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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959539
Clone id TST39A01NGRL0004_P13
Library
Length 599
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_P13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AAGGATGTGGAATCTGGTTGAAGGGAAAGATGCTTGAAAATACAGATAAATTACAAAGGT
CAAAATAGGGGAGCACCTCAGGGCAAGAGAGCCTCAACATGTGTTCCGTTTTGGCAGTGG
CCATTTTAGACGGCCTGTTCCTGTTCTGCAGTCCCCTTGTCACAAGGTGTCAGACGGAAC
ATCCATGCTGTTCCGAACATTCCAGCCAGAATAGCATTCTGGTGTTTCAACCCCCTCTTC
CCACTGTTCCTTGTCACTACGCCGCTGTTAAAGTTGTGTATTTTCTGGGTTTTTTTTTGG
TTTTTTGGTAGTGGATATGTTCAAGAACCATGATTAGCTCATGAATTTACTGCACCTTTT
CTGTCTTCTTAATCTTAGATCCTGGAGGCGGTGTAAATCAAATTCCAGGAGAATGCACTA
TAACAGGCGATGTGCGGCTAACACCATTCTATGAGTAAGTGAGTGAGATATTTCATATAT
TCAGGTGAAAATGTGAAGTCTGCTATTCTTTTTTCTCTTCTATCATGGGTTCAAGTATCT
ATTATCAATTACTTTAAATATAAGCTGATTTTTTCAGTGAGTCAATTGTGTGCTCCATA
■■Homology search results ■■ -
sp_hit_id P54638
Definition sp|P54638|ARGE_DICDI Acetylornithine deacetylase OS=Dictyostelium discoideum
Align length 23
Score (bit) 39.3
E-value 0.015
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959539|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_P13, 5'
         (599 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P54638|ARGE_DICDI Acetylornithine deacetylase OS=Dictyosteliu...    39   0.015
sp|A1AX74|RPOC_RUTMC DNA-directed RNA polymerase subunit beta' O...    30   7.1  

>sp|P54638|ARGE_DICDI Acetylornithine deacetylase OS=Dictyostelium
           discoideum GN=argE PE=1 SV=2
          Length = 447

 Score = 39.3 bits (90), Expect = 0.015
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +3

Query: 387 GGVNQIPGECTITGDVRLTPFYE 455
           G  N IPGE TI GD+RLTPFY+
Sbjct: 282 GSYNTIPGESTICGDIRLTPFYD 304


>sp|A1AX74|RPOC_RUTMC DNA-directed RNA polymerase subunit beta'
           OS=Ruthia magnifica subsp. Calyptogena magnifica GN=rpoC
           PE=3 SV=1
          Length = 1395

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 16/34 (47%), Positives = 21/34 (61%)
 Frame = -1

Query: 293 KTQKIHNFNSGVVTRNSGKRGLKHQNAILAGMFG 192
           KTQK+ +FNS  +  +SG RG   Q   L+GM G
Sbjct: 713 KTQKLASFNSVYMMADSGARGSSAQMRQLSGMRG 746
tr_hit_id Q25BK2
Definition tr|Q25BK2|Q25BK2_BRAOL Acetylornithine deacetylase, putative OS=Brassica oleracea
Align length 25
Score (bit) 55.1
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959539|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_P13, 5'
         (599 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q25BK2|Q25BK2_BRAOL Acetylornithine deacetylase, putative OS=...    55   3e-06
tr|Q6ZGS9|Q6ZGS9_ORYSJ Os02g0690800 protein OS=Oryza sativa subs...    54   7e-06
tr|Q2A960|Q2A960_BRAOL Acetylornithine deacetylase, putative OS=...    54   7e-06
tr|B8AGS8|B8AGS8_ORYSI Putative uncharacterized protein OS=Oryza...    54   7e-06
tr|B6TIJ2|B6TIJ2_MAIZE Acetylornithine deacetylase OS=Zea mays P...    54   7e-06
tr|A9NUW9|A9NUW9_PICSI Putative uncharacterized protein OS=Picea...    54   7e-06
tr|A3AAA6|A3AAA6_ORYSJ Putative uncharacterized protein OS=Oryza...    54   7e-06
tr|Q9C5C4|Q9C5C4_ARATH Putative N-acetylornithine deacetylase OS...    53   2e-05
tr|O49682|O49682_ARATH N-acetylornithine deacetylase-like protei...    53   2e-05
tr|A7PC95|A7PC95_VITVI Chromosome chr2 scaffold_11, whole genome...    52   2e-05
tr|A5BNC5|A5BNC5_VITVI Putative uncharacterized protein OS=Vitis...    52   2e-05
tr|Q9FVL5|Q9FVL5_CUCPE Silverleaf whitefly-induced protein 1 OS=...    52   3e-05
tr|A9RKM4|A9RKM4_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-05
tr|Q9MB49|Q9MB49_CITLA DIP-1 OS=Citrullus lanatus GN=dip-1 PE=2 ...    51   4e-05
tr|A8I459|A8I459_CHLRE Acetylornithine deacetylase OS=Chlamydomo...    46   0.001
tr|A4RTE3|A4RTE3_OSTLU Predicted protein OS=Ostreococcus lucimar...    42   0.027
tr|Q01DV7|Q01DV7_OSTTA DIP-1 (ISS) OS=Ostreococcus tauri GN=Ot02...    41   0.060
tr|B0NM11|B0NM11_BACSE Putative uncharacterized protein OS=Bacte...    33   9.6  

