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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958698
Clone id TST39A01NGRL0002_L02
Library
Length 689
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_L02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAAATGCACGGACCTGCAGGAGCAGCAACTCCTTCCTGGTGGGTTCGAGGCTTGAGCGAC
AGCGATGCTTGGCGGAGCCATGCATACACACGTGCCCAATAGACAGTGAGGATATAGGAC
ACGCCTTCACTCCCAGCAGCTTGTGCATACCCTAATTGGACGAATGTCTTCATCTCTGAG
TTCTCCCTTGTTGCATCGCCTCGGGCCTGACACAGGTGATGTAGCACAAGCAGCCACAGA
CCCTGAGAAACCTTTACCATCGTCCCCGTCTTATTCTTTGGGTCAACTTCCTATTCCAAG
CACAGACGAAACAGCTGATGGTTACTCTACAGCCAGGATGCCAAAGGTTCGTGCCTCTAC
TACATGTGGATATGATGACAATCCTGCACGCCTTGTGGGCAGACATAAACAGGAGCAAGA
AGAACAACAGCAAGAAGGTCTTGTCTCCAGTCGGAAGTCCCGCCTTGTATGGGATGGCTC
TGGTTTTATTCCTGGAAGTTCAGAGCTAGGGTCAGAATTTCAGGAACTTGGGTTTCGCAG
GTTGTCATCAAGACCTAAAGATGAGCTCAGAAGGTTTCGGTGCAGTCTGTTTTGGTTAGG
ATTGGATCAATCGACACCATTTCGCACATTGGCCTCATGGACAGCGGTAACTCTGCTAGC
CATTGGCATACCTGTTTGCTACCTAGTCT
■■Homology search results ■■ -
sp_hit_id Q9IA18
Definition sp|Q9IA18|EVX2_HETFR Homeobox even-skipped homolog protein 2 OS=Heterodontus francisci
Align length 36
Score (bit) 31.2
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958698|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_L02, 5'
         (689 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9IA18|EVX2_HETFR Homeobox even-skipped homolog protein 2 OS=...    31   5.5  
sp|Q49537|VLPE_MYCHR Variant surface antigen E OS=Mycoplasma hyo...    31   7.1  
sp|Q2TAL5|SMTL2_HUMAN Smoothelin-like protein 2 OS=Homo sapiens ...    31   7.1  
sp|Q8UVC1|INVS_DANRE Inversin OS=Danio rerio GN=invs PE=2 SV=1         31   7.1  
sp|Q5RKL5|STEA3_RAT Metalloreductase STEAP3 OS=Rattus norvegicus...    30   9.3  
sp|Q8CI59|STEA3_MOUSE Metalloreductase STEAP3 OS=Mus musculus GN...    30   9.3  
sp|Q6ZMQ8|LMTK1_HUMAN Serine/threonine-protein kinase LMTK1 OS=H...    30   9.3  

>sp|Q9IA18|EVX2_HETFR Homeobox even-skipped homolog protein 2
           OS=Heterodontus francisci GN=EVX2 PE=3 SV=1
          Length = 424

 Score = 31.2 bits (69), Expect = 5.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 111 PHCLLGTCVCMAPPSIAVAQASNPPGRSCCSCRSVH 4
           PH L  +    A  + A A AS P G + CSC S H
Sbjct: 333 PHGLNSSAATAAAAAAAAAAASTPAGTAPCSCLSCH 368


>sp|Q49537|VLPE_MYCHR Variant surface antigen E OS=Mycoplasma
           hyorhinis GN=vlpE PE=4 SV=1
          Length = 243

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 22/88 (25%), Positives = 34/88 (38%)
 Frame = +2

Query: 236 TDPEKPLPSSPSYSLGQLPIPSTDETADGYSTARMPKVRASTTCGYDDNPARLVGRHKXX 415
           +DP++  PS+P+ S GQ   PS   T+DG  +       +        NP    G+H   
Sbjct: 145 SDPKESNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNPTTSDGQHSNP 204

