DK959097 |
Clone id |
TST39A01NGRL0003_M06 |
Library |
TST39 |
Length |
587 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_M06. 5' end sequence. |
Accession |
DK959097 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GATTTTCCTGCCACAGAAGCTGTGCGTATTTTTGTGCAGTTTGAGCGTTCTGAGCAAGCA ACCAAAGCTCTGGTGGATTTGGATGGTCGATTTTTTGGGGGAAGGGTGGTGCATGCTGGT TTTTATGATGAAGACAGGTTCAACGTCAATGAGCTGGCTCCTCTTCCAGGAGAAATTCCA GCATTGCAGCCGTCTTGATGTAAGAGTGGTGTTTCATTAAATGTTCAGGCCTTGTTCGAG CTTGATAGTGCGCGCATCGATTTAGCATTCTTTGTCAAATGATCGTTTCTGATCCTTGCT GTTTGTTGCATTTGGCTTGAGAAGAAGTGAAACGTGTCCACATCGTTGCGCAGTTTGCTG CATTTGGCTTGAGAAGAAGTGAAATGTGTCCACATCGTTGCCCAGGTTTCACATTTGGCT TGAGAAGAAGTGAAATGTGTCTTCACATTGTTGCCCAGTTGCTCTGTGTGTGTGAGAAAT GAAGCAGTCTCATCAATGAGTGCACTTGGTTACTGCAAATGTACCCTACGATCTGACAAT TGTAAAAGTACTGGAGACATTTAGCTAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P42698 |
Definition |
sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic OS=Arabidopsis thaliana |
Align length |
60 |
Score (bit) |
95.5 |
E-value |
2.0e-19 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TPI4 |
Definition |
tr|A9TPI4|A9TPI4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
64 |
Score (bit) |
114.0 |
E-value |
4.0e-24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK959097|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0003_M06, 5' (566 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TPI4|A9TPI4_PHYPA Predicted protein OS=Physcomitrella paten... 114 4e-24 tr|A7Q1D9|A7Q1D9_VITVI Chromosome chr10 scaffold_43, whole genom... 108 2e-22 tr|A5C738|A5C738_VITVI Putative uncharacterized protein OS=Vitis... 105 1e-21 tr|B6TI71|B6TI71_MAIZE Splicing factor 45 OS=Zea mays PE=2 SV=1 101 3e-20 tr|B4FLF6|B4FLF6_MAIZE Putative uncharacterized protein OS=Zea m... 101 3e-20 tr|B6T9I0|B6T9I0_MAIZE Splicing factor 45 OS=Zea mays PE=2 SV=1 100 9e-20 tr|Q8L460|Q8L460_ORYSJ cDNA, clone: J100058K04, full insert sequ... 96 1e-18 tr|B8A9B6|B8A9B6_ORYSI Putative uncharacterized protein OS=Oryza... 96 1e-18 tr|A2ZTW9|A2ZTW9_ORYSJ Putative uncharacterized protein OS=Oryza... 96 1e-18 tr|Q0JM88|Q0JM88_ORYSJ Os01g0526100 protein OS=Oryza sativa subs... 91 6e-17 tr|Q0ZAL6|Q0ZAL6_BOMMO Splicing factor 45 OS=Bombyx mori GN=RBM1... 70 1e-10 tr|Q5C102|Q5C102_SCHJA Putative uncharacterized protein OS=Schis... 69 2e-10 tr|Q1HPU9|Q1HPU9_BOMMO RNA binding motif protein 17 OS=Bombyx mo... 68 4e-10 tr|Q4QQX4|Q4QQX4_XENLA LOC733282 protein (Fragment) OS=Xenopus l... 67 5e-10 tr|Q0P3S3|Q0P3S3_XENLA LOC733282 protein OS=Xenopus laevis GN=rb... 67 5e-10 tr|Q6AY02|Q6AY02_RAT RNA binding motif protein 17 OS=Rattus norv... 67 5e-10 tr|A2AP41|A2AP41_MOUSE RNA binding motif protein 17 OS=Mus muscu... 