DK959698
Clone id TST39A01NGRL0005_G12
Library
Length 477
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_G12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
CTGCTCCGCCGCGTCTCCGCCCCCCTAGCCAGCGCCTGGCGCTCGCTCTTGCACCGTTTC
TCTCGCAACAGCAGAGGTGCAAGAAGCTTTGCAAAGCTTTACCACGATGTGCAGACTTGC
GCATACGAGGATGTGCAAGTGATGTGGTCCATCATTCACCAGCAGGTGAAGCCCCTTGAG
GCGTCGTCTGGCAAGGCCGCCCAAATGCACGGACATGGGGGGGTGAATGGAGGAGCACAG
GCACAGCACATGTAATCTAGATACACACAAAGAGGTGCCCACACACACACACATATACAT
ATAGAACACGATGATGATGATGCATACAAGAAAGCTTTCACAGTACTTGGCTGGATTCTG
AGTAGTGGATTTTTGCATGTCGAAGCCTACCGATCCGTCCTTGATGTACAAAATACATTC
GAAATAATTTTATTTGGTTTTGGTTTGTACAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q69566
Definition sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesvirus 6A (strain Uganda-1102)
Align length 36
Score (bit) 31.2
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959698|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_G12, 5'
(450 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesv... 31 2.2
sp|Q91288|FGFR4_PLEWA Fibroblast growth factor receptor 4 OS=Ple... 29 8.0
sp|P15974|PHXR4_MOUSE Putative per-hexamer repeat protein 4 OS=M... 29 8.2

>sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human
herpesvirus 6A (strain Uganda-1102) GN=U88 PE=4 SV=1
Length = 413

Score = 31.2 bits (69), Expect = 2.2
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1

Query: 342 CESFLVCIIIIVFYMYMCVCVGTSLCVSRLHVLCLC 235
C S +C+ + + M MC+C+ SLC+S +C+C
Sbjct: 301 CMSLCMCMCMCMC-MCMCMCMCMSLCMSLCMCMCMC 335



Score = 30.0 bits (66), Expect = 4.8
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -1

Query: 342 CESFLVCIIIIVFYMYMCVCVGTSLCVSRLHVLCLCSSI 226
C VC+ + V + M +C+ +C+ +C+C S+
Sbjct: 286 CVCLCVCVCVCVCLLCMSLCMCMCMCMCMCMCMCMCMSL 324



Score = 29.6 bits (65), Expect = 6.3
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = -1

Query: 342 CESFLVCIIIIVFYMYMCVCVGTSLCVSRLHVLCLCSSI 226
C VC+ ++ + MC+C+ +C+ + LC S+
Sbjct: 290 CVCVCVCVCLLCMSLCMCMCMCMCMCMCMCMCMSLCMSL 328



Score = 29.3 bits (64), Expect = 8.2
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1

Query: 342 CESFLVCIIIIVFYMYMCVCVGTSLCVSRLHVLCLC 235
C VC+ + V + +CVCV LCV +CLC
Sbjct: 234 CVCVCVCVCVCVC-VCVCVCVCVCLCVCVCLCVCLC 268


>sp|Q91288|FGFR4_PLEWA Fibroblast growth factor receptor 4
OS=Pleurodeles waltlii GN=FGFR4 PE=2 SV=1
Length = 822

Score = 29.3 bits (64), Expect = 8.0
Identities = 24/64 (37%), Positives = 29/64 (45%)
Frame = +3

Query: 51 APFLSQQQRCKKLCKALPRCADLRIRGCASDVVHHSPAGEAP*GVVWQGRPNARTWGGEW 230
APF SQ QR K A+P ++ R C S AG G+ W N R +GGE
Sbjct: 165 APFWSQPQRMDKKLYAVPAGNTVKFR-CPS-------AGNPTPGIRW--LKNGREFGGEH 214

Query: 231 RSTG 242
R G
Sbjct: 215 RIGG 218


>sp|P15974|PHXR4_MOUSE Putative per-hexamer repeat protein 4 OS=Mus
musculus GN=Phxr4 PE=2 SV=1
Length = 95

Score = 29.3 bits (64), Expect = 8.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1

Query: 342 CESFLVCIIIIVFYMYMCVCVGTSLCVSRLHVLCL 238
C F VC+ + V +Y+ VC + + LH+ CL
Sbjct: 12 CVCFSVCMCVHVLCVYVHVCTYAHIWTTALHLRCL 46


