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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958897
Clone id TST39A01NGRL0003_D15
Library
Length 667
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0003_D15. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
GAACTCATCCTCATCAGCCTGCCTTTCTTCGCCTTGGTTTTCATCGTGATAGGCTTGATC
ATCTTCGGCTTCTCTATCAGAATCCACTGCTTTCTCGTCGGATTCTCTCTTAATTACTTA
GCCTTGGGTTGCAAGCGACTCGTGACCCTATTTCCAGTCTGAGTCCGGCTGCTGCAGATT
TCAAACAACAGCTGGAAATACAAGCTTTTATGGATCGACTTCTTGGTTTCATTAAGGATC
CACTTTATGCCAAGCATTGTCACCGATTTAGCTCATAGCCATGGATAGGGCTGAATATCT
GCAAGTGTTGAATGCATTTGATATGCTTGTTGAAATTTTGCAAGAACCACTTGAGAAGCT
ATAGGAGATTCTACTGCTTATGAAGTTCCAGGTGGTTGACTTGCGTAGGGCGTCCATGAG
GAAGGAGTATCCGTGCAGCGAGTGAACCTTTTCGAGCAACCTTATTTTCGAGATTCGAGC
TGTATATTTGCATGTTCTGAGGGCCGTGAAAAGCTTGGGCGAACTGGCTGCAGTCTTTTC
TCGGCAATTGAAGTTGCACTTGTCCCCTTTCTCAACAGCATAGTCAGGTTGGTTGTCCAG
CTATCCTAAGGTGTCGCAGGTGGCCTCATCTTGCCTACTGAAAAGTTTTTGCAGTCACTG
GGATTCG
■■Homology search results ■■ -
sp_hit_id Q32RP7
Definition sp|Q32RP7|RR7_ZYGCR 30S ribosomal protein S7, chloroplastic OS=Zygnema circumcarinatum
Align length 40
Score (bit) 37.7
E-value 0.055
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958897|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_D15, 5'
         (667 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q32RP7|RR7_ZYGCR 30S ribosomal protein S7, chloroplastic OS=Z...    38   0.055
sp|Q32RW0|RR7_STAPU 30S ribosomal protein S7, chloroplastic OS=S...    34   0.61 
sp|P23692|YL15_ADE41 Uncharacterized 12.4 kDa protein in 33 kDa ...    34   0.80 
sp|Q6BZF6|SSN2_DEBHA Mediator of RNA polymerase II transcription...    34   0.80 
sp|P97751|VIPR1_MOUSE Vasoactive intestinal polypeptide receptor...    28   0.99 
sp|Q71L24|RR7_METGY 30S ribosomal protein S7, chloroplastic OS=M...    33   1.4  
sp|B1VKJ4|RR7_CRYJA 30S ribosomal protein S7, chloroplastic OS=C...    33   1.4  
sp|Q1RMM5|NP1L5_BOVIN Nucleosome assembly protein 1-like 5 OS=Bo...    33   1.4  
sp|P42342|RR7_SPIMX 30S ribosomal protein S7, chloroplastic OS=S...    33   1.8  
sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus no...    33   1.8  
sp|P30083|VIPR1_RAT Vasoactive intestinal polypeptide receptor 1...    27   2.1  
sp|P09263|UL47_VZVD Tegument protein UL47 homolog OS=Varicella-z...    32   2.3  
sp|Q1E1Q5|NOP58_COCIM Nucleolar protein NOP58 OS=Coccidioides im...    32   2.3  
sp|Q01538|MYT1_HUMAN Myelin transcription factor 1 OS=Homo sapie...    32   2.3  
sp|Q54VF1|DDX56_DICDI Probable ATP-dependent RNA helicase ddx56 ...    32   2.3  
sp|Q6RH25|RR7_HELSJ 30S ribosomal protein S7, plastid OS=Helicos...    32   3.0  
sp|Q5TCY1|TTBK1_HUMAN Tau-tubulin kinase 1 OS=Homo sapiens GN=TT...    32   3.0  
sp|Q54LV0|SMC4_DICDI Structural maintenance of chromosomes prote...    32   3.0  
sp|Q9C6H3|SINL2_ARATH Putative E3 ubiquitin-protein ligase SINA-...    32   3.0  
sp|A8WTM7|NOC2L_CAEBR Nucleolar complex protein 2 homolog OS=Cae...    32   3.0  
sp|Q869L3|MDN1_DICDI Midasin OS=Dictyostelium discoideum GN=mdn1...    32   3.0  
sp|A3GG51|MAK5_PICST ATP-dependent RNA helicase MAK5 OS=Pichia s...    32   3.0  
sp|Q0UTL2|RT106_PHANO Histone chaperone RTT106 OS=Phaeosphaeria ...    32   4.0  
sp|P09405|NUCL_MOUSE Nucleolin OS=Mus musculus GN=Ncl PE=1 SV=2        32   4.0  
sp|P25980|UBF1B_XENLA Nucleolar transcription factor 1-B OS=Xeno...    31   5.2  
sp|P53997|SET_DROME Protein SET OS=Drosophila melanogaster GN=Se...    31   5.2  
sp|P0A0J9|QACA_STAAU Antiseptic resistance protein OS=Staphyloco...    31   5.2  
sp|P0A0J8|QACA_STAAM Antiseptic resistance protein OS=Staphyloco...    31   5.2  
sp|Q8CFC2|MYT1_MOUSE Myelin transcription factor 1 OS=Mus muscul...    31   5.2  
sp|P13816|GARP_PLAFF Glutamic acid-rich protein OS=Plasmodium fa...    31   5.2  

