DK959180 |
Clone id |
TST39A01NGRL0003_P22 |
Library |
TST39 |
Length |
231 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_P22. 5' end sequence. |
Accession |
DK959180 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL854Contig1 |
Sequence |
CCGAAGAGTCTCTCTCTCTCTCTCTCCCCCCCCCACGCCACAACCATACACTCACGCGCA CACTCGCACCCACACTCACAGAAACCTTCGAAGGAGCCGACTCTGCTTTGTATACATCCT CGTGTGCTCTGACGCCAGTTTACATAATTTCCTGTGTCTTCTCCAATACTCTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCCCCCCGCCCCCCCCCCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8TB68 |
Definition |
sp|Q8TB68|PRR7_HUMAN Proline-rich protein 7 OS=Homo sapiens |
Align length |
26 |
Score (bit) |
26.9 |
E-value |
2.7 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959180|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0003_P22, 5' (231 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8TB68|PRR7_HUMAN Proline-rich protein 7 OS=Homo sapiens GN=P... 27 2.7 sp|P46062|SIPA1_MOUSE Signal-induced proliferation-associated pr... 30 4.9 sp|P56222|PO3F2_RAT POU domain, class 3, transcription factor 2 ... 30 4.9 sp|P31360|PO3F2_MOUSE POU domain, class 3, transcription factor ... 30 4.9 sp|P20265|PO3F2_HUMAN POU domain, class 3, transcription factor ... 30 4.9 sp|O82798|ARR4_ARATH Two-component response regulator ARR4 OS=Ar... 29 8.5
>sp|Q8TB68|PRR7_HUMAN Proline-rich protein 7 OS=Homo sapiens GN=PRR7 PE=2 SV=1 Length = 274
Score = 26.9 bits (58), Expect(2) = 2.7 Identities = 12/26 (46%), Positives = 14/26 (53%), Gaps = 1/26 (3%) Frame = +1
Query: 49 HSRAHSHPHSQK-PSKEPTLLCIHPR 123 H+ AH HPH P PT L + PR Sbjct: 110 HAHAHPHPHHHALPHPPPTHLSVPPR 135
Score = 23.9 bits (50), Expect(2) = 2.7 Identities = 7/16 (43%), Positives = 11/16 (68%) Frame = +1
Query: 28 PPHATTIHSRAHSHPH 75 PPH + + + AH+H H Sbjct: 78 PPHRSRLEAPAHAHSH 93
>sp|P46062|SIPA1_MOUSE Signal-induced proliferation-associated protein 1 OS=Mus musculus GN=Sipa1 PE=2 SV=2 Length = 1037
Score = 29.6 bits (65), Expect = 4.9 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = +1
Query: 28 PPHATTIHSRAHSHPHSQKPSKEPTLLCIHPRVL 129 PP + +RAHSH + +P+ PT L P L Sbjct: 60 PPTPASPRARAHSHEDASRPAATPTRLFTDPLAL 93
>sp|P56222|PO3F2_RAT POU domain, class 3, transcription factor 2 OS=Rattus norvegicus GN=Pou3f2 PE=2 SV=1 Length = 445
Score = 29.6 bits (65), Expect = 4.9 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = +1
Query: 31 PHATTIHSRAHSHPHSQKPSKEP 99 PH H HSHPH Q P P Sbjct: 224 PHHADHHPHPHSHPHQQPPPPPP 246
>sp|P31360|PO3F2_MOUSE POU domain, class 3, transcription factor 2 OS=Mus musculus GN=Pou3f2 PE=2 SV=1 Length = 445
Score = 29.6 bits (65), Expect = 4.9 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = +1
Query: 31 PHATTIHSRAHSHPHSQKPSKEP 99 PH H HSHPH Q P P Sbjct: 224 PHHADHHPHPHSHPHQQPPPPPP 246
>sp|P20265|PO3F2_HUMAN POU domain, class 3, transcription factor 2 OS=Homo sapiens GN=POU3F2 PE=1 SV=4 Length = 443
Score = 29.6 bits (65), Expect = 4.9 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = +1
Query: 31 PHATTIHSRAHSHPHSQKPSKEP 99 PH H HSHPH Q P P Sbjct: 222 PHHADHHPHPHSHPHQQPPPPPP 244
>sp|O82798|ARR4_ARATH Two-component response regulator ARR4 OS=Arabidopsis thaliana GN=ARR4 PE=1 SV=1 Length = 259
Score = 28.9 bits (63), Expect = 8.5 Identities = 19/48 (39%), Positives = 27/48 (56%) Frame = +3
Query: 9 SLSLSLPPPRHNHTLTRTLAPTLTETFEGADSALYTSSCALTPVYIIS 152 S++ SLPPP T++ +P LT + E +D SS L+PV I S Sbjct: 181 SVNSSLPPPSPPLTISPESSPPLTVSTESSD-----SSPPLSPVEIFS 223
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B2CJ80 |
Definition |
tr|B2CJ80|B2CJ80_9HYPO Coatamer subunit protein OS=Epichloe festucae |
Align length |
57 |
Score (bit) |
34.3 |
E-value |
3.2 |
Report |
|