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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958801
Clone id TST39A01NGRL0002_P12
Library
Length 581
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_P12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAAGCATTGAGAGAGAGAGAGACAGAGAGACCTCTCTCGCGCAGAAAGAGCAGCAAAGAG
CACCAACCTGAAGTGGGTACTTGTGTAATTTTGCTATGTACACAGACAGTTCCTGTGAAG
GCTTTAAGCACGTGACTAGGAGCACGCTTCCTTGAGTACTACGCACATACACACACAGTG
ACACACCTTTAATTAGCGAGCCGGACACACAGAGGTCACCCCCCCCCCCCCCCACACATA
CACTAACGCACACACACACATTGCCTCACGCAGGGGTGTGCTCGGCAATGTCTTCAAGCC
TCTCTTATGGGACACACAGAGGCATTGAATGGATGCCCCTATCACGACAGGGGATAACCA
AATGCAGGGAATTTTTTTTTTCCCCCCCTGTGGCAATGACTTCCGGGGCAAAAAAAAAAA
AGGGGAAACAACATCAGATCTGTTGCCCGCGATGCAACTGGGGTGAACCCCAAAGCTAAC
AACAGCAAAGTGATATTGGGCTCGCCTGCGGATATTAAGCTCCTTTCCCCACATCTTCAC
GTGACTGACGTGCGGAGGGAAAGGGAAATGCTTGTTGATGT
■■Homology search results ■■ -
sp_hit_id Q6ZRP5
Definition sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204 OS=Homo sapiens
Align length 40
Score (bit) 35.0
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958801|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_P12, 5'
         (581 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204 ...    35   0.27 
sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesv...    30   6.7  

>sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204
           OS=Homo sapiens PE=2 SV=2
          Length = 223

 Score = 35.0 bits (79), Expect = 0.27
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +2

Query: 152 LSTTHIHTQ*HTFN*RAGHTEVTPPPPHTYTNAHTHIASR 271
           L+ +H+HT  HT     GHT       H +T+AH+H  +R
Sbjct: 110 LTLSHMHTHAHTHAHTHGHTHTRAHSTHAHTHAHSHYHTR 149


>sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human
           herpesvirus 6A (strain Uganda-1102) GN=U88 PE=4 SV=1
          Length = 413

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 30/121 (24%), Positives = 39/121 (32%)
 Frame = -3

Query: 366 CIWLSPVVIGASIQCLCVSHKRGLKTLPSTPLREAMCVCALVYVWGGGGVTSVCPAR*LK 187
           C+ +   V      CLCV             L   +CVC  V V        VC    L 
Sbjct: 248 CVCVCVCVCLCVCVCLCVC------------LCVCLCVCVCVCV-----CLCVCLCVCLC 290

Query: 186 VCHCVCMCVVLKEACS*SRA*SLHRNCLCT*QNYTSTHFRLVLFAALSARERSLCLSLSQ 7
           VC CVC+C++    C           C+C            +          SLC+SL  
Sbjct: 291 VCVCVCVCLLCMSLCM----------CMC----------MCMCMCMCMCMCMSLCMSLCM 330

Query: 6   C 4
           C
Sbjct: 331 C 331
tr_hit_id Q8NH31
Definition tr|Q8NH31|Q8NH31_HUMAN Seven transmembrane helix receptor OS=Homo sapiens
Align length 69
Score (bit) 30.8
E-value 0.056
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958801|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_P12, 5'
         (581 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8NH31|Q8NH31_HUMAN Seven transmembrane helix receptor OS=Hom...    31   0.056
tr|Q4RDS8|Q4RDS8_TETNG Chromosome undetermined SCAF15796, whole ...    36   0.73 
tr|Q4SEG1|Q4SEG1_TETNG Chromosome undetermined SCAF14621, whole ...    37   1.0  
tr|A9V0T3|A9V0T3_MONBE Predicted protein OS=Monosiga brevicollis...    32   1.5  
tr|Q0GNK9|Q0GNK9_9ZZZZ Putative uncharacterized protein OS=uncul...    35   2.3  
tr|A9V347|A9V347_MONBE Ubiquitin carboxyl-terminal hydrolase OS=...    35   3.0  
tr|A9V8M3|A9V8M3_MONBE Predicted protein OS=Monosiga brevicollis...    32   3.3  
tr|A2PZX5|A2PZX5_9VIRU GfV-C9-ORF1 OS=Glypta fumiferanae ichnovi...    35   4.0  
tr|A9VEG6|A9VEG6_MONBE Predicted protein OS=Monosiga brevicollis...    35   4.0  
tr|A9V5H0|A9V5H0_MONBE Predicted protein OS=Monosiga brevicollis...    35   4.0  
tr|Q8KM86|Q8KM86_9MOLU Putative uncharacterized protein OS=Mycop...    34   6.8  
tr|Q9M2C6|Q9M2C6_ARATH Putative uncharacterized protein T20K12.2...    34   6.8  
tr|Q0WNA4|Q0WNA4_ARATH Putative uncharacterized protein At3g6138...    34   6.8  
tr|A9V918|A9V918_MONBE Predicted protein OS=Monosiga brevicollis...    34   6.8  
tr|A9V8P0|A9V8P0_MONBE Predicted protein OS=Monosiga brevicollis...    34   6.8  
tr|A9UX31|A9UX31_MONBE Predicted protein OS=Monosiga brevicollis...    34   6.8  
tr|A9UWA2|A9UWA2_MONBE Predicted protein OS=Monosiga brevicollis...    34   6.8  
tr|A8P051|A8P051_BRUMA Hypothetical 17.1 kDa protein in PUR5 3'r...    34   6.8  
tr|Q4T167|Q4T167_TETNG Chromosome 18 SCAF10707, whole genome sho...    33   8.8  
tr|Q2WF72|Q2WF72_9MOLU Putative uncharacterized protein (Fragmen...    33   8.8  
tr|A7R005|A7R005_VITVI Chromosome chr7 scaffold_294, whole genom...    33   8.8  
tr|A5C9R3|A5C9R3_VITVI Putative uncharacterized protein OS=Vitis...    33   8.8  
tr|A9V141|A9V141_MONBE Predicted protein OS=Monosiga brevicollis...    33   8.8  

