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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK959014
Clone id TST39A01NGRL0003_I15
Library
Length 643
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_I15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTTACTCTAGCGCACTACAATATCTATAAAGGATGTTATGTCCAGCTTATCCAAATCCC
ATCAAGAAGTCAAGGTTTTGATGACAATGAAACTGAAATTGCATTATGGTGAGAGAAGTA
TGCTCGTTGCTGGTCTGAAATCCAGACACACATGCACTTTTACGAATATTTTGACAAAGA
AATTCTTTACGGATTCTTGAAAGATTTGGCACTTCCTCAAAACATGTCCTTTGACCAGCA
TGTGCATGTGGCCTTGTCTGGACTAAAAGCGGTGATAAGCCTTGAAGCCCAAACTGTTAG
CAACAAAAACTGTTGCCCTTCTTTTAATGAACTGGACAAAGGACTCAAATCTGCTATTAG
ATCAGATGAAGAAGCGATTAACAGAGGAAACCCTTTTCTCATCCATTCTGATGTCTCGTA
TCTCACATTCGAGGGCTGGCATAAGACCCAAGAGAGCCACTGGAGAATAGCATTCAAGTT
TCTGGATTCAGAAAGTGGAGTTGTGCTTTTATATGGTGATTCATCATATCTACACGAGAG
CATTGCAGGGTGGTTTACAGGAGTTTTAGTTGAGCAAACAGCTCTGCTCATTCAAGCTCC
TATTACACCATTGATTGATCTCAGTGGTGCGAGCGGGATAATA
■■Homology search results ■■ -
sp_hit_id Q7X2N3
Definition sp|Q7X2N3|SYV_SPHEL Valyl-tRNA synthetase OS=Sphingomonas elodea
Align length 46
Score (bit) 31.6
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959014|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_I15, 5'
         (643 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7X2N3|SYV_SPHEL Valyl-tRNA synthetase OS=Sphingomonas elodea...    32   3.7  
sp|Q8WXD9|CSKI1_HUMAN Caskin-1 OS=Homo sapiens GN=CASKIN1 PE=1 SV=1    32   3.7  
sp|Q37894|VG13_BPB03 Morphogenesis protein 1 OS=Bacillus phage B...    30   8.2  

>sp|Q7X2N3|SYV_SPHEL Valyl-tRNA synthetase OS=Sphingomonas elodea
           GN=valS PE=3 SV=1
          Length = 811

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = -1

Query: 508 KHNSTF*IQKLECYSPVALLGLMPALECEIRDIRMDEKRVSSVNRF 371
           K N+   +  ++ Y   AL   M A+E + RDI+MDEKR+     F
Sbjct: 547 KGNTVDPLGMIDKYGADALRFFMAAMESQGRDIKMDEKRLEGYRNF 592


>sp|Q8WXD9|CSKI1_HUMAN Caskin-1 OS=Homo sapiens GN=CASKIN1 PE=1 SV=1
          Length = 1431

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 588 SRAVCSTKTPVNHPAMLSCRYDESPYKSTTPLSESRNLNAILQWLS 451
           S  V  ++ PV H   +   Y E P K   P SE ++  A+ QWL+
Sbjct: 440 SAGVARSQPPVAHAGQV---YGEQPPKKLEPASEGKSSEAVSQWLT 482


>sp|Q37894|VG13_BPB03 Morphogenesis protein 1 OS=Bacillus phage B103
           GN=13 PE=3 SV=1
          Length = 365

 Score = 30.4 bits (67), Expect = 8.2
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
 Frame = -2

Query: 567 KTPVNHPAMLSC--RYDESPYKSTTPLSESRNLNAILQWLSWVLCQPSNVRYETSEWMRK 394
           K P   P   +C  R DES Y + T   E    +  +++++WV     N+ Y   + ++K
Sbjct: 202 KYPYYAPCDCTCVWRGDESAYLAWTSDKEVMCADGTVRYITWVCVHDENLLYNVGKKLKK 261