Query: 416 XXXXXXXGLVSSRKSRLVWDGSGFIPGS 499
                  G  S+  +    DG    P +
Sbjct: 205 SNPTTSDGQHSNPSNPTTSDGQHSNPSN 232


>sp|Q2TAL5|SMTL2_HUMAN Smoothelin-like protein 2 OS=Homo sapiens
           GN=SMTNL2 PE=2 SV=1
          Length = 461

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 8/73 (10%)
 Frame = +2

Query: 203 GPDTG--DVAQ--AATDPEKPLPSSPSYSLGQLPIPSTDETADGY----STARMPKVRAS 358
           GP  G  ++AQ  +A DP +P P S S  L   P+ +    +D +    S A +  + A+
Sbjct: 163 GPGDGPPEIAQNFSAPDPPRPRPVSLSLRLPHQPVTAITRVSDRFSGETSAAALSPMSAA 222

Query: 359 TTCGYDDNPARLV 397
           T  G + +P+ ++
Sbjct: 223 TLGGLNPSPSEVI 235


>sp|Q8UVC1|INVS_DANRE Inversin OS=Danio rerio GN=invs PE=2 SV=1
          Length = 1021

 Score = 30.8 bits (68), Expect = 7.1
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 203 GPDTGDVAQAATDPEKPLPSSPSYSLGQLPIPSTDETADGY-STARMPKVRASTTCGYDD 379
           GPDTG      +  E+  P+  S      P+ +    A G+  T   PK R STT  +  
Sbjct: 704 GPDTGISLNCGSANERRSPAGSSRPGSAKPVHTGTHVAPGHMETTPTPKPRPSTTGAHSK 763

Query: 380 NPARLVGRH 406
           N ++   +H
Sbjct: 764 NASQDTPQH 772


>sp|Q5RKL5|STEA3_RAT Metalloreductase STEAP3 OS=Rattus norvegicus
           GN=Steap3 PE=2 SV=1
          Length = 488

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 608 QSTPFRTLASWTAVTLLAIGIPVCY 682
           ++ P R L SW   TLLA+G+ VC+
Sbjct: 202 EAIPLRLLPSWKVPTLLALGLFVCF 226


>sp|Q8CI59|STEA3_MOUSE Metalloreductase STEAP3 OS=Mus musculus
           GN=Steap3 PE=1 SV=1
          Length = 488

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 608 QSTPFRTLASWTAVTLLAIGIPVCY 682
           ++ P R L SW   TLLA+G+ VC+
Sbjct: 202 EAIPLRLLPSWKVPTLLALGLFVCF 226


>sp|Q6ZMQ8|LMTK1_HUMAN Serine/threonine-protein kinase LMTK1 OS=Homo
           sapiens GN=AATK PE=1 SV=2
          Length = 1374