>tr|Q8NH31|Q8NH31_HUMAN Seven transmembrane helix receptor OS=Homo
           sapiens PE=4 SV=1
          Length = 346

 Score = 30.8 bits (68), Expect(2) = 0.056
 Identities = 23/69 (33%), Positives = 31/69 (44%)
 Frame = -3

Query: 366 CIWLSPVVIGASIQCLCVSHKRGLKTLPSTPLREAMCVCALVYVWGGGGVTSVCPAR*LK 187
           C++L   V      C+CV     L       L  ++CVC  V         SVC +  L+
Sbjct: 108 CVYLHISVYLCVYVCICVCVSVSLCVSVCACL--SLCVCIRV---------SVCLS--LR 154

Query: 186 VCHCVCMCV 160
           VC CVC+CV
Sbjct: 155 VCVCVCLCV 163



 Score = 29.6 bits (65), Expect(2) = 0.056
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -1

Query: 185 CVTVCVCA*YSRKRAPSHVLKAFTGTVCVHSKITQVPTSGWCSLLLF 45
           C  VCV    S   A   V  AF+  +C  S I  +P+S WC LLL+
Sbjct: 184 CECVCVSVSLSDPPALVPVSGAFSPQLCASSLILLLPSS-WCFLLLW 229


>tr|Q4RDS8|Q4RDS8_TETNG Chromosome undetermined SCAF15796, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00037748001 PE=4 SV=1
          Length = 277

 Score = 35.8 bits (81), Expect(2) = 0.73
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = -3

Query: 261 MCVCALVYVWGGGGVTSVCPAR*LKVCHCVCMC 163
           +CVC  V V  GGG+   C +  L+VC CVC+C
Sbjct: 203 VCVCVCVCVCVGGGLA--CSSADLRVCVCVCVC 233



 Score = 20.8 bits (42), Expect(2) = 0.73
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 185 CVTVCVCA 162
           CV VCVCA
Sbjct: 227 CVCVCVCA 234


>tr|Q4SEG1|Q4SEG1_TETNG Chromosome undetermined SCAF14621, whole
            genome shotgun sequence OS=Tetraodon nigroviridis
            GN=GSTENG00019575001 PE=4 SV=1
          Length = 1086

 Score = 36.6 bits (83), Expect = 1.0
 Identities = 29/112 (25%), Positives = 43/112 (38%)
 Frame = -3

Query: 360  WLSPVVIGASIQCLCVSHKRGLKTLPSTPLREAMCVCALVYVWGGGGVTSVCPAR*LKVC 181
            W  P ++ +  + + VSH +   +   T   E  CVC LV V        VC      VC
Sbjct: 913  WADPTLLTSKARKMVVSHNQNRMSPKCT--EEQRCVCVLVCV-------CVC------VC 957

Query: 180  HCVCMCVVLKEACS*SRA*SLHRNCLCT*QNYTSTHFRLVLFAALSARERSL 25
             CVC+CV +               C+C+   +    F   L + L   E+ L
Sbjct: 958  ACVCVCVCV---------------CVCSGNKFVYLSFTFCLSSRLPFHEKLL 994


>tr|A9V0T3|A9V0T3_MONBE Predicted protein OS=Monosiga brevicollis
           GN=25902 PE=4 SV=1
          Length = 340

 Score = 32.0 bits (71), Expect(2) = 1.5
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -3

Query: 318 CVSHK-RGLKTLPST-PLREAMCVCALVYVWGGGGVTSVCPAR*LKVCHCVCMCV 160
           C  HK R L+  PS   +R  +CVC  V V        VC    + VC CVC+CV
Sbjct: 7   CSFHKVRRLRVCPSRWCVRVCVCVCVCVCV-----CACVCVCVCVCVCVCVCVCV 56