Query: 393 G 391
           G
Sbjct: 262 G 262
tr_hit_id Q3IRI1
Definition tr|Q3IRI1|Q3IRI1_NATPD Putative uncharacterized protein OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)
Align length 70
Score (bit) 35.8
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK959014|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_I15, 5'
         (643 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3IRI1|Q3IRI1_NATPD Putative uncharacterized protein OS=Natro...    36   2.3  
tr|A6REP5|A6REP5_AJECN Predicted protein OS=Ajellomyces capsulat...    35   3.0  
tr|A7GWW5|A7GWW5_CAMC5 General glycosylation pathway protein OS=...    35   3.9  
tr|A2FGJ9|A2FGJ9_TRIVA Putative uncharacterized protein OS=Trich...    35   5.1  
tr|B0DKF7|B0DKF7_LACBS Protein disulfide isomerase OS=Laccaria b...    35   5.1  
tr|A5DN45|A5DN45_PICGU Putative uncharacterized protein OS=Pichi...    34   6.7  
tr|Q23RG1|Q23RG1_TETTH Putative uncharacterized protein OS=Tetra...    34   8.7  
tr|B1RAJ9|B1RAJ9_CLOPE CapA domain protein OS=Clostridium perfri...    34   8.8  
tr|B1BWV1|B1BWV1_CLOPE CapA domain protein OS=Clostridium perfri...    34   8.8  
tr|A8TDA7|A8TDA7_METVO Fibrillarin-like protein OS=Methanococcus...    34   8.8  

>tr|Q3IRI1|Q3IRI1_NATPD Putative uncharacterized protein
           OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)
           GN=NP2342A PE=4 SV=1
          Length = 601

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 23/70 (32%), Positives = 36/70 (51%)
 Frame = +2

Query: 407 SDVSYLTFEGWHKTQESHWRIAFKFLDSESGVVLLYGDSSYLHESIAGWFTGVLVEQTAL 586
           +D +Y+T E W + QE H  +  ++ D++SG  +  G        + GWF+G  V QTA 
Sbjct: 532 TDDNYITEEEWKEQQERHEELIEQYEDAQSGGGIDLG-------GLGGWFSG--VGQTAA 582

Query: 587 LIQAPITPLI 616
              A +  LI
Sbjct: 583 AAGAGVLALI 592


>tr|A6REP5|A6REP5_AJECN Predicted protein OS=Ajellomyces capsulata
           (strain NAm1 / WU24) GN=HCAG_08110 PE=4 SV=1
          Length = 533

 Score = 35.4 bits (80), Expect = 3.0
 Identities = 39/145 (26%), Positives = 66/145 (45%), Gaps = 15/145 (10%)
 Frame = +2

Query: 248 VALSGLKAVISLEAQTVSNKNCCPSFNELDKGLKSAIRS-------------DEEAINRG 388
           V +S L+A++S   +  +     P+FN  D+G+K A+R+             D+E +NR 
Sbjct: 231 VRVSQLEAILSKFKEEYN-----PNFN--DEGVKRAVRAWEDYAARGDTDSDDDETLNRD 283

Query: 389 NPFLIHSDV--SYLTFEGWHKTQESHWRIAFKFLDSESGVVLLYGDSSYLHESIAGWFTG 562
              +   D   S + ++ W   Q           D ES + LLY  ++YL +S+  +F  
Sbjct: 284 LDEICKPDSENSGIDWDHWENEQ-----------DVESDIGLLYKVAAYLPDSLINYFED 332

Query: 563 VLVEQTALLIQAPITPLIDLSGASG 637
            +++  + LI   I  L D SG  G
Sbjct: 333 KVLQLRSFLISNGI--LADNSGDLG 355


>tr|A7GWW5|A7GWW5_CAMC5 General glycosylation pathway protein
           OS=Campylobacter curvus (strain 525.92) GN=Ccur92_04030
           PE=4 SV=1
          Length = 708

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = +2

Query: 344 LKSAIRSDEEAINRGNPFLIHSDVSYLTFEG 436
           + SAI  DE  IN GN F++ SDVS L++ G
Sbjct: 593 IASAIAQDERGINLGNGFVLSSDVSTLSYNG 623


>tr|A2FGJ9|A2FGJ9_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_114760 PE=4 SV=1
          Length = 2035

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 3/110 (2%)
 Frame = +2

Query: 158 FYEYFDKEILYGFLKDLALP---QNMSFDQHVHVALSGLKAVISLEAQTVSNKNCCPSFN 328
           +Y+YFD   LYGF+K+   P   QN S +Q  ++ L+ L  ++         +N  P+ N
Sbjct: 248 YYDYFDVNGLYGFMKEKKFPIRIQNESQEQ-TNIFLAVLNRLL---------ENFAPTLN 297

Query: 329 ELDKGLKSAIRSDEEAINRGNPFLIHSDVSYLTFEGWHKTQESHWRIAFK 478
           +     +S + S        NP   H+++    F+ + +   ++++I  K
Sbjct: 298 QAISTFESQMAS--------NPSASHNEIISQIFDSFPRQANTYFQIMEK 339


>tr|B0DKF7|B0DKF7_LACBS Protein disulfide isomerase OS=Laccaria
           bicolor (strain S238N-H82) GN=LBPDI1 PE=4 SV=1
          Length = 592

