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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958906
Clone id TST39A01NGRL0003_D24
Library
Length 649
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_D24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CATTGTGAGCTGCAGCTCTGCAGCCCCAGCGCACAAGGGCAATGGATTCCCAGATACCAC
CCCTTGGATCCCAACCAGAGGAAGAGTTTGTTGTCTCTTAACCAATGTATACTCCCTCGC
CTTATTACCAATTTAGTTCATCCACCCCAGCTTCGATGGCATATGCAATGCCTTCCCATG
GATTCAGTGCAATGCTTACTTCTTCATCTCCAAGTCCTCCTATGTTGTTTGGGCCACCAC
CCATTCGTATCATGCCCCGGGTTGCATCCCCTAGTGAAAACGCATTTAAAAGCCCAATAA
CTGGCAAGCTTCTATTTGAAGAGTCTATGCAGGTAAACTCCGCAAAGCCACGTAAAAATG
CTCGCAGCCAAAACCAATCCGCCAAGGAGGGAACAGGTGATGGGGATGGACCTGCTCCAA
AACGAGCCAAAACTAGCAAGGCAAAAGCCAAGGTTAAAGAAGAGGATGACGACGATGCAG
ATAAAGTGATGTGGAAGGATTTTTGGGTAGAGCACTTGATACACATTAGAGGAGGGATGA
ATGATGAGTTTAACAAAATGCCAAAGCAAGGAATTGATCTTTGGGGTAAGGTGGCGACAA
AGCTGGCATCCATGTTTGCTAATTGCGACAAGGATGGGCAGGCATGCAG
■■Homology search results ■■ -
sp_hit_id Q9HDZ2
Definition sp|Q9HDZ2|CWH43_SCHPO Protein cwh43 OS=Schizosaccharomyces pombe
Align length 72
Score (bit) 32.7
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958906|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_D24, 5'
         (649 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9HDZ2|CWH43_SCHPO Protein cwh43 OS=Schizosaccharomyces pombe...    33   1.7  
sp|Q1RIL0|AMPG1_RICBR Putative transporter ampG 1 OS=Rickettsia ...    32   3.7  
sp|Q6UXB0|F131A_HUMAN Protein FAM131A OS=Homo sapiens GN=FAM131A...    32   3.8  
sp|Q11KP9|KATG_MESSB Catalase-peroxidase OS=Mesorhizobium sp. (s...    31   4.9  
sp|Q95JW2|CTL5_MACFA Choline transporter-like protein 5 OS=Macac...    31   6.4  
sp|A5IGU1|QUEF_LEGPC NADPH-dependent 7-cyano-7-deazaguanine redu...    31   6.4  
sp|Q8R4Y4|STAB1_MOUSE Stabilin-1 OS=Mus musculus GN=Stab1 PE=2 SV=1    30   8.3  

>sp|Q9HDZ2|CWH43_SCHPO Protein cwh43 OS=Schizosaccharomyces pombe
           GN=cwh43 PE=2 SV=2
          Length = 971

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 14/72 (19%)
 Frame = -3

Query: 521 YQVLYPKILPHHFICIVVIL--------------FFNLGFCLASFGSFWSRSIPITCSLL 384
           Y +  P+  PH  + IVV +              F  +GF LA FGS++       CS L
Sbjct: 501 YPIKGPQPYPHGAVSIVVSICAVLVAPYLYQSGAFMLIGFVLACFGSYFMYINHGWCSYL 560

Query: 383 GGLVLAASIFTW 348
           GGL+  + +  +
Sbjct: 561 GGLIFTSYVLIY 572


>sp|Q1RIL0|AMPG1_RICBR Putative transporter ampG 1 OS=Rickettsia
           bellii (strain RML369-C) GN=ampG1 PE=3 SV=1
          Length = 410

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
 Frame = -3

Query: 587 TPKINSLLWHFVKLIIHPSSNVYQVLYPKI------LPHHFICIVV---ILFFNL-GFCL 438
           T   N  ++ F+K I+ P  ++  ++   I      LP +FI +++   +L  N   F +
Sbjct: 203 TTNNNDDIFAFIKNILKPIGSISFIILILIFLILYRLPDNFINVMINPFLLHLNYDAFEI 262

Query: 437 ASFGSFWSRSIPITCSLLGGLVL 369
           AS G FW     I   LLGG ++
Sbjct: 263 ASVGKFWGVMGAIVGGLLGGFIM 285


>sp|Q6UXB0|F131A_HUMAN Protein FAM131A OS=Homo sapiens GN=FAM131A
           PE=2 SV=1
          Length = 335

 Score = 31.6 bits (70), Expect = 3.8
 Identities = 22/54 (40%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = +1