>sp|Q32RP7|RR7_ZYGCR 30S ribosomal protein S7, chloroplastic
           OS=Zygnema circumcarinatum GN=rps7 PE=3 SV=1
          Length = 155

 Score = 37.7 bits (86), Expect = 0.055
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = -3

Query: 254 LGIKWILNETKKSIHKSLYFQLLFEICSSRTQTGNRVTSR 135
           L I+WILN  KK   +S+ F+L  EI  +  QTGN +  R
Sbjct: 99  LAIRWILNAAKKRNGRSMAFKLSSEIIDAARQTGNAIRKR 138


>sp|Q32RW0|RR7_STAPU 30S ribosomal protein S7, chloroplastic
           OS=Staurastrum punctulatum GN=rps7 PE=3 SV=1
          Length = 155

 Score = 34.3 bits (77), Expect = 0.61
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 254 LGIKWILNETKKSIHKSLYFQLLFEICSSRTQTGNRVTSR 135
           L ++WIL   +K   +S+ F+L +E+  +  QTGN +  R
Sbjct: 99  LAVRWILAAARKRPGRSMAFKLSYELMDAARQTGNAIRKR 138


>sp|P23692|YL15_ADE41 Uncharacterized 12.4 kDa protein in 33 kDa
           protein region OS=Human adenovirus F serotype 41 PE=4
           SV=1
          Length = 122

 Score = 33.9 bits (76), Expect = 0.80
 Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 479 AVYLHVLRAVKSLGELAAVFSRQL-KLHLSPFSTA*SGWLSSYPKVSQVASSCLLKSFCS 655
           A  L ++ +  SLG L++  S +L +L +S  S   S WLSS    S    SC   SFC 
Sbjct: 38  AAALAMISSSSSLGGLSSSSSSRLSQLSISSSSETSSAWLSSQDSSSSSHCSC---SFCC 94

Query: 656 HWD 664
            WD
Sbjct: 95  FWD 97


>sp|Q6BZF6|SSN2_DEBHA Mediator of RNA polymerase II transcription
           subunit 13 OS=Debaryomyces hansenii GN=SSN2 PE=3 SV=2
          Length = 1774

 Score = 33.9 bits (76), Expect = 0.80
 Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
 Frame = -2

Query: 147 GHESLATQG*-VIKRESDEKAVDSDREAEDDQAYHDENQGEERQADEDE 4
           GHE+ A +   +IK+  + +  D + + +DD    DEN+ E+ ++DED+
Sbjct: 682 GHENHAAENDNIIKKMEELEEEDDNDDDDDDDDDDDENEDEDEESDEDD 730


>sp|P97751|VIPR1_MOUSE Vasoactive intestinal polypeptide receptor 1
           OS=Mus musculus GN=Vipr1 PE=1 SV=3
          Length = 459

 Score = 27.7 bits (60), Expect(2) = 0.99
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 322 IKCIQHLQIFSPIHGYELNR*QCLA*SGSLMKP 224
           + C    Q+FSPIHGY ++R  C     S ++P
Sbjct: 84  LDCPLIFQLFSPIHGYNISR-NCTEEGWSQLEP 115