tr_hit_id A9PJ91
Definition tr|A9PJ91|A9PJ91_POPJC Putative uncharacterized protein OS=Populus jackii
Align length 68
Score (bit) 52.8
E-value 9.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959698|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0005_G12, 5'
(450 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9PJ91|A9PJ91_POPJC Putative uncharacterized protein OS=Popul... 53 9e-06
tr|B8B0Z6|B8B0Z6_ORYSI Putative uncharacterized protein OS=Oryza... 52 1e-05
tr|A9NMR3|A9NMR3_PICSI Putative uncharacterized protein OS=Picea... 51 3e-05
tr|B6U0Y1|B6U0Y1_MAIZE Putative uncharacterized protein OS=Zea m... 50 6e-05
tr|Q8S3Q1|Q8S3Q1_ORYSJ Putative uncharacterized protein 24K23.5 ... 49 2e-04
tr|B8AVM4|B8AVM4_ORYSI Putative uncharacterized protein OS=Oryza... 49 2e-04
tr|Q01HZ6|Q01HZ6_ORYSA OSIGBa0132E09-OSIGBa0108L24.3 protein OS=... 47 5e-04
tr|B6UHT5|B6UHT5_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.001
tr|B6SMT4|B6SMT4_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.001
tr|A7Q5X3|A7Q5X3_VITVI Chromosome chr14 scaffold_54, whole genom... 44 0.005
tr|A7NWM4|A7NWM4_VITVI Chromosome chr5 scaffold_2, whole genome ... 44 0.005
tr|B6U9Z6|B6U9Z6_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.007
tr|Q6Z3M3|Q6Z3M3_ORYSJ Os08g0241300 protein OS=Oryza sativa subs... 43 0.007
tr|A2YSS6|A2YSS6_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.007
tr|Q7XSR6|Q7XSR6_ORYSJ Os04g0603400 protein OS=Oryza sativa subs... 43 0.009
tr|Q01KK8|Q01KK8_ORYSA OSIGBa0118P15.3 protein OS=Oryza sativa G... 43 0.009
tr|B6U2M1|B6U2M1_MAIZE Putative uncharacterized protein OS=Zea m... 43 0.009
tr|B6U3D4|B6U3D4_MAIZE Putative uncharacterized protein OS=Zea m... 42 0.020
tr|A2YSS3|A2YSS3_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.020
tr|B6T0Z5|B6T0Z5_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.026
tr|B6SR50|B6SR50_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.026
tr|A9NPL6|A9NPL6_PICSI Putative uncharacterized protein OS=Picea... 41 0.026
tr|Q8H071|Q8H071_ORYSJ Os03g0206400 protein OS=Oryza sativa subs... 41 0.034
tr|B6SLE8|B6SLE8_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.034
tr|A3AX50|A3AX50_ORYSJ Putative uncharacterized protein OS=Oryza... 41 0.034
tr|A2XDQ7|A2XDQ7_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.034
tr|B6U9K0|B6U9K0_MAIZE Putative uncharacterized protein OS=Zea m... 40 0.045
tr|A9RJX1|A9RJX1_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.045
tr|Q6ZL32|Q6ZL32_ORYSJ Os07g0572400 protein OS=Oryza sativa subs... 40 0.076
tr|Q6AT96|Q6AT96_ORYSJ Os05g0138000 protein OS=Oryza sativa subs... 40 0.076

>tr|A9PJ91|A9PJ91_POPJC Putative uncharacterized protein OS=Populus
jackii PE=4 SV=1
Length = 92

Score = 52.8 bits (125), Expect = 9e-06
Identities = 28/68 (41%), Positives = 37/68 (54%)
Frame = +1

Query: 1 LLRRVSAPLASAWRSLLHRFSRNSRGARSFAKLYHDVQTCAYEDVQVMWSIIHQQVKPLE 180
L ++ P+ W S+ R GA + KL++DVQTC YEDVQVMW I+ + L
Sbjct: 3 LWHKMIFPVRRVWLSVSARVKARKNGA-NLLKLHNDVQTCGYEDVQVMWEILRRSESELM 61

Query: 181 ASSGKAAQ 204
AS K Q
Sbjct: 62 ASHPKRKQ 69


>tr|B8B0Z6|B8B0Z6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_23978 PE=4 SV=1
Length = 108

Score = 52.4 bits (124), Expect = 1e-05
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1

Query: 10 RVSAPLASAWRSLLHRFSRNSRGARSFAKLYHDVQTCAYEDVQVMWSII--HQQVKPLEA 183
RV AP+ AW ++ +R G R L+ DVQTC YEDVQVMW+++ ++ PL
Sbjct: 7 RVVAPVRRAWLAVAAARARARNGERGILDLHQDVQTCGYEDVQVMWNMLSSEKEAAPLPP 66

Query: 184 SSGKAA 201
K A
Sbjct: 67 PRRKRA 72


>tr|A9NMR3|A9NMR3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 78

Score = 51.2 bits (121), Expect = 3e-05
Identities = 23/51 (45%), Positives = 31/51 (60%)
Frame = +1

Query: 4 LRRVSAPLASAWRSLLHRFSRNSRGARSFAKLYHDVQTCAYEDVQVMWSII 156
LR+ P+ W S+ R RG R KLY+DVQ+C Y+DVQVMW ++
Sbjct: 4 LRKFMFPMRRVWISIAARMRTRKRG-RGLLKLYNDVQSCGYQDVQVMWEMV 53


