DK959220
Clone id TST39A01NGRL0004_B16
Library
Length 668
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0004_B16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTGAAATCACGCATCAAATCGAGAGATTTTTCCGCAGCTCGAGAGAGGAGAAGCAATGGG
GAGCGTCGCAATGCAGAGTTGGTCTGCGCAGCCGCTCTTGCTACGCCATCTCTCTGCAGT
CTCAAGTTTTCATAGTTTGCACAGTGGTCCTTTGTTTCTTCTAGAGTCGGCTCAGGGGCG
CAAACAGCGTCGTCTGCCTCCCTCAATTAACTGCAAAATGTTCGTCCCGGGATTTGGGAG
CCAGTCACCTGAGGCTAAAGCAGCATCTACCCTTCACAATTATTTTACTTATCTTGCTGT
CCAGATAGTGCTGGCACAACTTGAGTATTATAACCCGGAGGCGTACAAAGAGCTCAGGGA
GTTCGTTGACAGAACACCACTGAATGATGGAGACAAGTTTTGTGCAACACTTATGCGGGA
ATCTCCAAGGCAAAAGGGATTAGCTATGCGAATCTTGGAGGTCCGTTCTACATATGCTTC
AGAAGATTTCGAATGGGATAATGTAAAAAAGCTAGCTATCAAGTATGGGACAGAAGCAAA
CACCAATCTGATGCGTGAGTTTCTAAGAGAAACAAGCAGCATGGAATAGATGATTGATAG
CCACAAAGGTCATATAAAGGTTCCAGCTGCTTGATTCCAAATGGCCATTCATCCAAAAGT
ACAGGTAA
■■Homology search results ■■ -
sp_hit_id A1WGU4
Definition sp|A1WGU4|PYRF_VEREI Orotidine 5'-phosphate decarboxylase OS=Verminephrobacter eiseniae (strain EF01-2)
Align length 77
Score (bit) 32.0
E-value 3.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959220|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_B16, 5'
(668 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A1WGU4|PYRF_VEREI Orotidine 5'-phosphate decarboxylase OS=Ver... 32 3.0

>sp|A1WGU4|PYRF_VEREI Orotidine 5'-phosphate decarboxylase
OS=Verminephrobacter eiseniae (strain EF01-2) GN=pyrF
PE=3 SV=1
Length = 274

Score = 32.0 bits (71), Expect = 3.0
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Frame = +2

Query: 47 GEAMGSVAMQSWSAQPLLLRHLSAVSSFHSLHSGPLFLLESA----QGRKQRRLPPSINC 214
G+ + + + S + QPLL HL++++ +G L L+ A + + R L P++
Sbjct: 152 GDDLQNQRLASVAGQPLLYEHLASLAQGPWNRNGQLGLVVGATYPQEIERVRSLAPTL-- 209