 Score = 24.6 bits (52), Expect(2) = 0.99
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
 Frame = -3

Query: 629 MRPPATP*DSWTTNLTMLLR-----KGTSATSIAEK--RLQPVRPSFSRPSEHANIQLES 471
           MRPP+ P   W   L   L       G+ A S  ++   LQ +     +  E A  QLE+
Sbjct: 1   MRPPSLPPARWLCVLAGALACALGPAGSRAASPHQECEYLQMIEKQRQQCLEEA--QLEN 58

Query: 470 RK*GCSKRFTRCTDTPSS 417
              GCSK +   T  P++
Sbjct: 59  ETTGCSKMWDNLTCWPTT 76


>sp|Q71L24|RR7_METGY 30S ribosomal protein S7, chloroplastic
           OS=Metasequoia glyptostroboides GN=rps7 PE=3 SV=1
          Length = 155

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -3

Query: 269 KSVTMLGIKWILNETKKSIHKSLYFQLLFEICSSRTQTGNRVTSR 135
           K   +L I+W+L  ++K   ++++F+L +EI  +  + GN +  +
Sbjct: 94  KEGKILAIRWLLESSRKRSGRNMHFKLSYEIMDAAREKGNAIRKK 138


>sp|B1VKJ4|RR7_CRYJA 30S ribosomal protein S7, chloroplastic
           OS=Cryptomeria japonica GN=rps7 PE=3 SV=1
          Length = 155

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 12/45 (26%), Positives = 27/45 (60%)
 Frame = -3

Query: 269 KSVTMLGIKWILNETKKSIHKSLYFQLLFEICSSRTQTGNRVTSR 135
           K   +L I+W+L  ++K   ++++F+L +EI  +  + GN +  +
Sbjct: 94  KEGKILAIRWLLESSRKRSGRNMHFKLSYEIMDAAREKGNAIRKK 138


>sp|Q1RMM5|NP1L5_BOVIN Nucleosome assembly protein 1-like 5 OS=Bos
           taurus GN=NAP1L5 PE=2 SV=1
          Length = 192

 Score = 33.1 bits (74), Expect = 1.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 87  VDSDREAEDDQAYHDENQGEERQADEDE 4
           ++ D E +DD  Y DE +GEE   +E+E
Sbjct: 139 LEGDEEDDDDDEYEDEEEGEEEDEEEEE 166


>sp|P42342|RR7_SPIMX 30S ribosomal protein S7, chloroplastic
           OS=Spirogyra maxima GN=rps7 PE=3 SV=1
          Length = 155

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 254 LGIKWILNETKKSIHKSLYFQLLFEICSSRTQTGNRVTSR 135
           L I+W+L+  +K   +S+  +L +E+  +  QTGN +  R
Sbjct: 99  LAIRWLLSAARKRSGRSMGLKLSYELMDAARQTGNAIRKR 138


>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus
           norvegicus GN=Ythdc1 PE=1 SV=1
          Length = 738

