DK959573 |
Clone id |
TST39A01NGRL0005_B02 |
Library |
TST39 |
Length |
733 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0005_B02. 5' end sequence. |
Accession |
DK959573 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CACACACACACACGATCAGGTCATGAGCAGCGAAGAAGGAGCAGCCAACTGGAGGGATGC GCAATCCATCTGCTTCAGCATTCCCTTGATACCTGCGGCCCTGCAGCAGCTGCGCTTCCT GTCGCAGGTCGATCTCCACCGCTGCCTCTATCGAGGCCCTGCAGTCTCACGCGCCATCCA ACGGTATGAGGAGTGTTGGCTCCCCTTGCTGGCAGCAAGCCAAGGTTCGACTGGTGATGA GGGCTTGCCTCTCCAGCCTCCTCTGGATTGCGCTTGGATCTGGCATTGCCACCGCCTTAG CCCGGCTCTATCATCTTTGAGGATATGTGTGCTTCAACATCACGAAAAAGGTTGCCTTAC CAGTATTGGTGGAAAGCTTCACCAAAGAGAGGGGCGCCAAGCTCACTTGGGGGAAATTGG ATAAAAGAGAACAGTACAAGTACCATGTTTAGAGGAAAAATTGAATTGAAGAGTCAAGCA AAGATTGCATATCAAGTGGTTGTGCCACTCGGGTTACTTTTTCAAGAGATGTTAGAAGAA ACAAATCCATTTGGAAAATGGAGTTTACCAAAGGTTTCTACTTCTCAAGTGTACAAACAT AACAAAGTATTTGCCCTCTCTTCTAATACACTGTATCATGAAACCCATGGAAAGTTAACA ATTAGGGATAGTGATCCCAATAATCACATTAATCCACTTCTTTTAAGAAAAAAAAAAAAA AAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9N1X4 |
Definition |
sp|Q9N1X4|SFTPD_PIG Pulmonary surfactant-associated protein D OS=Sus scrofa |
Align length |
66 |
Score (bit) |
33.5 |
E-value |
1.1 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RTE2 |
Definition |
tr|A9RTE2|A9RTE2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
85 |
Score (bit) |
105.0 |
E-value |
4.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959573|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0005_B02, 5' (704 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RTE2|A9RTE2_PHYPA Predicted protein OS=Physcomitrella paten... 105 4e-21 tr|B8LME0|B8LME0_PICSI Putative uncharacterized protein OS=Picea... 104 6e-21 tr|Q9SZJ2|Q9SZJ2_ARATH Putative uncharacterized protein F20D10.2... 102 2e-20 tr|A9YWR4|A9YWR4_MEDTR Glycine-rich protein OS=Medicago truncatu... 102 2e-20 tr|A7R8I8|A7R8I8_VITVI Chromosome undetermined scaffold_2601, wh... 101 4e-20 tr|A7R437|A7R437_VITVI Chromosome undetermined scaffold_611, who... 101 4e-20 tr|A7R203|A7R203_VITVI Chromosome undetermined scaffold_388, who... 101 4e-20 tr|B8BLM2|B8BLM2_ORYSI Putative uncharacterized protein OS=Oryza... 100 9e-20 tr|A2ZGG0|A2ZGG0_ORYSI Putative uncharacterized protein OS=Oryza... 100 9e-20 tr|Q9ZQ47|Q9ZQ47_ARATH Putative uncharacterized protein At2g2266... 