DK959258
Clone id TST39A01NGRL0004_D06
Library
Length 204
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_D06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence
GGCTCTTGTACTGGTTGTGCGGCATAGTAAAACCATGGCTGCTGCGTCTCTGACCTCTTT
AGTGGCCCCTTCTTTCGTCCAGCCCGCGCTGGACAAGGGATCCCTCTCTGGCTCGTCGTT
TACGCCATAGTCTGTGTCCACTTCGTTTGGTGTCAGGCCCTGCCCTTCGGTTTCATGCTC
TCTTTGTGATGACCACCAGGAGCT
■■Homology search results ■■ -
sp_hit_id A7I6L5
Definition sp|A7I6L5|GATB_METB6 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Methanoregula boonei (strain 6A8)
Align length 52
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959258|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_D06, 5'
(204 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A7I6L5|GATB_METB6 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 32 1.3
sp|Q1LSP0|TGT_BAUCH Queuine tRNA-ribosyltransferase OS=Baumannia... 30 3.8
sp|A8H6B7|META_SHEPA Homoserine O-succinyltransferase OS=Shewane... 29 8.4

>sp|A7I6L5|GATB_METB6 Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B OS=Methanoregula boonei
(strain 6A8) GN=gatB PE=3 SV=1
Length = 482

Score = 31.6 bits (70), Expect = 1.3
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = -1

Query: 186 QREHETEGQGLTPN----EVDTDYGVNDEPERDPLSSAGWTKEGATKEVRDA 43
+ H E +G+T + E + DY EP+ PL W K+ A E+ DA
Sbjct: 245 ETRHYLEARGITQSARSKETENDYRYFPEPDLRPLRVQSWVKDIALPELPDA 296


>sp|Q1LSP0|TGT_BAUCH Queuine tRNA-ribosyltransferase OS=Baumannia
cicadellinicola subsp. Homalodisca coagulata GN=tgt PE=3
SV=1
Length = 370

Score = 30.0 bits (66), Expect = 3.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -1

Query: 159 GLTPNEVDTDYGVNDEPERDPLSSAGWTKEGATKEVRDAAAMVLLC 22
G + D GV + P P+ + G K T+EV+D ++LC
Sbjct: 11 GARRGRIQFDRGVVETPAFMPVGTYGTVKSLTTEEVKDTGTQMILC 56


>sp|A8H6B7|META_SHEPA Homoserine O-succinyltransferase OS=Shewanella
pealeana (strain ATCC 700345 / ANG-SQ1) GN=metA PE=3
SV=1
Length = 314

Score = 28.9 bits (63), Expect = 8.4
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1

Query: 162 QGLTPNEVDTDYGVNDEPERDPLSSAGWTKEGA 64
QGLTP E+ +Y ND+P+++P+S W G+
Sbjct: 253 QGLTP-ELPKNYFKNDDPDQEPISR--WHSHGS 282


tr_hit_id Q0B0K8
Definition tr|Q0B0K8|Q0B0K8_SYNWW Putative uncharacterized protein OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen)
Align length 62
Score (bit) 32.7
E-value 9.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959258|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_D06, 5'
(204 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q0B0K8|Q0B0K8_SYNWW Putative uncharacterized protein OS=Syntr... 33 9.2
tr|A1A371|A1A371_BIFAA Transposase subunit B OS=Bifidobacterium ... 33 9.2

>tr|Q0B0K8|Q0B0K8_SYNWW Putative uncharacterized protein
OS=Syntrophomonas wolfei subsp. wolfei (strain
Goettingen) GN=Swol_0141 PE=3 SV=1
Length = 758

Score = 32.7 bits (73), Expect = 9.2
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
Frame = -1

Query: 204 SSWWSSQREHETEGQGLTPNEVDTDYGVNDEPERDPLS-----SAGWTKEGATKEVRDAA 40
S W+ G+ DT++G ND R+ ++ +AGW EGA K D A
Sbjct: 95 SDHWAKAFISTANANGIVSGYSDTEFGPNDPITREQMAVMIVKAAGWKAEGAAKVFPDDA 154

Query: 39 AM 34
++
Sbjct: 155 SI 156


>tr|A1A371|A1A371_BIFAA Transposase subunit B OS=Bifidobacterium
adolescentis (strain ATCC 15703 / DSM 20083) GN=tnpB
PE=4 SV=1
Length = 310

Score = 32.7 bits (73), Expect = 9.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = -1

Query: 201 SWWSSQREHETEGQGLTPNEVDTDYGVNDEPERDPL 94
SWW+S+R H++ G TP +T+Y N + PL
Sbjct: 276 SWWNSERLHQSLGY-RTPERTETEYYANQAAQAAPL 310