Query: 215 KMFVPGFGSQSPEAKAA 265
+ +PG G+Q +A AA
Sbjct: 210 PLLIPGVGAQGGDAAAA 226


tr_hit_id A9NLG6
Definition tr|A9NLG6|A9NLG6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 128
Score (bit) 174.0
E-value 4.0e-42
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK959220|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0004_B16, 5'
(668 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NLG6|A9NLG6_PICSI Putative uncharacterized protein OS=Picea... 174 4e-42
tr|Q94AU9|Q94AU9_ARATH Putative uncharacterized protein At4g0433... 173 1e-41
tr|A7QUK8|A7QUK8_VITVI Chromosome chr10 scaffold_179, whole geno... 173 1e-41
tr|Q7EZV3|Q7EZV3_ORYSJ Os08g0425200 protein OS=Oryza sativa subs... 161 4e-38
tr|A2YVD6|A2YVD6_ORYSI Putative uncharacterized protein OS=Oryza... 161 4e-38
tr|A9SKM1|A9SKM1_PHYPA Predicted protein (Fragment) OS=Physcomit... 146 1e-33
tr|B6TZV7|B6TZV7_MAIZE Putative uncharacterized protein OS=Zea m... 106 1e-21
tr|Q00X91|Q00X91_OSTTA Chromosome 13 contig 1, DNA sequence OS=O... 77 7e-13
tr|A8HQH2|A8HQH2_CHLRE Predicted protein (Fragment) OS=Chlamydom... 77 1e-12
tr|A4S6B8|A4S6B8_OSTLU Predicted protein OS=Ostreococcus lucimar... 74 6e-12
tr|A4S2Z1|A4S2Z1_OSTLU Predicted protein (Fragment) OS=Ostreococ... 70 2e-10
tr|Q9XEA2|Q9XEA2_ARATH Putative uncharacterized protein T19B17.5... 64 1e-08
tr|A4RTZ0|A4RTZ0_OSTLU Predicted protein OS=Ostreococcus lucimar... 64 1e-08
tr|A4S9V6|A4S9V6_OSTLU Predicted protein OS=Ostreococcus lucimar... 62 3e-08
tr|Q00SN2|Q00SN2_OSTTA Chromosome 18 contig 1, DNA sequence OS=O... 61 7e-08
tr|B4WNZ9|B4WNZ9_9SYNE RbcX protein OS=Synechococcus sp. PCC 733... 55 5e-06
tr|A8ITH2|A8ITH2_CHLRE Predicted protein (Fragment) OS=Chlamydom... 54 9e-06
tr|Q2LJE0|Q2LJE0_FISMU Chaperonin-like protein OS=Fischerella mu... 53 2e-05
tr|A3INA6|A3INA6_9CHRO Putative uncharacterized protein OS=Cyano... 52 3e-05
tr|B1WXH2|B1WXH2_CYAA5 Chaperonin-like protein RbcX OS=Cyanothec... 52 4e-05
tr|Q00U51|Q00U51_OSTTA Chromosome 16 contig 1, DNA sequence OS=O... 51 7e-05
tr|Q4C1R0|Q4C1R0_CROWT Chaperonin-like RbcX OS=Crocosphaera wats... 50 2e-04
tr|B8HQS4|B8HQS4_9CHRO Chaperonin family protein RbcX OS=Cyanoth... 49 2e-04
tr|Q2JIP4|Q2JIP4_SYNJB Chaperon-like protein RbcX OS=Synechococc... 49 4e-04
tr|Q9R3Q3|Q9R3Q3_MICAE RbcX protein OS=Microcystis aeruginosa GN... 48 6e-04
tr|B3EYS6|B3EYS6_9CHRO RbcX OS=Microcystis sp. FACHB-930 GN=rbcX... 48 6e-04
tr|Q2LJC0|Q2LJC0_9NOSO Chaperonin-like protein OS=Nostoc sp. SAG... 47 8e-04
tr|B5TBL5|B5TBL5_9NOSO Chaperonin-like protein OS=Nostoc sp. 'Le... 47 8e-04
tr|A7NZQ6|A7NZQ6_VITVI Chromosome chr6 scaffold_3, whole genome ... 47 0.001
tr|Q2JV66|Q2JV66_SYNJA Chaperon-like protein RbcX OS=Synechococc... 47 0.001

>tr|A9NLG6|A9NLG6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 171

Score = 174 bits (441), Expect = 4e-42
Identities = 86/128 (67%), Positives = 101/128 (78%), Gaps = 1/128 (0%)
Frame = +2

Query: 206 INC-KMFVPGFGSQSPEAKAASTLHNYFTYLAVQIVLAQLEYYNPEAYKELREFVDRTPL 382
I C KMFVPGF SPEAKAA LH +FTYLAV+IVLAQL+ YN EAY EL EFV RT L
Sbjct: 44 IRCHKMFVPGFPEMSPEAKAAGQLHTFFTYLAVKIVLAQLQSYNKEAYGELMEFVSRTSL 103

Query: 383 NDGDKFCATLMRESPRQKGLAMRILEVRSTYASEDFEWDNVKKLAIKYGTEANTNLMREF 562
NDGDKFCA+LMRESPR KGLAMRI+EVRS YA DFEW+ ++KL ++ E+N LMR++
Sbjct: 104 NDGDKFCASLMRESPRHKGLAMRIMEVRSAYAQLDFEWEKLRKLVLENANESNKKLMRDY 163

