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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958993
Clone id TST39A01NGRL0003_H17
Library
Length 639
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_H17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTCTTCCAGTAGACACCTAGAGCAGCTGGTTTGCTCTAAGGTTGCACGACAGGTTGATGC
ATCTTTTGAGGACAGTCAAGAGATGCATGTGGCTGACGCGCCTTGTCAGTCAGAGATGCC
TATTGCCAGGGATATATATGTTGATGCATGCTCCATAGAGCTAGCAGGGCCCGCTAGCAT
TGCATCGGCATTCAGTGGTCTCATGTATGAGATGCTGATCTTGAGACCAGATATCGCAGC
TGTAGTGGGAGCATTTGCAGTTGGGGTTGTCAGTCGTTTGTTGACTGATGATGGCATAGT
GCACGAGGGAGATATGCAGGTATTGTGTACATACTTGCAGTACGTGTGCGGTACGTCTGG
TGGTGTATGGACTTACACGGGAGCAGGACAGCCGGATGCACACGATCATAGCCAGCCAGT
GAGCATCGGTTGAGAGCGGTTTTCTCTCACCTTTTGTAGTCTTAACACCTTAAGGTTTAT
GCGTATCATTTATGCGATCTAGGTAGAGATTGCGGGTTGCACTCAGCATTTGTGTGCGGT
GTTCTCTGCAGGTGGGAGATTTGTGCGTGTGTATGCATCGATACCGCACAGTGTGGGCTT
GGTGATTCGCTCACGGTTTGACAGGCGTACAATTATCTT
■■Homology search results ■■ -
sp_hit_id O14014
Definition sp|O14014|RGA3_SCHPO Probable Rho-type GTPase-activating protein 3 OS=Schizosaccharomyces pombe
Align length 29
Score (bit) 32.3
E-value 2.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958993|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_H17, 5'
         (639 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14014|RGA3_SCHPO Probable Rho-type GTPase-activating protein...    32   2.1  
sp|Q9HCE3|ZN532_HUMAN Zinc finger protein 532 OS=Homo sapiens GN...    31   6.2  

>sp|O14014|RGA3_SCHPO Probable Rho-type GTPase-activating protein 3
           OS=Schizosaccharomyces pombe GN=rga3 PE=2 SV=1
          Length = 969

 Score = 32.3 bits (72), Expect = 2.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 306 REICRYCVHTCSTCAVRLVVYGLTREQDS 392
           R +C  C HTC+ C +R+  Y L    DS
Sbjct: 68  RPVCSSCAHTCTACRMRIKDYALMSGYDS 96


>sp|Q9HCE3|ZN532_HUMAN Zinc finger protein 532 OS=Homo sapiens
           GN=ZNF532 PE=1 SV=2
          Length = 1301

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 8/44 (18%)
 Frame = -2

Query: 431 NRCSLAGYDRVH--------PAVLLPCKSIHHQTYRTRTASMYT 324
           N+CS A + R+H        P     C+S+H QT+ T+    YT
Sbjct: 794 NQCSYASHQRIHQHKSPYTCPECGAICRSVHFQTHVTKNCLHYT 837
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958993|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_H17, 5'
         (639 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******