99 2e-19 tr|Q2V469|Q2V469_ARATH Uncharacterized protein At2g22660.1 OS=Ar... 99 2e-19 tr|Q9XEU3|Q9XEU3_ORYSA Putative uncharacterized protein OS=Oryza... 99 3e-19 tr|Q7XZU9|Q7XZU9_HORVU PG1 OS=Hordeum vulgare GN=pg1 PE=4 SV=1 99 3e-19 tr|Q5EXM2|Q5EXM2_HORVU Pg1 OS=Hordeum vulgare GN=pg1 PE=4 SV=1 99 3e-19 tr|Q2R124|Q2R124_ORYSJ Os11g0621300 protein OS=Oryza sativa subs... 99 3e-19 tr|Q9XEP3|Q9XEP3_SORBI Putative uncharacterized protein OS=Sorgh... 92 4e-17 tr|A9T666|A9T666_PHYPA Predicted protein OS=Physcomitrella paten... 84 9e-15 tr|A9SU36|A9SU36_PHYPA Predicted protein OS=Physcomitrella paten... 79 3e-13 tr|A9T0F4|A9T0F4_PHYPA Predicted protein OS=Physcomitrella paten... 75 3e-12 tr|A9TTG1|A9TTG1_PHYPA Predicted protein OS=Physcomitrella paten... 74 7e-12 tr|A9S5Y2|A9S5Y2_PHYPA Predicted protein OS=Physcomitrella paten... 68 5e-10 tr|B6PB78|B6PB78_BRAFL Putative uncharacterized protein OS=Branc... 65 6e-09 tr|A8QC01|A8QC01_BRUMA Putative uncharacterized protein OS=Brugi... 62 3e-08 tr|A9U387|A9U387_PHYPA Predicted protein OS=Physcomitrella paten... 62 4e-08 tr|A7RQB8|A7RQB8_NEMVE Predicted protein OS=Nematostella vectens... 60 2e-07 tr|A7PRZ1|A7PRZ1_VITVI Chromosome chr14 scaffold_27, whole genom... 59 2e-07 tr|O01849|O01849_CAEEL Putative uncharacterized protein OS=Caeno... 59 3e-07 tr|A8WW82|A8WW82_CAEBR Putative uncharacterized protein OS=Caeno... 59 3e-07 tr|A5BIA5|A5BIA5_VITVI Putative uncharacterized protein OS=Vitis... 57 9e-07 tr|Q9C7J8|Q9C7J8_ARATH Putative uncharacterized protein F14G9.16... 55 6e-06
>tr|A9RTE2|A9RTE2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_160875 PE=4 SV=1 Length = 771
Score = 105 bits (261), Expect = 4e-21 Identities = 46/85 (54%), Positives = 56/85 (65%) Frame = +2
Query: 50 WRDAQSICFSIPLIPAALQQLRFLSQVDLHRCLYRGPAVSRAIQRYEECWLPLLAASQGS 229 W AQ++ S+ L+ AA ++LR L +VD +C Y GPAV RAI RYE CWLPLLA Sbjct: 9 WEAAQALPISVDLVAAATEELRMLEEVDRFQCYYEGPAVVRAIDRYERCWLPLLAKEGDD 68
Query: 230 TGDEGLPLQPPLDCAWIWHCHRLSP 304 + PL PPLDC WIWH HRL+P Sbjct: 69 SQGASPPLVPPLDCGWIWHVHRLNP 93
>tr|B8LME0|B8LME0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 815
Score = 104 bits (259), Expect = 6e-21 Identities = 51/87 (58%), Positives = 59/87 (67%), Gaps = 2/87 (2%) Frame = +2
Query: 50 WRDAQSICFSIPL--IPAALQQLRFLSQVDLHRCLYRGPAVSRAIQRYEECWLPLLAASQ 223 WR AQ I S+ L I AA Q L FL+ VD +RCLY GPA+ RAI RYE+CWLPLL A Sbjct: 9 WRKAQEISISVDLDLISAAKQHLLFLASVDRYRCLYDGPALQRAIYRYEQCWLPLL-AEH 67