Query: 563 LRETSSME 586
+ ETS +E
Sbjct: 164 ISETSRVE 171


>tr|Q94AU9|Q94AU9_ARATH Putative uncharacterized protein At4g04330
OS=Arabidopsis thaliana GN=At4g04330 PE=2 SV=1
Length = 174

Score = 173 bits (438), Expect = 1e-41
Identities = 87/143 (60%), Positives = 109/143 (76%)
Frame = +2

Query: 158 LLESAQGRKQRRLPPSINCKMFVPGFGSQSPEAKAASTLHNYFTYLAVQIVLAQLEYYNP 337
L++S++ KQ R+ + KM+VPGFG SPEAKAA LH++FTY+AV+IV AQLE YNP
Sbjct: 30 LMQSSRKCKQTRICSN---KMYVPGFGEASPEAKAAKHLHDFFTYVAVRIVSAQLESYNP 86

Query: 338 EAYKELREFVDRTPLNDGDKFCATLMRESPRQKGLAMRILEVRSTYASEDFEWDNVKKLA 517
EAY ELREF+D ++DGDKFCATLMR S R LA+RILEVRS Y DFEWDN+K+LA
Sbjct: 87 EAYMELREFLDTNSVSDGDKFCATLMRRSSRHMNLALRILEVRSAYCKNDFEWDNMKRLA 146

Query: 518 IKYGTEANTNLMREFLRETSSME 586
K ++NT LMRE++ ETS +E
Sbjct: 147 FKNVDDSNTRLMREYVLETSHVE 169


>tr|A7QUK8|A7QUK8_VITVI Chromosome chr10 scaffold_179, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00006889001
PE=4 SV=1
Length = 186

Score = 173 bits (438), Expect = 1e-41
Identities = 89/159 (55%), Positives = 111/159 (69%), Gaps = 1/159 (0%)
Frame = +2

Query: 113 SAVSSFHSLHSGPLFLLESAQGRKQRRLPPSINC-KMFVPGFGSQSPEAKAASTLHNYFT 289
SA SF S S +++ P I+C KM+V GFG SPEAKAA +HN+FT
Sbjct: 27 SAQLSFFSYRPDRTRAYPSRPWKQRISQPTRIHCQKMYVAGFGEASPEAKAAKNIHNFFT 86

Query: 290 YLAVQIVLAQLEYYNPEAYKELREFVDRTPLNDGDKFCATLMRESPRQKGLAMRILEVRS 469
Y+AV+IV AQL+ YNPEAY+EL EF+ R L+DGDKFC+ LMRES R KGLA+RILEVRS
Sbjct: 87 YIAVRIVTAQLQSYNPEAYEELMEFLSRHSLSDGDKFCSDLMRESSRHKGLALRILEVRS 146

Query: 470 TYASEDFEWDNVKKLAIKYGTEANTNLMREFLRETSSME 586
Y DFEWDN+K+LA K E+NT +MR+++ ETS E
Sbjct: 147 AYCKNDFEWDNLKRLAFKMVDESNTGIMRDYVLETSHSE 185


>tr|Q7EZV3|Q7EZV3_ORYSJ Os08g0425200 protein OS=Oryza sativa subsp.
japonica GN=P0456B03.109 PE=2 SV=1
Length = 186

Score = 161 bits (407), Expect = 4e-38
Identities = 84/150 (56%), Positives = 105/150 (70%), Gaps = 4/150 (2%)
Frame = +2

Query: 149 PLFLLESAQGRKQR----RLPPSINCKMFVPGFGSQSPEAKAASTLHNYFTYLAVQIVLA 316
PL+ E + R++R PP + KM+VPGFG SPE KAA L ++F Y+AV++VL
Sbjct: 35 PLWGTEVRRRRRRRFSSLETPPRCS-KMYVPGFGEGSPEKKAARNLQHFFNYIAVRVVLT 93