67 5e-10 tr|A7MB77|A7MB77_BOVIN RBM17 protein OS=Bos taurus GN=RBM17 PE=2... 67 5e-10 tr|Q5W009|Q5W009_HUMAN Putative uncharacterized protein OS=Homo ... 67 5e-10 tr|Q4SSV3|Q4SSV3_TETNG Chromosome undetermined SCAF14347, whole ... 66 1e-09 tr|B7PLF8|B7PLF8_IXOSC DNA-damage-repair/toleration protein DRT1... 66 2e-09 tr|Q7ZVN6|Q7ZVN6_DANRE RNA binding motif protein 17 OS=Danio rer... 65 2e-09 tr|Q68EX7|Q68EX7_XENLA MGC84102 protein OS=Xenopus laevis GN=MGC... 65 2e-09 tr|Q3KQE6|Q3KQE6_XENLA MGC84102 protein OS=Xenopus laevis GN=MGC... 65 2e-09 tr|Q172Z4|Q172Z4_AEDAE Putative uncharacterized protein OS=Aedes... 65 2e-09 tr|Q7PVF2|Q7PVF2_ANOGA AGAP009296-PA OS=Anopheles gambiae GN=AGA... 65 3e-09 tr|B0X0A0|B0X0A0_CULQU Splicing factor 45 OS=Culex quinquefascia... 64 4e-09 tr|Q6DIQ0|Q6DIQ0_XENTR RNA binding motif protein 17 OS=Xenopus t... 64 6e-09 tr|B6LG90|B6LG90_BRAFL Putative uncharacterized protein (Fragmen... 64 6e-09 tr|Q8SYI1|Q8SYI1_DROME RE57542p OS=Drosophila melanogaster GN=Sp... 62 2e-08
>tr|A9TPI4|A9TPI4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_171219 PE=4 SV=1 Length = 382
Score = 114 bits (285), Expect = 4e-24 Identities = 55/64 (85%), Positives = 57/64 (89%) Frame = +1
Query: 1 DFPATEAVRIFVQFERSEQATKALVDLDGRFFGGRVVHAGFYDEDRFNVNELAPLPGEIP 180 +FPATEAVRIFVQFERSEQ TKALVDLDGRFFGGRVV A FYDEDRFN NELAP PGE+P Sbjct: 317 NFPATEAVRIFVQFERSEQTTKALVDLDGRFFGGRVVRASFYDEDRFNRNELAPFPGEVP 376
Query: 181 ALQP 192 A P Sbjct: 377 AAIP 380
>tr|A7Q1D9|A7Q1D9_VITVI Chromosome chr10 scaffold_43, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028417001 PE=4 SV=1 Length = 383
Score = 108 bits (270), Expect = 2e-22 Identities = 51/60 (85%), Positives = 55/60 (91%) Frame = +1
Query: 1 DFPATEAVRIFVQFERSEQATKALVDLDGRFFGGRVVHAGFYDEDRFNVNELAPLPGEIP 180 +FP EAVRIFVQFERSE+ TKALVDLDGRFFGGRVVHA FYDEDRF+ NELAP+PGEIP Sbjct: 321 NFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVHATFYDEDRFSKNELAPMPGEIP 380
>tr|A5C738|A5C738_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023439 PE=4 SV=1 Length = 366
Score = 105 bits (263), Expect = 1e-21 Identities = 50/59 (84%), Positives = 54/59 (91%) Frame = +1
Query: 1 DFPATEAVRIFVQFERSEQATKALVDLDGRFFGGRVVHAGFYDEDRFNVNELAPLPGEI 177 +FP EAVRIFVQFERSE+ TKALVDLDGRFFGGRVVHA FYDEDRF+ NELAP+PGEI Sbjct: 304 NFPVDEAVRIFVQFERSEETTKALVDLDGRFFGGRVVHATFYDEDRFSKNELAPMPGEI 362
>tr|B6TI71|B6TI71_MAIZE Splicing factor 45 OS=Zea mays PE=2 SV=1 Length = 382
Score = 101 bits (251), Expect = 3e-20 Identities = 45/60 (75%), Positives = 54/60 (90%) Frame = +1