 Score = 23.5 bits (49), Expect(2) = 1.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 185 CVTVCVCA*YSRKRAPSHV 129
           CV VCVC    ++R   HV
Sbjct: 51  CVCVCVCVCDGKRRLARHV 69


>tr|Q0GNK9|Q0GNK9_9ZZZZ Putative uncharacterized protein
           OS=uncultured organism PE=4 SV=1
          Length = 140

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +2

Query: 161 THIHTQ*HTFN*RAGHTEVTPPPPHTYTNAHTHIASRR 274
           TH HT  HT      HT  T    HT+T+ HTH    R
Sbjct: 66  THTHTHTHTHTHTHTHTHTTHTHTHTHTHTHTHAERER 103



 Score = 33.5 bits (75), Expect = 8.8
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 161 THIHTQ*HTFN*RAGHTEVTPPPPHTYTNAHTHIASRR 274
           TH HT  HT      HT       HT+T+ HTH  + R
Sbjct: 64  THTHTHTHTHTHTHTHTHTHTTHTHTHTHTHTHTHAER 101


>tr|A9V347|A9V347_MONBE Ubiquitin carboxyl-terminal hydrolase
           OS=Monosiga brevicollis GN=26706 PE=3 SV=1
          Length = 507

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = -3

Query: 342 IGASIQCLCVSHKRGLKTLPSTPLREAM----CVCALVYVWGGGGVTSVCPAR*LKVCHC 175
           + A++QCL          L +  LR+A+    CVC  V VW       VC    + VC C
Sbjct: 116 MNATLQCL----------LSAPALRKAIDRCVCVCVCVCVWCVCVCVCVCVCVCVCVCVC 165

Query: 174 VCMCV 160
           VC+CV
Sbjct: 166 VCVCV 170


>tr|A9V8M3|A9V8M3_MONBE Predicted protein OS=Monosiga brevicollis
           GN=33940 PE=4 SV=1
          Length = 412

 Score = 32.3 bits (72), Expect(2) = 3.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -3

Query: 285 PSTPLREAMCVCALVYVWGGGGVTSVCPAR*LKVCHCVCMCV 160
           P TP +  +CVC  V V        VC    + VC CVC+CV
Sbjct: 75  PGTPGKWCVCVCVCVCV-----CVCVCVCVCVCVCVCVCVCV 111



 Score = 21.9 bits (45), Expect(2) = 3.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 185 CVTVCVCA*YS 153
           CV VCVCA +S
Sbjct: 130 CVCVCVCAPFS 140


>tr|A2PZX5|A2PZX5_9VIRU GfV-C9-ORF1 OS=Glypta fumiferanae ichnovirus
           PE=4 SV=1
          Length = 197

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 36/122 (29%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
 Frame = -3

Query: 348 VVIGASIQCLCVSHKRGLKTLPSTPLREAMCVCALVYVWGGGGVTSVCPAR*LKVCHCVC 169
           V +  S+ C+CVS        P   +   +CVC  V V         C    + VC CVC
Sbjct: 37  VCVSVSV-CVCVS------VCPCVRVSVCVCVCVCVCV-----CVCFCVCFCVCVCVCVC 84

Query: 168 MCVVLKEACS*SRA*SLHRN-------CLCT*QNYTSTHFRLVLFAALSARERSLCLSLS 10
           +CV +  + S S + S+  +       CLC           L L+  L     SLCLSL 
Sbjct: 85  VCVCVSVSVSVSLSVSVSVSVCLFQFLCLC-----------LCLYLCLCL---SLCLSLC 130

Query: 9   QC 4
            C
Sbjct: 131 LC 132


>tr|A9VEG6|A9VEG6_MONBE Predicted protein OS=Monosiga brevicollis
           GN=30620 PE=4 SV=1
          Length = 210

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 27/64 (42%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
 Frame = -3

Query: 186 VCHCVCMCVVLKEACS*SRA*SLHRN---CLCT*QNYTSTHFRLVLFAALSARERSLCLS 16
           VC CVC+CV L  + S S + S+  +   CLC      S    L L   LS    SLCLS
Sbjct: 44  VCVCVCVCVCLSVSLSLSVSLSVSLSLSLCLCL-SVSVSVSLSLCLSLCLSV-SLSLCLS 101

Query: 15  LSQC 4
           LS C
Sbjct: 102 LSLC 105


>tr|A9V5H0|A9V5H0_MONBE Predicted protein OS=Monosiga brevicollis
           GN=33452 PE=4 SV=1
          Length = 1021

 Score = 34.7 bits (78), Expect = 4.0
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = +2

Query: 161 THIHTQ*HTFN*RAGHTEVTPPPPHTYTNAHTHIASRRGVL 283
           TH HT  HT      HT  T    HT+T+ HTH  + RG L
Sbjct: 22  THTHTHTHTHTHTHTHTH-THTHTHTHTHTHTHTHTTRGAL 61