Query: 317 QLEYYNPEAYKELREFVDRTPLNDGDKFCATLMRESPRQKGLAMRILEVRSTYASEDFEW 496
QLE YN EAY EL +FV+R LND D FC L+RESPR K LAMRILEVRS Y DFEW
Sbjct: 94 QLESYNREAYGELMDFVNRNSLNDADTFCKKLIRESPRHKQLAMRILEVRSAYVKHDFEW 153

Query: 497 DNVKKLAIKYGTEANTNLMREFLRETSSME 586
DN+K+L+ K EANT LMR+++ ETS +E
Sbjct: 154 DNLKRLSFKMVDEANTKLMRDYVLETSHIE 183


>tr|A2YVD6|A2YVD6_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_29294 PE=4 SV=1
Length = 186

Score = 161 bits (407), Expect = 4e-38
Identities = 84/150 (56%), Positives = 105/150 (70%), Gaps = 4/150 (2%)
Frame = +2

Query: 149 PLFLLESAQGRKQR----RLPPSINCKMFVPGFGSQSPEAKAASTLHNYFTYLAVQIVLA 316
PL+ E + R++R PP + KM+VPGFG SPE KAA L ++F Y+AV++VL
Sbjct: 35 PLWGTEVRRRRRRRFSSLETPPRCS-KMYVPGFGEGSPEKKAARNLQHFFNYIAVRVVLT 93

Query: 317 QLEYYNPEAYKELREFVDRTPLNDGDKFCATLMRESPRQKGLAMRILEVRSTYASEDFEW 496
QLE YN EAY EL +FV+R LND D FC L+RESPR K LAMRILEVRS Y DFEW
Sbjct: 94 QLESYNREAYGELMDFVNRNSLNDADTFCKKLIRESPRHKQLAMRILEVRSAYVKHDFEW 153

Query: 497 DNVKKLAIKYGTEANTNLMREFLRETSSME 586
DN+K+L+ K EANT LMR+++ ETS +E
Sbjct: 154 DNLKRLSFKMVDEANTKLMRDYVLETSHIE 183


>tr|A9SKM1|A9SKM1_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_131396 PE=4 SV=1
Length = 121

Score = 146 bits (368), Expect = 1e-33
Identities = 73/121 (60%), Positives = 93/121 (76%), Gaps = 2/121 (1%)
Frame = +2

Query: 230 GFGSQSPEAKAASTLHNYFTYLAVQIVLAQLEYYNPEAYKELREFVDRTPLNDGDKFCAT 409
GFG SPEAKAA+ LHN+FTY+AV+IV +QLE YN EAY +L EF+++ PLNDGDKF A
Sbjct: 1 GFGEASPEAKAAAALHNFFTYVAVKIVASQLEDYNKEAYVDLMEFLEKMPLNDGDKFIAA 60

Query: 410 LMRESPRQKGLAMRI--LEVRSTYASEDFEWDNVKKLAIKYGTEANTNLMREFLRETSSM 583
LMRES R K L + + L+VRS YA++DFEWDN++ L+ K E N LMR++L ETS+M
Sbjct: 61 LMRESFRHKNLDVVVLRLQVRSAYANQDFEWDNLQSLSFKQLEEGNKTLMRKYLTETSNM 120

Query: 584 E 586
E
Sbjct: 121 E 121


>tr|B6TZV7|B6TZV7_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 145

Score = 106 bits (265), Expect = 1e-21
Identities = 57/100 (57%), Positives = 67/100 (67%), Gaps = 4/100 (4%)
Frame = +2

Query: 155 FLLESAQGRKQRRLP----PSINCKMFVPGFGSQSPEAKAASTLHNYFTYLAVQIVLAQL 322
FL ++RRL P+ KM+VPGFG SPE KAA L ++F Y+AV IVLAQL
Sbjct: 29 FLRSRRATERRRRLASSAAPARCSKMYVPGFGEGSPERKAAINLQHFFNYIAVSIVLAQL 88

Query: 323 EYYNPEAYKELREFVDRTPLNDGDKFCATLMRESPRQKGL 442
E YN EAY EL+EF+ RT LND + FC LMRESPR KGL
Sbjct: 89 ESYNREAYLELKEFISRTSLNDAEIFCEKLMRESPRLKGL 128