Query: 4   CELQLCSPS---AQGQWIPRYHP---LDPNQRKSLLSLNQCILPRLITNLVHPP 147
           CE  L SP    AQ    P  HP   +DPN      SL+ C L    T L+HPP
Sbjct: 21  CEYMLGSPLSSLAQVNLSPFSHPKVHMDPNYCHPSTSLHLCSLAWSFTRLLHPP 74


>sp|Q11KP9|KATG_MESSB Catalase-peroxidase OS=Mesorhizobium sp.
           (strain BNC1) GN=katG PE=3 SV=1
          Length = 726

 Score = 31.2 bits (69), Expect = 4.9
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = -3

Query: 293 AFKCVFTRGCNPGHDTNGWWPKQ 225
           A KC FT G   GH    WWP+Q
Sbjct: 9   AGKCPFTGGGRRGHRNRDWWPEQ 31


>sp|Q95JW2|CTL5_MACFA Choline transporter-like protein 5 OS=Macaca
           fascicularis GN=SLC44A5 PE=2 SV=1
          Length = 717

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
 Frame = -3

Query: 629 VAISKHGCQLCRHLTPKINSLLWHFVKLIIHPSSNVYQVLYPKILPHHFICIVVILFFNL 450
           + I+ +G   CR      N L+ + +K+ +      + +   KIL    I ++  LFF  
Sbjct: 575 IMIAIYGRNFCRSAKDAFNLLMRNVLKVAVTDEVTYFVLFLGKILVAGSIGVLAFLFFTQ 634

Query: 449 GFCL-----ASFGSFWSRSIPITCSLLGGLVLAASIFT 351
              +     AS   +W   +P+   +LG  ++A   F+
Sbjct: 635 RLPVIAQGPASLNYYW---VPLLTVILGSYLIAHGFFS 669


>sp|A5IGU1|QUEF_LEGPC NADPH-dependent 7-cyano-7-deazaguanine
           reductase OS=Legionella pneumophila (strain Corby)
           GN=queF PE=3 SV=1
          Length = 285

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = +2

Query: 104 NVYSLALLPI*FIHPSFDGICNAFPWIQCNAYF----FISKSSYVVWATTHS 247
           NVY L+ +P   I+ +FDG+C     I+C+ Y     F+S SS +V    +S
Sbjct: 133 NVYPLSDIPNQTIYAAFDGVCLDKLDIECSVYHVMPDFLSTSSELVEEVLYS 184


>sp|Q8R4Y4|STAB1_MOUSE Stabilin-1 OS=Mus musculus GN=Stab1 PE=2 SV=1
          Length = 2571

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 13/61 (21%)
 Frame = -3

Query: 284  CVFTRG-----CNPGHDTNGWWPKQHRRTWR*RSKHCTESMG--------RHCICHRSWG 144
            CV   G     C+ G + NG+  K+     R     C+E+           HCICH+ W 
Sbjct: 838  CVIQEGVARCVCHDGFEGNGFSCKRSNPCSRPDRGGCSENAECVPGDLGTHHCICHKGWS 897

Query: 143  G 141
            G
Sbjct: 898  G 898
tr_hit_id A9S4Q5
Definition tr|A9S4Q5|A9S4Q5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 53
Score (bit) 37.7
E-value 0.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958906|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_D24, 5'
         (649 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S4Q5|A9S4Q5_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.60 
tr|A3VV41|A3VV41_9PROT Ammonium transporter OS=Parvularcula berm...    37   0.79 
tr|A8P296|A8P296_COPC7 Putative uncharacterized protein OS=Copri...    35   3.0  
tr|B6BQ40|B6BQ40_9RICK Ammonium transporter OS=Candidatus Pelagi...    35   5.1  
tr|Q6C6N9|Q6C6N9_YARLI YALI0E07788p OS=Yarrowia lipolytica GN=YA...    35   5.1  
tr|Q4FMF4|Q4FMF4_PELUB Ammonium transporter OS=Pelagibacter ubiq...    34   8.7  
tr|B2IG71|B2IG71_BEII9 Flagellar biosynthesis protein FliR OS=Be...    34   8.7  
tr|Q1V2L4|Q1V2L4_9RICK Ammonium transporter OS=Candidatus Pelagi...    34   8.7  

>tr|A9S4Q5|A9S4Q5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_74560 PE=4 SV=1
          Length = 661

 Score = 37.7 bits (86), Expect = 0.60
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 492 WKDFWVEHLIHIRGGMNDEFNK-MPKQGIDLWGKVATKLASMFANCDKDGQAC 647
           W +  VE LI +RG M++EF +   KQG++ W K+  ++  +     K   AC
Sbjct: 531 WTNCEVEALIALRGEMHEEFERNKQKQGVNTWNKLHARMLGVCKGFRKSANAC 583


