DK959698 |
Clone id |
TST39A01NGRL0005_G12 |
Library |
TST39 |
Length |
477 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_G12. 5' end sequence. |
Accession |
DK959698 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CTGCTCCGCCGCGTCTCCGCCCCCCTAGCCAGCGCCTGGCGCTCGCTCTTGCACCGTTTC TCTCGCAACAGCAGAGGTGCAAGAAGCTTTGCAAAGCTTTACCACGATGTGCAGACTTGC GCATACGAGGATGTGCAAGTGATGTGGTCCATCATTCACCAGCAGGTGAAGCCCCTTGAG GCGTCGTCTGGCAAGGCCGCCCAAATGCACGGACATGGGGGGGTGAATGGAGGAGCACAG GCACAGCACATGTAATCTAGATACACACAAAGAGGTGCCCACACACACACACATATACAT ATAGAACACGATGATGATGATGCATACAAGAAAGCTTTCACAGTACTTGGCTGGATTCTG AGTAGTGGATTTTTGCATGTCGAAGCCTACCGATCCGTCCTTGATGTACAAAATACATTC GAAATAATTTTATTTGGTTTTGGTTTGTACAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q69566 |
Definition |
sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesvirus 6A (strain Uganda-1102) |
Align length |
36 |
Score (bit) |
31.2 |
E-value |
2.2 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PJ91 |
Definition |
tr|A9PJ91|A9PJ91_POPJC Putative uncharacterized protein OS=Populus jackii |
Align length |
68 |
Score (bit) |
52.8 |
E-value |
9.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959698|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0005_G12, 5' (450 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9PJ91|A9PJ91_POPJC Putative uncharacterized protein OS=Popul... 53 9e-06 tr|B8B0Z6|B8B0Z6_ORYSI Putative uncharacterized protein OS=Oryza... 52 1e-05 tr|A9NMR3|A9NMR3_PICSI Putative uncharacterized protein OS=Picea... 51 3e-05 tr|B6U0Y1|B6U0Y1_MAIZE Putative uncharacterized protein OS=Zea m... 50 6e-05 tr|Q8S3Q1|Q8S3Q1_ORYSJ Putative uncharacterized protein 24K23.5 ... 49 2e-04 tr|B8AVM4|B8AVM4_ORYSI Putative uncharacterized protein OS=Oryza... 49 2e-04 tr|Q01HZ6|Q01HZ6_ORYSA OSIGBa0132E09-OSIGBa0108L24.3 protein OS=... 47 5e-04 tr|B6UHT5|B6UHT5_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.001 tr|B6SMT4|B6SMT4_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.001 tr|A7Q5X3|A7Q5X3_VITVI Chromosome chr14 scaffold_54, whole genom... 44 0.005 tr|A7NWM4|A7NWM4_VITVI Chromosome chr5 scaffold_2, whole genome ... 44 0.005 tr|B6U9Z6|B6U9Z6_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.007 tr|Q6Z3M3|Q6Z3M3_ORYSJ Os08g0241300 protein OS=Oryza sativa subs... 43 0.007 tr|A2YSS6|A2YSS6_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.007 tr|Q7XSR6|Q7XSR6_ORYSJ Os04g0603400 protein OS=Oryza sativa subs... 43 0.009 tr|Q01KK8|Q01KK8_ORYSA OSIGBa0118P15.3 protein OS=Oryza sativa G... 43 0.009 tr|B6U2M1|B6U2M1_MAIZE Putative uncharacterized protein OS=Zea m... 43 0.009 tr|B6U3D4|B6U3D4_MAIZE Putative uncharacterized protein OS=Zea m... 42 0.020 tr|A2YSS3|A2YSS3_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.020 tr|B6T0Z5|B6T0Z5_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.026 tr|B6SR50|B6SR50_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.026 tr|A9NPL6|A9NPL6_PICSI Putative uncharacterized protein OS=Picea... 41 0.026 tr|Q8H071|Q8H071_ORYSJ Os03g0206400 protein OS=Oryza sativa subs... 41 0.034 tr|B6SLE8|B6SLE8_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.034 tr|A3AX50|A3AX50_ORYSJ Putative uncharacterized protein OS=Oryza... 41 0.034 tr|A2XDQ7|A2XDQ7_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.034 tr|B6U9K0|B6U9K0_MAIZE Putative uncharacterized protein OS=Zea m... 40 0.045 tr|A9RJX1|A9RJX1_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.045 tr|Q6ZL32|Q6ZL32_ORYSJ Os07g0572400 protein OS=Oryza sativa subs... 40 0.076 tr|Q6AT96|Q6AT96_ORYSJ Os05g0138000 protein OS=Oryza sativa subs... 40 0.076
>tr|A9PJ91|A9PJ91_POPJC Putative uncharacterized protein OS=Populus jackii PE=4 SV=1 Length = 92
Score = 52.8 bits (125), Expect = 9e-06 Identities = 28/68 (41%), Positives = 37/68 (54%) Frame = +1