>tr|Q00X91|Q00X91_OSTTA Chromosome 13 contig 1, DNA sequence
OS=Ostreococcus tauri GN=Ot13g00920 PE=4 SV=1
Length = 196

Score = 77.4 bits (189), Expect = 7e-13
Identities = 53/163 (32%), Positives = 82/163 (50%), Gaps = 28/163 (17%)
Frame = +2

Query: 164 ESAQGRKQ---RRLPPSINCKMFVPG--FGSQSPEAKAASTLHNYFTYLAVQIVLAQLEY 328
+++Q R++ RR S + KMFVP FG +SPE +A+ L+ TY++ IV+ QLE
Sbjct: 26 DASQSRRRFGSRRKCLSEDGKMFVPAGAFGGRSPERRASEMLNAMITYVSAWIVIGQLEN 85

Query: 329 YNPE-----------------------AYKELREFVDRTPLNDGDKFCATLMRESPRQKG 439
P ++ L ++++ P+ DGD + L + +P
Sbjct: 86 VAPRRSLAGEDANERNESNDEAQRVTTSHDFLLDYLESNPVRDGDSWLTELTKVNPT--- 142

Query: 440 LAMRILEVRSTYASEDFEWDNVKKLAIKYGTEANTNLMREFLR 568
L RI VR YAS+DFEW NV+KL +K N MRE+++
Sbjct: 143 LGERIGTVRVAYASDDFEWKNVEKLCVKSMVVGNETAMREWIK 185


>tr|A8HQH2|A8HQH2_CHLRE Predicted protein (Fragment)
OS=Chlamydomonas reinhardtii GN=CGL41 PE=4 SV=1
Length = 201

Score = 76.6 bits (187), Expect = 1e-12
Identities = 49/125 (39%), Positives = 73/125 (58%), Gaps = 11/125 (8%)
Frame = +2

Query: 215 KMFVPG--FGSQSPEAKAASTLHNYFTYLAVQIVLAQLE-------YYNPEAYKELREFV 367
+M +P F SPE KAA L + FT++A ++VL QL+ YN +AY +L +F+
Sbjct: 33 RMHIPADSFSGASPERKAAVALRSLFTFVAARVVLEQLQGPGGPETTYNQQAYLDLMDFL 92

Query: 368 DRTPL--NDGDKFCATLMRESPRQKGLAMRILEVRSTYASEDFEWDNVKKLAIKYGTEAN 541
TP+ + GD++ A +MR + LA+R++EVR Y E FEW ++A + EAN
Sbjct: 93 G-TPMKGDGGDEWMAAVMR---KNHALALRLMEVREAYLDE-FEWGKTMEMASRETREAN 147

Query: 542 TNLMR 556
T LMR
Sbjct: 148 TRLMR 152


>tr|A4S6B8|A4S6B8_OSTLU Predicted protein OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_27062 PE=4 SV=1
Length = 144

Score = 74.3 bits (181), Expect = 6e-12
Identities = 47/140 (33%), Positives = 71/140 (50%), Gaps = 23/140 (16%)
Frame = +2

Query: 218 MFVPG--FGSQSPEAKAASTLHNYFTYLAVQIVLAQLEYYNPE----------------- 340
MFVP FG SPE +A+ ++ TY++ IV++QLE P
Sbjct: 1 MFVPAGAFGGVSPERRASELMNAMLTYVSAWIVISQLENVAPRRSVAGEDAGEDGEGEAR 60

Query: 341 ----AYKELREFVDRTPLNDGDKFCATLMRESPRQKGLAMRILEVRSTYASEDFEWDNVK 508
+++ L ++++ P+ DG+++ L R +P LA RI+ VR YA EDFEW NV
Sbjct: 61 RVTTSHEFLLDYLEANPVRDGEQWLIALTRVNPT---LAERIMAVRRAYAEEDFEWHNVA 117

Query: 509 KLAIKYGTEANTNLMREFLR 568
KL + N MRE+L+
Sbjct: 118 KLTSESIAAGNERAMREWLK 137