Query: 224 GSTGDEGLPLQPPLDCAWIWHCHRLSP 304 +G+ L PLDC WIWHCHRL+P Sbjct: 68 TESGNAKFQLVVPLDCEWIWHCHRLNP 94
>tr|Q9SZJ2|Q9SZJ2_ARATH Putative uncharacterized protein F20D10.20 (Putative uncharacterized protein AT4g37900) OS=Arabidopsis thaliana GN=AT4g37900 PE=2 SV=1 Length = 787
Score = 102 bits (254), Expect = 2e-20 Identities = 48/91 (52%), Positives = 58/91 (63%) Frame = +2
Query: 32 EEGAANWRDAQSICFSIPLIPAALQQLRFLSQVDLHRCLYRGPAVSRAIQRYEECWLPLL 211 +E W +AQ I S+ L+ AA + L FL VD +RCLY GPA+ RAI RY WLPLL Sbjct: 5 KEQTLEWNEAQKIDISVDLLAAAKKHLLFLGAVDRNRCLYDGPALQRAIYRYNAYWLPLL 64
Query: 212 AASQGSTGDEGLPLQPPLDCAWIWHCHRLSP 304 A S+ PL PPLDC W+WHCHRL+P Sbjct: 65 AQYTESSSICQGPLVPPLDCEWVWHCHRLNP 95
>tr|A9YWR4|A9YWR4_MEDTR Glycine-rich protein OS=Medicago truncatula PE=4 SV=1 Length = 897
Score = 102 bits (254), Expect = 2e-20 Identities = 52/94 (55%), Positives = 63/94 (67%) Frame = +2
Query: 23 MSSEEGAANWRDAQSICFSIPLIPAALQQLRFLSQVDLHRCLYRGPAVSRAIQRYEECWL 202 M +E+ A W +AQ I S+ L+ A +QL+FL+ VD +R LY GPA+ RAI RY CWL Sbjct: 1 MEAEQEHA-WNEAQKIGMSVDLVDVAKKQLQFLAAVDRNRHLYDGPALDRAIYRYNACWL 59
Query: 203 PLLAASQGSTGDEGLPLQPPLDCAWIWHCHRLSP 304 PLLA S EG PL PLDC WIWHCHRL+P Sbjct: 60 PLLAKHSESRIFEG-PLVVPLDCEWIWHCHRLNP 92
>tr|A7R8I8|A7R8I8_VITVI Chromosome undetermined scaffold_2601, whole genome shotgun sequence (Fragment) OS=Vitis vinifera GN=GSVIVT00011948001 PE=4 SV=1 Length = 515
Score = 101 bits (252), Expect = 4e-20 Identities = 48/91 (52%), Positives = 58/91 (63%) Frame = +2
Query: 32 EEGAANWRDAQSICFSIPLIPAALQQLRFLSQVDLHRCLYRGPAVSRAIQRYEECWLPLL 211 +E W +AQ I S L+ A QL+FL+ VD HRCLY GP + +AI RY CWLPLL Sbjct: 3 KEQELEWLEAQKIVISEDLVAVAKMQLQFLAVVDKHRCLYDGPTLQKAIYRYNACWLPLL 62
Query: 212 AASQGSTGDEGLPLQPPLDCAWIWHCHRLSP 304 A S +G PL P+DC WIWHCHRL+P Sbjct: 63 AKHSESQIFKG-PLVVPVDCEWIWHCHRLNP 92
>tr|A7R437|A7R437_VITVI Chromosome undetermined scaffold_611, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00004142001 PE=4 SV=1 Length = 1690
Score = 101 bits (252), Expect = 4e-20 Identities = 48/91 (52%), Positives = 58/91 (63%) Frame = +2
Query: 32 EEGAANWRDAQSICFSIPLIPAALQQLRFLSQVDLHRCLYRGPAVSRAIQRYEECWLPLL 211 +E W +AQ I S L+ A QL+FL+ VD HRCLY GP + +AI RY CWLPLL Sbjct: 3 KEQQLEWLEAQKIVISEDLVAVAKMQLQFLAVVDKHRCLYDGPTLQKAIYRYNACWLPLL 62