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
 Frame = +2

Query: 326 NELDKGLKSAIRSDEEAINRGNPFLIHSDVSYLTFEGWHKTQESHWR-IAFKFLDSESGV 502
           +ELD G+   IR D  A+  G P  I+S  S     G++      W  +A K  DS++  
Sbjct: 297 SELDTGILDKIRKDA-AVLLGTP-TIYSSSSPDLLLGYNIPSSVSWSLVALKDHDSQTPS 354

Query: 503 VLLYGDSSYLHESIAGWFTGVLVEQTALLIQ--------APITPLI 616
            + +G S+  HE I  W     +  T  L Q        AP  PL+
Sbjct: 355 SIFHGSSTSTHEKINVWLLSHRLPTTLELTQDTFQAVMNAPHAPLV 400


>tr|A5DN45|A5DN45_PICGU Putative uncharacterized protein OS=Pichia
           guilliermondii GN=PGUG_04696 PE=4 SV=2
          Length = 217

 Score = 34.3 bits (77), Expect = 6.7
 Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
 Frame = +2

Query: 212 LPQNMSFDQHVHVALSGLKAVISLEAQ---TVSNKNCCPSFNELDKGLKSAIRSDEEAIN 382
           LP N  FD+HV   LS  K VI+       T       P   E   GL + +  DE   N
Sbjct: 25  LPTNYKFDKHVLQELS--KQVIANHPDGNATAIMNELAPRIKEAYPGLINDLNYDEWVYN 82

Query: 383 R-----GNPFLIHSDVS-YLTFEGWHKTQESHWRIAF 475
                 G  F++H+ +S YL F G     E H  + F
Sbjct: 83  NAGGAMGTMFILHASISEYLIFFGTAVGTEGHTGVHF 119


>tr|Q23RG1|Q23RG1_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00388280 PE=4
            SV=1
          Length = 1957

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -3

Query: 287  LQGLSPLLVQTRPHAHAGQRTCFEEVPNLSR 195
            LQG+SP  +Q +P +++GQ+ C  E  N+S+
Sbjct: 1819 LQGISPSQIQCKPSSNSGQKRCINENNNISQ 1849


>tr|B1RAJ9|B1RAJ9_CLOPE CapA domain protein OS=Clostridium
           perfringens B str. ATCC 3626 GN=AC1_2064 PE=4 SV=1
          Length = 404

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = +2

Query: 320 SFNELDKGLKSAIRSDEEAINRGNPFLI---HSDVSYLTFEGWHKTQESHWRIAFKFLDS 490
           S+N+LDKGL+      EE  N G  F++   H  V Y       KT+ S +++      +
Sbjct: 221 SYNKLDKGLEEMKALVEEMKNEGAEFIVFGMHWGVEY-------KTEPSKYQVKIAEALN 273

Query: 491 ESGVVLLYGDSSYLHESI 544
           E GV L+ G + ++ + I
Sbjct: 274 EYGVDLILGSNPHVVQPI 291


>tr|B1BWV1|B1BWV1_CLOPE CapA domain protein OS=Clostridium
           perfringens E str. JGS1987 GN=AC3_2141 PE=4 SV=1
          Length = 404

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = +2

Query: 320 SFNELDKGLKSAIRSDEEAINRGNPFLI---HSDVSYLTFEGWHKTQESHWRIAFKFLDS 490
           S+N+LDKGL+      EE  N G  F++   H  V Y       KT+ S +++      +
Sbjct: 221 SYNKLDKGLEEMKALVEEMKNEGAEFIVFGMHWGVEY-------KTEPSKYQVKIAEALN 273

Query: 491 ESGVVLLYGDSSYLHESI 544
           E GV L+ G + ++ + I
Sbjct: 274 EYGVDLILGSNPHVVQPI 291


>tr|A8TDA7|A8TDA7_METVO Fibrillarin-like protein OS=Methanococcus
           voltae A3 GN=MvolDRAFT_0061 PE=4 SV=1
          Length = 511

 Score = 33.9 bits (76), Expect = 8.8
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 260 GLKAVISLEAQTVSNKNCCPSFNELDKGLKSAIRSDEEAINRGNPFLIHSDVSYLTFE-- 433
           GL  V+S+  + +SN N C            A ++  EAI +GN FL ++D +Y+  E  
Sbjct: 337 GLPRVLSIVKEELSNLNIC-----------LATKTQLEAIAKGNKFLTYNDKTYIYPETV 385

Query: 434 GWHKTQESHW 463
           G +   ++HW
Sbjct: 386 GNYFMGDAHW 395