Query: 1 DFPATEAVRIFVQFERSEQATKALVDLDGRFFGGRVVHAGFYDEDRFNVNELAPLPGEIP 180 DFPA EAVRIF+QFER+E+ATKA++DL GRFFGGRVV A F+DE+RF NELAP+PGE+P Sbjct: 319 DFPADEAVRIFIQFERAEEATKAMIDLQGRFFGGRVVQATFFDEERFGRNELAPMPGEVP 378
>tr|B4FLF6|B4FLF6_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 382
Score = 101 bits (251), Expect = 3e-20 Identities = 45/60 (75%), Positives = 54/60 (90%) Frame = +1
Query: 1 DFPATEAVRIFVQFERSEQATKALVDLDGRFFGGRVVHAGFYDEDRFNVNELAPLPGEIP 180 DFPA EAVRIF+QFER+E+ATKA++DL GRFFGGRVV A F+DE+RF NELAP+PGE+P Sbjct: 319 DFPADEAVRIFIQFERAEEATKAMIDLQGRFFGGRVVQATFFDEERFGRNELAPMPGEVP 378
>tr|B6T9I0|B6T9I0_MAIZE Splicing factor 45 OS=Zea mays PE=2 SV=1 Length = 384
Score = 99.8 bits (247), Expect = 9e-20 Identities = 45/60 (75%), Positives = 54/60 (90%) Frame = +1
Query: 1 DFPATEAVRIFVQFERSEQATKALVDLDGRFFGGRVVHAGFYDEDRFNVNELAPLPGEIP 180 DFP+ EAVRIF+QFER+E+ATKA+VDL GRFFGGRVV A F+DE+RF NELAP+PGE+P Sbjct: 321 DFPSDEAVRIFIQFERAEEATKAMVDLQGRFFGGRVVQATFFDEERFARNELAPMPGEVP 380
>tr|Q8L460|Q8L460_ORYSJ cDNA, clone: J100058K04, full insert sequence OS=Oryza sativa subsp. japonica GN=B1147B04.17 PE=2 SV=1 Length = 368
Score = 95.9 bits (237), Expect = 1e-18 Identities = 42/59 (71%), Positives = 53/59 (89%) Frame = +1
Query: 1 DFPATEAVRIFVQFERSEQATKALVDLDGRFFGGRVVHAGFYDEDRFNVNELAPLPGEI 177 DFPA EAVRIF+ FER+E+ATKA++DL+GRFFGGRVV A F+DE+RF N+LAP+PGE+ Sbjct: 306 DFPAEEAVRIFILFERAEEATKAMIDLEGRFFGGRVVRATFFDEERFGKNQLAPMPGEV 364
>tr|B8A9B6|B8A9B6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_02243 PE=4 SV=1 Length = 368
Score = 95.9 bits (237), Expect = 1e-18 Identities = 42/59 (71%), Positives = 53/59 (89%) Frame = +1
Query: 1 DFPATEAVRIFVQFERSEQATKALVDLDGRFFGGRVVHAGFYDEDRFNVNELAPLPGEI 177 DFPA EAVRIF+ FER+E+ATKA++DL+GRFFGGRVV A F+DE+RF N+LAP+PGE+ Sbjct: 306 DFPAEEAVRIFILFERAEEATKAMIDLEGRFFGGRVVRATFFDEERFGKNQLAPMPGEV 364
>tr|A2ZTW9|A2ZTW9_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_001991 PE=4 SV=1 Length = 108
Score = 95.9 bits (237), Expect = 1e-18 Identities = 42/59 (71%), Positives = 53/59 (89%) Frame = +1
Query: 1 DFPATEAVRIFVQFERSEQATKALVDLDGRFFGGRVVHAGFYDEDRFNVNELAPLPGEI 177 DFPA EAVRIF+ FER+E+ATKA++DL+GRFFGGRVV A F+DE+RF N+LAP+PGE+ Sbjct: 46 DFPAEEAVRIFILFERAEEATKAMIDLEGRFFGGRVVRATFFDEERFGKNQLAPMPGEV 104
>tr|Q0JM88|Q0JM88_ORYSJ Os01g0526100 protein OS=Oryza sativa subsp. japonica GN=Os01g0526100 PE=4 SV=1 Length = 373
Score = 90.5 bits (223), Expect = 6e-17 Identities = 40/56 (71%), Positives = 50/56 (89%) Frame = +1
Query: 1 DFPATEAVRIFVQFERSEQATKALVDLDGRFFGGRVVHAGFYDEDRFNVNELAPLP 168 DFPA EAVRIF+ FER+E+ATKA++DL+GRFFGGRVV A F+DE+RF N+LAP+P Sbjct: 306 DFPAEEAVRIFILFERAEEATKAMIDLEGRFFGGRVVRATFFDEERFGKNQLAPMP 361
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