DK959440
Clone id TST39A01NGRL0004_L03
Library
Length 407
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_L03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
AATCAACATGGCATCAAACATCTCTTACGGACAATCTGAAAAAGAAATCAAAGAGCGTCA
ACAAGACTTTGGCCAAAAAGAAAACTTCGAGGATATTTATGGCAGAGACAAGTATGGTGC
TGGTCCTGTTGGCGCTGAAAAGCCTTCAGAGGGTTTAGGCTCTCAAACAGGATTCAAACT
AGTTGAGTTGGGAGAACATTTTTCTCGAGGAGACAGCTCTACCTTAGCCTCAGAAGAACA
ACTCGAACAACAGAAGTTGGCTCATCAACAACACCTTCAACAAAACAGAGCTCTTGGAGC
TGAACAAAAGGAAATTGACACACGCTAATGAAGTCAATACGATGTTTATGTTGTAAATAT
TACTAATAAATATATCACTCCATAAGAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O13798
Definition sp|O13798|CID16_SCHPO Caffeine-induced protein 16 OS=Schizosaccharomyces pombe
Align length 46
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959440|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_L03, 5'
(383 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O13798|CID16_SCHPO Caffeine-induced protein 16 OS=Schizosacch... 32 1.3
sp|P49771|FLT3L_HUMAN SL cytokine OS=Homo sapiens GN=FLT3LG PE=1... 30 2.8
sp|Q62296|TEAD4_MOUSE Transcriptional enhancer factor TEF-3 OS=M... 30 4.8
sp|P08200|IDH_ECOLI Isocitrate dehydrogenase [NADP] OS=Escherich... 29 6.3
sp|A6SZY0|SURE_JANMA 5'-nucleotidase surE OS=Janthinobacterium s... 29 8.2

>sp|O13798|CID16_SCHPO Caffeine-induced protein 16
OS=Schizosaccharomyces pombe GN=cid16 PE=2 SV=1
Length = 1202

Score = 31.6 bits (70), Expect = 1.3
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -1

Query: 212 LLEKNVLPTQLV*ILFES-LNPLKAFQRQQDQHHTCLCHKYPRSFL 78
L+E+NV P L+ +F + +K+F++ Q T C +YP+ L
Sbjct: 781 LIEENVFPKNLILFIFRKCVIGIKSFEKLQSYVFTYYCERYPKLIL 826


>sp|P49771|FLT3L_HUMAN SL cytokine OS=Homo sapiens GN=FLT3LG PE=1
SV=1
Length = 235

Score = 30.4 bits (67), Expect = 2.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = -3

Query: 201 KCSPNSTSLNPV*EPKPSEGFSAPTGPAPYLSL 103
+C P+S++L P P+P E +APT P P L L
Sbjct: 157 QCQPDSSTLPPPWSPRPLEA-TAPTAPQPPLLL 188


>sp|Q62296|TEAD4_MOUSE Transcriptional enhancer factor TEF-3 OS=Mus
musculus GN=Tead4 PE=2 SV=2
Length = 427

Score = 29.6 bits (65), Expect = 4.8
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = -3

Query: 192 PNSTSLNPV*EPKPSEGFSAPTGPAPYLSLP 100
P S + PV P P GF +P GP P S P
Sbjct: 172 PFSQNTYPVQPPLPLPGFESPAGPTPSPSAP 202


>sp|P08200|IDH_ECOLI Isocitrate dehydrogenase [NADP] OS=Escherichia
coli (strain K12) GN=icd PE=1 SV=1
Length = 416

Score = 29.3 bits (64), Expect = 6.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2

Query: 77 KENFEDIYGRDKYGAGPVGAEKPSEGLGSQTGFKLVELGEHFSRG 211
+EN EDIY ++ A AEK + L + G K + EH G
Sbjct: 153 RENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIG 197


>sp|A6SZY0|SURE_JANMA 5'-nucleotidase surE OS=Janthinobacterium sp.
(strain Marseille) GN=surE PE=3 SV=1
Length = 245

Score = 28.9 bits (63), Expect = 8.2
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Frame = +2

Query: 17 NISYGQSEKEIKERQQDFGQKE---NFEDIYGRDKYGAGPVGAEKPSEGLGSQTGFKLVE 187
N+ Y Q + + R Q E +D +GRD Y GP G +K + G T F
Sbjct: 162 NLPYEQMKSPVATRLGKRHQSEAVIKAQDPHGRDIYWIGPCGGQKDA---GEGTDFHATA 218

Query: 188 LG 193
LG
Sbjct: 219 LG 220


tr_hit_id B6T4Q5
Definition tr|B6T4Q5|B6T4Q5_MAIZE Pro-resilin OS=Zea mays
Align length 46
Score (bit) 35.8
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959440|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_L03, 5'
(383 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6T4Q5|B6T4Q5_MAIZE Pro-resilin OS=Zea mays PE=2 SV=1 36 1.1
tr|B4F957|B4F957_MAIZE Putative uncharacterized protein OS=Zea m... 36 1.1
tr|A2DRH9|A2DRH9_TRIVA Putative uncharacterized protein OS=Trich... 33 9.4

>tr|B6T4Q5|B6T4Q5_MAIZE Pro-resilin OS=Zea mays PE=2 SV=1
Length = 393

Score = 35.8 bits (81), Expect = 1.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2

Query: 26 YGQSEKEIKERQQDFGQKENFEDIYGRDKYGAGPVGAEKPSEGLGS 163
YG+ ++E + +G+K E+ YG YG+G G +P E GS
Sbjct: 120 YGRKKQEEESYGSGYGRKPQAEESYGSGGYGSGYGGQTRPEESYGS 165


>tr|B4F957|B4F957_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 377

Score = 35.8 bits (81), Expect = 1.1
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2

Query: 26 YGQSEKEIKERQQDFGQKENFEDIYGRDKYGAGPVGAEKPSEGLGS 163
YG+ ++E + +G+K E+ YG YG+G G +P E GS
Sbjct: 120 YGRKKQEEESYGSGYGRKPQAEESYGSGGYGSGYGGQTRPEESYGS 165


>tr|A2DRH9|A2DRH9_TRIVA Putative uncharacterized protein
OS=Trichomonas vaginalis G3 GN=TVAG_280580 PE=4 SV=1
Length = 922

Score = 32.7 bits (73), Expect = 9.4
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -3

Query: 225 KVELSPR-EKCSPNSTSLNPV*EPKPSEGFSAPTGPAP 115
K+E SP+ EK P + LNP PK G S+PT +P
Sbjct: 311 KIEESPKTEKVGPRYSPLNPKYSPKSLSGISSPTKSSP 348