>tr|Q25BK2|Q25BK2_BRAOL Acetylornithine deacetylase, putative
           OS=Brassica oleracea GN=23.t00059 PE=4 SV=1
          Length = 407

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 21/25 (84%), Positives = 25/25 (100%)
 Frame = +3

Query: 381 PGGGVNQIPGECTITGDVRLTPFYE 455
           PGGG+NQIPGECT++GDVRLTPFY+
Sbjct: 256 PGGGINQIPGECTVSGDVRLTPFYD 280


>tr|Q6ZGS9|Q6ZGS9_ORYSJ Os02g0690800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1148_D05.1 PE=2 SV=1
          Length = 443

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +3

Query: 381 PGGGVNQIPGECTITGDVRLTPFYE*VSEI 470
           PGGG+NQIPGECTI+GD+RLTPFY   S +
Sbjct: 279 PGGGLNQIPGECTISGDIRLTPFYSTTSVV 308


>tr|Q2A960|Q2A960_BRAOL Acetylornithine deacetylase, putative
           OS=Brassica oleracea GN=40.t00060 PE=4 SV=1
          Length = 437

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 20/25 (80%), Positives = 25/25 (100%)
 Frame = +3

Query: 381 PGGGVNQIPGECTITGDVRLTPFYE 455
           PGGG+NQIPG+CT++GDVRLTPFY+
Sbjct: 275 PGGGINQIPGDCTVSGDVRLTPFYD 299


>tr|B8AGS8|B8AGS8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08537 PE=4 SV=1
          Length = 443

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +3

Query: 381 PGGGVNQIPGECTITGDVRLTPFYE*VSEI 470
           PGGG+NQIPGECTI+GD+RLTPFY   S +
Sbjct: 279 PGGGLNQIPGECTISGDIRLTPFYSTTSVV 308


>tr|B6TIJ2|B6TIJ2_MAIZE Acetylornithine deacetylase OS=Zea mays PE=2
           SV=1
          Length = 447

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = +3

Query: 381 PGGGVNQIPGECTITGDVRLTPFY 452
           PGGG+NQIPGECTI+GDVRLTPFY
Sbjct: 282 PGGGLNQIPGECTISGDVRLTPFY 305


>tr|A9NUW9|A9NUW9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 431

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 22/24 (91%), Positives = 24/24 (100%)
 Frame = +3

Query: 381 PGGGVNQIPGECTITGDVRLTPFY 452
           PGGG+NQIPGECTI+GDVRLTPFY
Sbjct: 269 PGGGLNQIPGECTISGDVRLTPFY 292


>tr|A3AAA6|A3AAA6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_007728 PE=4 SV=1
          Length = 457

 Score = 53.9 bits (128), Expect = 7e-06
 Identities = 22/30 (73%), Positives = 26/30 (86%)
 Frame = +3

Query: 381 PGGGVNQIPGECTITGDVRLTPFYE*VSEI 470
           PGGG+NQIPGECTI+GD+RLTPFY   S +
Sbjct: 279 PGGGLNQIPGECTISGDIRLTPFYSTTSVV 308


>tr|Q9C5C4|Q9C5C4_ARATH Putative N-acetylornithine deacetylase
           OS=Arabidopsis thaliana GN=At4g17830 PE=2 SV=1
          Length = 440

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 20/25 (80%), Positives = 24/25 (96%)
 Frame = +3

Query: 381 PGGGVNQIPGECTITGDVRLTPFYE 455
           P GG+NQIPGECT++GDVRLTPFY+
Sbjct: 278 PAGGINQIPGECTVSGDVRLTPFYD 302


>tr|O49682|O49682_ARATH N-acetylornithine deacetylase-like protein,
           (Fragment) OS=Arabidopsis thaliana GN=AT4g17830 PE=4
           SV=2
          Length = 401

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 20/25 (80%), Positives = 24/25 (96%)
 Frame = +3

Query: 381 PGGGVNQIPGECTITGDVRLTPFYE 455
           P GG+NQIPGECT++GDVRLTPFY+
Sbjct: 239 PAGGINQIPGECTVSGDVRLTPFYD 263


>tr|A7PC95|A7PC95_VITVI Chromosome chr2 scaffold_11, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00015771001
           PE=4 SV=1
          Length = 433

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 21/24 (87%), Positives = 23/24 (95%)
 Frame = +3

Query: 381 PGGGVNQIPGECTITGDVRLTPFY 452
           PGGG+NQIP ECTI+GDVRLTPFY
Sbjct: 272 PGGGINQIPAECTISGDVRLTPFY 295