichodesmium erythraeum
            (strain IMS101) GN=Tery_3877 PE=4 SV=1
          Length = 1016

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 25/120 (20%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
 Frame = +3

Query: 246  DVTHTDVRVVQVMLCNLQKSLVMLEEEVRGLKEEVKMELGQKR-RLQLLVTDLQLNGLPY 422
            ++ +  ++  ++ L  ++  +  +EE++ GLK++++++    + + +++V + ++  + Y
Sbjct: 652  EIKYGQIKDAEIKLGKVRALMPEIEEKIVGLKQDLELQKQSSQIQQEIVVIEREIAEIGY 711

Query: 423  TLLLKNKILMFCRGMK--LLAIEWEKKAFKESNQIVECIEKLSRAEILCSSLDIQDIENK 596
             L L N + +  R  +  L  IE  ++A K+   ++E I +L +A I     D+ DI+++
Sbjct: 712  DLELHNNVRLELRKAQFWLTKIEKLRQAHKQYPYLIERINEL-KAVIENRQQDLTDIKSQ 770


>tr|Q9Z9U5|Q9Z9U5_BACHD YjdC protein OS=Bacillus halodurans GN=yjdC
           PE=4 SV=1
          Length = 444

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
 Frame = +3

Query: 294 LQKSLVMLEEEVRGLKEEVKMELGQKRRLQLLVTDLQLNGLPYTLLLKNKILMFCRGMKL 473
           +Q+   + +EEV  LK  +      +++L L  TD  +  +PYTLLL  K +   R +  
Sbjct: 178 IQRVAGITKEEVGELKRRIHT---LEQKLNLTFTDENIQSMPYTLLLILKRIKLGRLINR 234

Query: 474 LAIEWEK----KAFKESNQIVECIEKLSRAEILCSSL 572
            +I +E+    K +  + +++   E++ R E L  +L
Sbjct: 235 FSIHYEELSDTKQYHATEELLSGFEEIPREERLFITL 271


>tr|Q7R9J4|Q7R9J4_PLAYO Putative uncharacterized protein PY06868
           OS=Plasmodium yoelii yoelii GN=PY06868 PE=4 SV=1
          Length = 653

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
 Frame = -3

Query: 302 LLQITKHYLHNSDI---CVSNV-THI*ELLSFKDFLYVIYFFLVQLDLHIETSTFHLHMR 135
           ++ I   +L+  D+   C  N+ ++   L   KD +   Y+FL++L   I      L++ 
Sbjct: 331 IINIFISFLNKKDVLNFCEQNIKSYFPTLCDSKDLIITKYYFLLKL---IRKKNISLNLL 387

Query: 134 DQFSHLCWXXXXXXXXXXFQHKQLVFHNIQSC 39
           D + HLC            Q   L+  NIQ C
Sbjct: 388 DIYIHLCTHKNSEVIKECPQQTTLLIENIQLC 419


>tr|B0EI40|B0EI40_ENTDI Phospholipid-transporting ATPase, putative
           OS=Entamoeba dispar SAW760 GN=EDI_332110 PE=4 SV=1
          Length = 1095

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
 Frame = +3

Query: 291 NLQKSLVMLEEEVRGLKEEVK-------MELGQKRRLQLLVTDLQLNGLPYTLLLKNKIL 449
           N+QK  +  +E+++  K +VK        ELG   R+  ++TD        T  L NK L
Sbjct: 341 NIQKRNIERDEDMKNKKGKVKGKNAGLNEELG---RISHILTDK-------TGTLTNKYL 390

Query: 450 MFCR---GMKLLAIEWEKKAFKESNQIVECIEKLSRAEILCSSLDIQDIENKSCVEE 611
           +F +   G K+   E ++++F+E  +I+E  E+          +DI +IE K  +E+
Sbjct: 391 VFTKCSIGGKIYGKEEKEESFEEEEEIIENKEEE-------EEIDIVEIETKEIIED 440


>tr|Q9P0E7|Q9P0E7_HUMAN HSPC089 (Fragment) OS=Homo sapiens PE=2 SV=1
          Length = 290

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 9/111 (8%)
 Frame = +3

Query: 318 EEEVRGLKEEVKMELGQKRRLQLLV--TDLQLNGLPYTLLLKNK----ILMFCRGMKLL- 476
           E++++ LKEE+K    +K +LQ LV    +  +GL   +   +K    I  F + ++LL 
Sbjct: 76  EKQIQSLKEEIKALKDEKMQLQHLVEGEHVTSDGLKAEVARLSKQVKTISEFEKEIELLQ 135

Query: 477 --AIEWEKKAFKESNQIVECIEKLSRAEILCSSLDIQDIENKSCVEEGTHL 623
              I+ EK    +  ++ E + ++++   L  S DI+D+ ++  VE+  HL
Sbjct: 136 AQKIDVEKHVQSQKREMREKMSEITKQ--LLESYDIEDVRSRLSVEDLEHL 184


>tr|Q4RJ17|Q4RJ17_TETNG Chromosome 1 SCAF15039, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00033628001
           PE=4 SV=1
          Length = 2009

 Score = 34.3 bits (77), Expect = 6.6
 Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
 Frame = +3

Query: 237 DVGDVTHTDVRVVQVMLCNLQKSLVMLEEEVRGLKEEV--KMELGQKRRLQ------LLV 392
           D G+        +Q M CN  K++  L+E V+ L++E+    EL    +L+       ++
Sbjct: 46  DAGEANKVLEEKLQEMNCNSDKNVAELKERVQVLEKELDNANELLSSSKLRGPAGSSSVL 105

Query: 393 TDLQLNGLPYTLLLKNKILMFCRGMKLLAIEWEKKAFKESNQIVECIEKLSRAEILCSSL 572
           T+ QL  L  T L  +KI     GMKL  +     AF ES + ++ +E+L     +  S+
Sbjct: 106 TEEQLTNLSPTALTVSKIK---PGMKLTEL---YSAFVESQEQLQ-LERLENKRRMQKSV 158

Query: 573 DIQDIENKSCVEEGTHLASE 632
               ++ +  V+E   L +E
Sbjct: 159 AALSVQLEQAVKEVHRLQNE 178