>tr|B6U0Y1|B6U0Y1_MAIZE Putative uncharacterized protein OS=Zea mays
PE=4 SV=1
Length = 100

Score = 50.1 bits (118), Expect = 6e-05
Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +1

Query: 7 RRVSAPLASAWRSLLHRF-SRNSRGARSFAKLYHDVQTCAYEDVQVMWSIIHQQVKPLEA 183
++V +P AW ++ R +RN+ + S KL+ DVQ C Y DVQVM+ I+ + LEA
Sbjct: 6 KKVVSPARRAWAAVSTRVRARNAGSSGSILKLHEDVQXCGYRDVQVMFDILTSE---LEA 62

Query: 184 SSGKAAQMHGH 216
S+ + A H H
Sbjct: 63 STQRPAVKHQH 73


>tr|Q8S3Q1|Q8S3Q1_ORYSJ Putative uncharacterized protein 24K23.5
(OSJNBa0011F23.6 protein) OS=Oryza sativa subsp.
japonica GN=24K23.5 PE=4 SV=1
Length = 92

Score = 48.5 bits (114), Expect = 2e-04
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1

Query: 7 RRVSAPLASAWRSLLHRFSRNSR--GARSFAKLYHDVQTCAYEDVQVMWSIIHQ 162
R V P+ AW + R R + G KL+ D+QTCAYEDVQVMW I+ +
Sbjct: 6 RAVVVPVKRAWVVVAARLRRKKQYDGRGVLVKLHDDIQTCAYEDVQVMWEILQR 59


>tr|B8AVM4|B8AVM4_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_17749 PE=4 SV=1
Length = 92

Score = 48.5 bits (114), Expect = 2e-04
Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +1

Query: 7 RRVSAPLASAWRSLLHRFSRNSR--GARSFAKLYHDVQTCAYEDVQVMWSIIHQ 162
R V P+ AW + R R + G KL+ D+QTCAYEDVQVMW I+ +
Sbjct: 6 RAVVVPVKRAWVVVAARLRRKKQYDGRGVLVKLHDDIQTCAYEDVQVMWEILQR 59


>tr|Q01HZ6|Q01HZ6_ORYSA OSIGBa0132E09-OSIGBa0108L24.3 protein
OS=Oryza sativa GN=OSIGBa0132E09-OSIGBa0108L24.3 PE=4
SV=1
Length = 92

Score = 47.0 bits (110), Expect = 5e-04
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +1

Query: 7 RRVSAPLASAWRSLLHRFSRNSR--GARSFAKLYHDVQTCAYEDVQVMWSIIHQ 162
R V P+ AW + R R + G KL+ D+QTC YEDVQVMW I+ +
Sbjct: 6 RAVVVPVKRAWVVVAARLRRKKQYDGRGVLVKLHDDIQTCGYEDVQVMWEILQR 59


>tr|B6UHT5|B6UHT5_MAIZE Putative uncharacterized protein OS=Zea mays
PE=4 SV=1
Length = 94

Score = 45.4 bits (106), Expect = 0.001
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +1

Query: 7 RRVSAPLASAWRS----LLHRFSRNSRGARSFAKLYHDVQTCAYEDVQVMWSIIHQ 162
+ V P+ AW + L R + G KL+ DVQTCAYEDVQVMW ++ +
Sbjct: 6 KAVVVPVKRAWIAAAARLTTRHKKEDGGHGVLVKLHDDVQTCAYEDVQVMWEMLQR 61


>tr|B6SMT4|B6SMT4_MAIZE Putative uncharacterized protein OS=Zea mays
PE=4 SV=1
Length = 94

Score = 45.4 bits (106), Expect = 0.001
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Frame = +1

Query: 7 RRVSAPLASAWRS----LLHRFSRNSRGARSFAKLYHDVQTCAYEDVQVMWSIIHQ 162
+ V P+ AW + L R + G KL+ DVQTCAYEDVQVMW ++ +
Sbjct: 6 KAVVVPVKRAWIAAAARLTTRHKKEDGGHGVLVKLHDDVQTCAYEDVQVMWEMLQR 61


>tr|A7Q5X3|A7Q5X3_VITVI Chromosome chr14 scaffold_54, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00031132001
PE=4 SV=1
Length = 62

Score = 43.5 bits (101), Expect = 0.005
Identities = 23/57 (40%), Positives = 33/57 (57%)
Frame = +1

Query: 4 LRRVSAPLASAWRSLLHRFSRNSRGARSFAKLYHDVQTCAYEDVQVMWSIIHQQVKP 174
L+ + +PL W L H + SRG LY DV++C YEDVQ++WSI+ + P
Sbjct: 4 LQSLFSPLRKLWFRL-HSTQKKSRGIYI---LYEDVKSCQYEDVQILWSILVESNAP 56