Query: 212 AASQGSTGDEGLPLQPPLDCAWIWHCHRLSP 304 A S +G PL P+DC WIWHCHRL+P Sbjct: 63 AKHSESQIFKG-PLVVPVDCEWIWHCHRLNP 92
>tr|A7R203|A7R203_VITVI Chromosome undetermined scaffold_388, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00012516001 PE=4 SV=1 Length = 825
Score = 101 bits (252), Expect = 4e-20 Identities = 48/91 (52%), Positives = 58/91 (63%) Frame = +2
Query: 32 EEGAANWRDAQSICFSIPLIPAALQQLRFLSQVDLHRCLYRGPAVSRAIQRYEECWLPLL 211 +E W +AQ I S L+ A QL+FL+ VD HRCLY GP + +AI RY CWLPLL Sbjct: 3 KEQQLEWLEAQKIVISEDLVAVAKMQLQFLAVVDKHRCLYDGPTLQKAIYRYNACWLPLL 62
Query: 212 AASQGSTGDEGLPLQPPLDCAWIWHCHRLSP 304 A S +G PL P+DC WIWHCHRL+P Sbjct: 63 AKHSESQIFKG-PLVVPVDCEWIWHCHRLNP 92
>tr|B8BLM2|B8BLM2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_36873 PE=4 SV=1 Length = 805
Score = 100 bits (249), Expect = 9e-20 Identities = 48/90 (53%), Positives = 57/90 (63%) Frame = +2
Query: 35 EGAANWRDAQSICFSIPLIPAALQQLRFLSQVDLHRCLYRGPAVSRAIQRYEECWLPLLA 214 E A W AQ + L+ AAL+QL FL+ VD R LY GP + RAI RY+ CWLPLLA Sbjct: 4 EQEARWLAAQGVAVGADLVAAALRQLEFLAAVDRRRWLYEGPLLERAIHRYKTCWLPLLA 63
Query: 215 ASQGSTGDEGLPLQPPLDCAWIWHCHRLSP 304 + +G PL PLDC WIWHCHRL+P Sbjct: 64 KHTQAAVVDG-PLVVPLDCEWIWHCHRLNP 92
>tr|A2ZGG0|A2ZGG0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_36870 PE=4 SV=1 Length = 902
Score = 100 bits (249), Expect = 9e-20 Identities = 48/90 (53%), Positives = 57/90 (63%) Frame = +2
Query: 35 EGAANWRDAQSICFSIPLIPAALQQLRFLSQVDLHRCLYRGPAVSRAIQRYEECWLPLLA 214 E A W AQ + L+ AAL+QL FL+ VD R LY GP + RAI RY+ CWLPLLA Sbjct: 4 EQEARWLAAQGVAVGADLVAAALRQLEFLAAVDRRRWLYEGPLLERAIHRYKTCWLPLLA 63
Query: 215 ASQGSTGDEGLPLQPPLDCAWIWHCHRLSP 304 + +G PL PLDC WIWHCHRL+P Sbjct: 64 KHTQAAVVDG-PLVVPLDCEWIWHCHRLNP 92
>tr|Q9ZQ47|Q9ZQ47_ARATH Putative uncharacterized protein At2g22660 OS=Arabidopsis thaliana GN=At2g22660 PE=2 SV=1 Length = 819
Score = 99.4 bits (246), Expect = 2e-19 Identities = 49/86 (56%), Positives = 58/86 (67%), Gaps = 1/86 (1%) Frame = +2
Query: 50 WRDAQSICFSIPLIPAALQQLRFLSQVDLHRCLYRGPAVSRAIQRYEECWLPLLAA-SQG 226 W +AQ I S+ L+ AA Q L FL VD +R LY GPA+ +AI RY CWLPLL S+ Sbjct: 11 WLEAQKIEISVDLLAAAKQHLLFLETVDRNRWLYDGPALEKAIYRYNACWLPLLVKYSES 70
Query: 227 STGDEGLPLQPPLDCAWIWHCHRLSP 304 S+ EG L PPLDC WIWHCHRL+P Sbjct: 71 SSVSEG-SLVPPLDCEWIWHCHRLNP 95
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