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 147 GHESLATQG*VIKRESDEKAVDSDREAEDDQAYHDENQGEERQADEDE 4
           G E +     V +   D++ VD D E E+D+   +E + EE + +E+E
Sbjct: 204 GEEDVEEDEEVDEDGDDDEEVDEDAEEEEDEEEDEEEEDEEEEEEEEE 251
tr_hit_id A5E6P8
Definition tr|A5E6P8|A5E6P8_LODEL Putative uncharacterized protein OS=Lodderomyces elongisporus
Align length 37
Score (bit) 37.4
E-value 0.85
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958897|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0003_D15, 5'
         (667 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5E6P8|A5E6P8_LODEL Putative uncharacterized protein OS=Lodde...    37   0.85 
tr|Q4RKT6|Q4RKT6_TETNG Chromosome 1 SCAF15025, whole genome shot...    36   1.9  
tr|Q0D1B6|Q0D1B6_ASPTN Putative uncharacterized protein OS=Asper...    36   1.9  
tr|A7YWF3|A7YWF3_BOVIN NPHP1 protein OS=Bos taurus GN=NPHP1 PE=2...    36   2.5  
tr|A7E386|A7E386_BOVIN NCL protein (Fragment) OS=Bos taurus GN=N...    35   3.2  
tr|A2E6A4|A2E6A4_TRIVA Putative uncharacterized protein OS=Trich...    35   3.2  
tr|Q0Q9N0|Q0Q9N0_HHV3 Putative uncharacterized protein OS=Human ...    35   4.2  
tr|Q0SIU5|Q0SIU5_RHOSR Putative uncharacterized protein OS=Rhodo...    35   5.5  
tr|A7PV43|A7PV43_VITVI Chromosome chr4 scaffold_32, whole genome...    35   5.5  
tr|A5C9T9|A5C9T9_VITVI Putative uncharacterized protein OS=Vitis...    35   5.5  
tr|Q8I4U7|Q8I4U7_PLAF7 Putative uncharacterized protein OS=Plasm...    35   5.5  
tr|B6MGF7|B6MGF7_BRAFL Putative uncharacterized protein OS=Branc...    35   5.5  
tr|Q9YTL7|Q9YTL7_ATHV3 Orf 48 OS=Ateline herpesvirus 3 PE=4 SV=1       34   7.2  
tr|Q4YPS3|Q4YPS3_PLABE Casein kinase II regulatory subunit, puta...    34   7.2  
tr|B0EJR9|B0EJR9_ENTDI Putative uncharacterized protein OS=Entam...    34   7.2  
tr|Q7S9G9|Q7S9G9_NEUCR Putative uncharacterized protein OS=Neuro...    34   7.2  
tr|B2APB8|B2APB8_PODAN Predicted CDS Pa_5_10510 (Fragment) OS=Po...    34   7.2  
tr|A8Q766|A8Q766_MALGO Putative uncharacterized protein OS=Malas...    34   7.2  
tr|Q4SN10|Q4SN10_TETNG Chromosome 6 SCAF14544, whole genome shot...    34   9.4  
tr|Q0QA26|Q0QA26_HHV3 Putative uncharacterized protein OS=Human ...    34   9.4  
tr|Q9U8P6|Q9U8P6_CIOIN Nucleolin like protein CiRGG1 OS=Ciona in...    34   9.4  
tr|Q4Z6B1|Q4Z6B1_PLABE Putative uncharacterized protein OS=Plasm...    34   9.4  
tr|Q4Y1E8|Q4Y1E8_PLACH Putative uncharacterized protein (Fragmen...    34   9.4  
tr|B5DJY5|B5DJY5_DROPS GA29049 (Fragment) OS=Drosophila pseudoob...    34   9.4  
tr|B6QA16|B6QA16_PENMA DNA polymerase V, putative OS=Penicillium...    34   9.4  

>tr|A5E6P8|A5E6P8_LODEL Putative uncharacterized protein
           OS=Lodderomyces elongisporus GN=LELG_05287 PE=4 SV=1
          Length = 585

 Score = 37.4 bits (85), Expect = 0.85
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 114 IKRESDEKAVDSDREAEDDQAYHDENQGEERQADEDE 4
           I  E  E+  D D E ++D    DEN GEE + DEDE
Sbjct: 451 IDEEEGEEDDDDDEEEDEDAEEDDENDGEEEEEDEDE 487


>tr|Q4RKT6|Q4RKT6_TETNG Chromosome 1 SCAF15025, whole genome shotgun
            sequence. (Fragment) OS=Tetraodon nigroviridis
            GN=GSTENG00032794001 PE=4 SV=1
          Length = 1176

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 19/45 (42%), Positives = 32/45 (71%)
 Frame = -2

Query: 138  SLATQG*VIKRESDEKAVDSDREAEDDQAYHDENQGEERQADEDE 4
            SLAT+   I ++++  AVD D EA++D+   D++ GEE +A+ED+
Sbjct: 1021 SLATE---IDQDNNNMAVDDDDEADEDEEEEDDD-GEEEEAEEDD 1061


>tr|Q0D1B6|Q0D1B6_ASPTN Putative uncharacterized protein
           OS=Aspergillus terreus (strain NIH 2624) GN=ATEG_00268
           PE=4 SV=1
          Length = 1114

 Score = 36.2 bits (82), Expect = 1.9
 Identities = 17/43 (39%), Positives = 29/43 (67%), Gaps = 1/43 (2%)
 Frame = -2

Query: 135 LATQG*VIKRESDEKAVDS-DREAEDDQAYHDENQGEERQADE 10
           LA  G V+  +++E+ +D  D EAE+D+A  DE++ E  QA++
Sbjct: 176 LAAAGQVVPEDAEEEDIDEEDDEAEEDEAEEDEHEDESEQAED 218