>tr|A3VV41|A3VV41_9PROT Ammonium transporter OS=Parvularcula
           bermudensis HTCC2503 GN=PB2503_13104 PE=4 SV=1
          Length = 443

 Score = 37.4 bits (85), Expect = 0.79
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 473 VVILFFNLGFCLASFGSFWSRSIPITCSLLGGLVLAASIFTWLCGVYL 330
           +V++F + GFC+   GS  S+++   C     L   A +  WLCG  L
Sbjct: 48  MVVMFMSAGFCMLEAGSVRSKNVAAICLKNISLYAIAGLMVWLCGYNL 95


>tr|A8P296|A8P296_COPC7 Putative uncharacterized protein
           OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC
           9003) GN=CC1G_04711 PE=4 SV=1
          Length = 638

 Score = 35.4 bits (80), Expect = 3.0
 Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 24  PQRTRAMDSQIPPLGSQPEEEFVVS*PMYTPSPY--YQFSSSTPASMAYAMPSHGFSAM 194
           P +T A    +PP  + P      S PM+TPS Y  Y + S  PA+M Y  P+H  S M
Sbjct: 323 PPQTAAPLPHVPP--ATPAYATDTSAPMHTPSAYPPYPYLSPPPATMNYQPPAHVGSTM 379


>tr|B6BQ40|B6BQ40_9RICK Ammonium transporter OS=Candidatus
           Pelagibacter sp. HTCC7211 GN=amtB PE=4 SV=1
          Length = 433

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -3

Query: 530 SNVYQVLYPKILPHHFICIVVILFFNLGFCLASFGSFWSRSIPITCSLLGGLVLAASIFT 351
           S   Q ++  +L    IC  +++F   GF +   G   S+S+ + C+   GL   A I  
Sbjct: 32  SGEVQAIFNSLL--FLICGFLVMFMAAGFAMLESGMVTSKSVSVICAKNIGLYSIAGIMF 89

Query: 350 WLCGVYL 330
           WL G  L
Sbjct: 90  WLFGYNL 96


>tr|Q6C6N9|Q6C6N9_YARLI YALI0E07788p OS=Yarrowia lipolytica
           GN=YALI0E07788g PE=4 SV=1
          Length = 333

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 14/70 (20%)
 Frame = -3

Query: 452 LGFCLASFGSFWSRSIP--------------ITCSLLGGLVLAASIFTWLCGVYLHRLFK 315
           +GF +A F S W+  +               +  S+   L L AS   +LC V+L  L K
Sbjct: 192 MGFYVAVFCSLWATGVAGVRDMEEWDFDYNSVGLSIAISLFLVASTLQYLCHVHLSSLIK 251

Query: 314 *KLASYWAFK 285
             L ++W FK
Sbjct: 252 YSLPTFWPFK 261


>tr|Q4FMF4|Q4FMF4_PELUB Ammonium transporter OS=Pelagibacter ubique
           GN=amtB PE=4 SV=1
          Length = 433

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 482 ICIVVILFFNLGFCLASFGSFWSRSIPITCSLLGGLVLAASIFTWLCGVYL 330
           IC  +++F   GF +   G   S+S+ + C+   GL   + I  WL G  L
Sbjct: 46  ICGFLVMFMAAGFAMLESGMVTSKSVSVICAKNIGLYAISGIMFWLVGYNL 96


>tr|B2IG71|B2IG71_BEII9 Flagellar biosynthesis protein FliR
           OS=Beijerinckia indica subsp. indica (strain ATCC 9039 /
           DSM 1715 / NCIB 8712) GN=Bind_3589 PE=4 SV=1
          Length = 251

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 17/50 (34%), Positives = 24/50 (48%)
 Frame = -3

Query: 494 PHHFICIVVILFFNLGFCLASFGSFWSRSIPITCSLLGGLVLAASIFTWL 345
           P H +  V ILF  +GFC+     F S  IP+   L   L L  ++  +L
Sbjct: 5   PSHLVLFVTILFCRIGFCVMLLPGFSSPRIPLKVRLALALALTLTLTPFL 54


>tr|Q1V2L4|Q1V2L4_9RICK Ammonium transporter OS=Candidatus
           Pelagibacter ubique HTCC1002 GN=PU1002_02316 PE=4 SV=1
          Length = 433

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -3

Query: 482 ICIVVILFFNLGFCLASFGSFWSRSIPITCSLLGGLVLAASIFTWLCGVYL 330
           IC  +++F   GF +   G   S+S+ + C+   GL   + I  WL G  L
Sbjct: 46  ICGFLVMFMAAGFAMLESGMVTSKSVSVICAKNIGLYAISGIMFWLVGYNL 96