Query: 1 LLRRVSAPLASAWRSLLHRFSRNSRGARSFAKLYHDVQTCAYEDVQVMWSIIHQQVKPLE 180 L ++ P+ W S+ R GA + KL++DVQTC YEDVQVMW I+ + L Sbjct: 3 LWHKMIFPVRRVWLSVSARVKARKNGA-NLLKLHNDVQTCGYEDVQVMWEILRRSESELM 61
Query: 181 ASSGKAAQ 204 AS K Q Sbjct: 62 ASHPKRKQ 69
>tr|B8B0Z6|B8B0Z6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_23978 PE=4 SV=1 Length = 108
Score = 52.4 bits (124), Expect = 1e-05 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%) Frame = +1
Query: 10 RVSAPLASAWRSLLHRFSRNSRGARSFAKLYHDVQTCAYEDVQVMWSII--HQQVKPLEA 183 RV AP+ AW ++ +R G R L+ DVQTC YEDVQVMW+++ ++ PL Sbjct: 7 RVVAPVRRAWLAVAAARARARNGERGILDLHQDVQTCGYEDVQVMWNMLSSEKEAAPLPP 66
Query: 184 SSGKAA 201 K A Sbjct: 67 PRRKRA 72
>tr|A9NMR3|A9NMR3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 78
Score = 51.2 bits (121), Expect = 3e-05 Identities = 23/51 (45%), Positives = 31/51 (60%) Frame = +1
Query: 4 LRRVSAPLASAWRSLLHRFSRNSRGARSFAKLYHDVQTCAYEDVQVMWSII 156 LR+ P+ W S+ R RG R KLY+DVQ+C Y+DVQVMW ++ Sbjct: 4 LRKFMFPMRRVWISIAARMRTRKRG-RGLLKLYNDVQSCGYQDVQVMWEMV 53
>tr|B6U0Y1|B6U0Y1_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 100
Score = 50.1 bits (118), Expect = 6e-05 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 1/71 (1%) Frame = +1
Query: 7 RRVSAPLASAWRSLLHRF-SRNSRGARSFAKLYHDVQTCAYEDVQVMWSIIHQQVKPLEA 183 ++V +P AW ++ R +RN+ + S KL+ DVQ C Y DVQVM+ I+ + LEA Sbjct: 6 KKVVSPARRAWAAVSTRVRARNAGSSGSILKLHEDVQXCGYRDVQVMFDILTSE---LEA 62
Query: 184 SSGKAAQMHGH 216 S+ + A H H Sbjct: 63 STQRPAVKHQH 73
>tr|Q8S3Q1|Q8S3Q1_ORYSJ Putative uncharacterized protein 24K23.5 (OSJNBa0011F23.6 protein) OS=Oryza sativa subsp. japonica GN=24K23.5 PE=4 SV=1 Length = 92
Score = 48.5 bits (114), Expect = 2e-04 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Frame = +1
Query: 7 RRVSAPLASAWRSLLHRFSRNSR--GARSFAKLYHDVQTCAYEDVQVMWSIIHQ 162 R V P+ AW + R R + G KL+ D+QTCAYEDVQVMW I+ + Sbjct: 6 RAVVVPVKRAWVVVAARLRRKKQYDGRGVLVKLHDDIQTCAYEDVQVMWEILQR 59
>tr|B8AVM4|B8AVM4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_17749 PE=4 SV=1 Length = 92
Score = 48.5 bits (114), Expect = 2e-04 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 2/54 (3%) Frame = +1
Query: 7 RRVSAPLASAWRSLLHRFSRNSR--GARSFAKLYHDVQTCAYEDVQVMWSIIHQ 162 R V P+ AW + R R + G KL+ D+QTCAYEDVQVMW I+ + Sbjct: 6 RAVVVPVKRAWVVVAARLRRKKQYDGRGVLVKLHDDIQTCAYEDVQVMWEILQR 59
>tr|Q01HZ6|Q01HZ6_ORYSA OSIGBa0132E09-OSIGBa0108L24.3 protein OS=Oryza sativa GN=OSIGBa0132E09-OSIGBa0108L24.3 PE=4 SV=1 Length = 92
Score = 47.0 bits (110), Expect = 5e-04 Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 2/54 (3%) Frame = +1
Query: 7 RRVSAPLASAWRSLLHRFSRNSR--GARSFAKLYHDVQTCAYEDVQVMWSIIHQ 162 R V P+ AW + R R + G KL+ D+QTC YEDVQVMW I+ + Sbjct: 6 RAVVVPVKRAWVVVAARLRRKKQYDGRGVLVKLHDDIQTCGYEDVQVMWEILQR 59
>tr|B6UHT5|B6UHT5_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 94
Score = 45.4 bits (106), Expect = 0.001 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = +1
Query: 7 RRVSAPLASAWRS----LLHRFSRNSRGARSFAKLYHDVQTCAYEDVQVMWSIIHQ 162 + V P+ AW + L R + G KL+ DVQTCAYEDVQVMW ++ + Sbjct: 6 KAVVVPVKRAWIAAAARLTTRHKKEDGGHGVLVKLHDDVQTCAYEDVQVMWEMLQR 61
>tr|B6SMT4|B6SMT4_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 94
Score = 45.4 bits (106), Expect = 0.001 Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 4/56 (7%) Frame = +1
Query: 7 RRVSAPLASAWRS----LLHRFSRNSRGARSFAKLYHDVQTCAYEDVQVMWSIIHQ 162 + V P+ AW + L R + G KL+ DVQTCAYEDVQVMW ++ + Sbjct: 6 KAVVVPVKRAWIAAAARLTTRHKKEDGGHGVLVKLHDDVQTCAYEDVQVMWEMLQR 61
>tr|A7Q5X3|A7Q5X3_VITVI Chromosome chr14 scaffold_54, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00031132001 PE=4 SV=1 Length = 62
Score = 43.5 bits (101), Expect = 0.005 Identities = 23/57 (40%), Positives = 33/57 (57%) Frame = +1
Query: 4 LRRVSAPLASAWRSLLHRFSRNSRGARSFAKLYHDVQTCAYEDVQVMWSIIHQQVKP 174 L+ + +PL W L H + SRG LY DV++C YEDVQ++WSI+ + P Sbjct: 4 LQSLFSPLRKLWFRL-HSTQKKSRGIYI---LYEDVKSCQYEDVQILWSILVESNAP 56
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