>tr|A7YWF3|A7YWF3_BOVIN NPHP1 protein OS=Bos taurus GN=NPHP1 PE=2
           SV=1
          Length = 686

 Score = 35.8 bits (81), Expect = 2.5
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = -2

Query: 141 ESLATQG*VIKRESDEKAVDSDREAEDDQAYHDENQGEERQADEDE 4
           E++   G + +RE +E + + D E +DD+   +E+ GE+ + +E+E
Sbjct: 106 ENVPETGALAEREEEENSDEEDEEEDDDEEESEESGGEDEETEEEE 151


>tr|A7E386|A7E386_BOVIN NCL protein (Fragment) OS=Bos taurus GN=NCL
           PE=2 SV=1
          Length = 189

 Score = 35.4 bits (80), Expect = 3.2
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -2

Query: 147 GHESLATQG*VIKRESDEKAVDSDREAEDDQAYHDENQGEERQADEDE 4
           G +  AT G   K   + K  DSD E EDD    D++  EE + +E+E
Sbjct: 123 GKKGAATPGKGAKNGKNAKKEDSDEEEEDDDDEDDDDDEEEEEEEEEE 170


>tr|A2E6A4|A2E6A4_TRIVA Putative uncharacterized protein
            OS=Trichomonas vaginalis G3 GN=TVAG_458990 PE=4 SV=1
          Length = 905

 Score = 35.4 bits (80), Expect = 3.2
 Identities = 24/69 (34%), Positives = 39/69 (56%)
 Frame = -2

Query: 207  KLVFPAVV*NLQQPDSDWK*GHESLATQG*VIKRESDEKAVDSDREAEDDQAYHDENQGE 28
            K +F AV   L+  +++ K  +ES +    +I +E DEK  D D E+E+    HD N  +
Sbjct: 836  KGLFGAVSDALKPKENETKKENESPSLMNQLIGKEEDEKK-DDDFESEE----HDNNVND 890

Query: 27   ERQADEDEF 1
            ++ ADE +F
Sbjct: 891  DKNADEKDF 899


>tr|Q0Q9N0|Q0Q9N0_HHV3 Putative uncharacterized protein OS=Human
           herpesvirus 3 GN=HHV3gp13 PE=4 SV=1
          Length = 783

 Score = 35.0 bits (79), Expect = 4.2
 Identities = 17/45 (37%), Positives = 30/45 (66%)
 Frame = -2

Query: 141 ESLATQG*VIKRESDEKAVDSDREAEDDQAYHDENQGEERQADED 7
           +++  +G   + E++E A+D + EAE+D A  DE + EE +A+ED
Sbjct: 117 DAIDDEGDAEEGEAEEDAIDDEGEAEED-AIDDEGEAEEGEAEED 160


>tr|Q0SIU5|Q0SIU5_RHOSR Putative uncharacterized protein
           OS=Rhodococcus sp. (strain RHA1) GN=RHA1_ro00706 PE=4
           SV=1
          Length = 432

 Score = 34.7 bits (78), Expect = 5.5
 Identities = 18/41 (43%), Positives = 26/41 (63%)
 Frame = -2

Query: 123 G*VIKRESDEKAVDSDREAEDDQAYHDENQGEERQADEDEF 1
           G V++ E DE A   D +AE      +E++GEE +ADEDE+
Sbjct: 288 GQVVEPEEDE-AETEDEQAESQPDEGEEDEGEEPEADEDEY 327


>tr|A7PV43|A7PV43_VITVI Chromosome chr4 scaffold_32, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025042001
           PE=4 SV=1
          Length = 425

 Score = 34.7 bits (78), Expect = 5.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 111 KRESDEKAVDSDREAEDDQAYHDENQGEERQADED 7
           + +S E+  D DR + D   YHD ++G +R+ D D
Sbjct: 344 RADSRERGRDHDRRSRDRDRYHDRDRGHDRERDRD 378


>tr|A5C9T9|A5C9T9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_000356 PE=4 SV=1
          Length = 419

 Score = 34.7 bits (78), Expect = 5.5
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 111 KRESDEKAVDSDREAEDDQAYHDENQGEERQADED 7
           + +S E+  D DR + D   YHD ++G +R+ D D
Sbjct: 344 RADSRERGRDHDRRSRDRDRYHDRDRGHDRERDRD 378