 Score = 30.4 bits (67), Expect = 9.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 206 PDTGDVAQAATDPEKPLPSSPSYSLGQLPIPSTDETA 316
           P     A+  T P  PLPS PS S    P+PS + +A
Sbjct: 780 PKLATEAEGTTGPRLPLPSVPSPSQEGAPLPSEEASA 816
tr_hit_id A9SSV4
Definition tr|A9SSV4|A9SSV4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 48
Score (bit) 54.3
E-value 7.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958698|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_L02, 5'
         (689 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SSV4|A9SSV4_PHYPA Predicted protein OS=Physcomitrella paten...    54   7e-06
tr|A9TLR8|A9TLR8_PHYPA Predicted protein OS=Physcomitrella paten...    48   5e-04
tr|A9SXL7|A9SXL7_PHYPA Predicted protein OS=Physcomitrella paten...    47   9e-04
tr|A9SU44|A9SU44_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.002
tr|A7P0K4|A7P0K4_VITVI Chromosome chr19 scaffold_4, whole genome...    42   0.028
tr|A5C6F3|A5C6F3_VITVI Putative uncharacterized protein OS=Vitis...    42   0.028
tr|Q6YTJ0|Q6YTJ0_ORYSJ Os02g0566400 protein OS=Oryza sativa subs...    42   0.048
tr|A2X677|A2X677_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.048
tr|A4TB46|A4TB46_MYCGI Putative uncharacterized protein OS=Mycob...    40   0.14 
tr|Q67V36|Q67V36_ORYSJ Os06g0635200 protein OS=Oryza sativa subs...    40   0.14 
tr|B8B0G7|B8B0G7_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.14 
tr|A7R0Z5|A7R0Z5_VITVI Chromosome undetermined scaffold_332, who...    40   0.18 
tr|Q9LTR3|Q9LTR3_ARATH Emb|CAA16777.1 OS=Arabidopsis thaliana PE...    39   0.24 
tr|Q9LPT3|Q9LPT3_ARATH F11F12.5 protein OS=Arabidopsis thaliana ...    39   0.24 
tr|Q9C6P7|Q9C6P7_ARATH Putative uncharacterized protein F17J6.15...    39   0.24 
tr|Q94A36|Q94A36_ARATH At1g50630/F17J6_15 OS=Arabidopsis thalian...    39   0.24 
tr|Q8VXV8|Q8VXV8_ARATH AT3g20300/MQC12_5 (Putative uncharacteriz...    39   0.24 
tr|Q7XV19|Q7XV19_ORYSJ OSJNBa0064H22.7 protein OS=Oryza sativa s...    39   0.24 
tr|Q2V4H5|Q2V4H5_ARATH Uncharacterized protein At1g50630.2 OS=Ar...    39   0.24 
tr|Q01J80|Q01J80_ORYSA OSIGBa0152K17.7 protein OS=Oryza sativa G...    39   0.24 
tr|A3AUA0|A3AUA0_ORYSJ Putative uncharacterized protein OS=Oryza...    39   0.24 
tr|A2XTZ7|A2XTZ7_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.24 
tr|B6SZ58|B6SZ58_MAIZE Putative uncharacterized protein OS=Zea m...    37   0.90 
tr|A9RF58|A9RF58_PHYPA Predicted protein OS=Physcomitrella paten...    37   1.5  
tr|Q84QR8|Q84QR8_ORYSJ Putative uncharacterized protein OJ1081_B...    35   4.5  
tr|Q0J4C3|Q0J4C3_ORYSJ Os08g0521300 protein OS=Oryza sativa subs...    35   4.5  
tr|B8B8U5|B8B8U5_ORYSI Putative uncharacterized protein OS=Oryza...    35   4.5  
tr|A3BUY1|A3BUY1_ORYSJ Putative uncharacterized protein OS=Oryza...    35   4.5  
tr|A1VBX9|A1VBX9_DESVV Putative uncharacterized protein OS=Desul...    34   7.6  
tr|B4FJ88|B4FJ88_MAIZE Putative uncharacterized protein OS=Zea m...    34   7.6  

>tr|A9SSV4|A9SSV4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_83550 PE=4 SV=1
          Length = 424

 Score = 54.3 bits (129), Expect = 7e-06
 Identities = 25/48 (52%), Positives = 32/48 (66%)
 Frame = +2

Query: 533 FRRLSSRPKDELRRFRCSLFWLGLDQSTPFRTLASWTAVTLLAIGIPV 676
           ++R+ S PKDELRRFR  L WLGLDQST  + + S     LLA  +P+
Sbjct: 34  YKRVLSNPKDELRRFRSGLSWLGLDQSTTIKVVCSRILFVLLAFVVPI 81


>tr|A9TLR8|A9TLR8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_196280 PE=4 SV=1
          Length = 389

 Score = 48.1 bits (113), Expect = 5e-04
 Identities = 23/45 (51%), Positives = 30/45 (66%)
 Frame = +2

Query: 542 LSSRPKDELRRFRCSLFWLGLDQSTPFRTLASWTAVTLLAIGIPV 676
           +SS P+DEL +FR  L WLGLDQST F  + S     LLA+ +P+
Sbjct: 1   MSSNPRDELVQFRSGLAWLGLDQSTIFSVIWSRILFVLLAVVVPI 45


>tr|A9SXL7|A9SXL7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_136919 PE=4 SV=1
          Length = 450

 Score = 47.4 bits (111), Expect = 9e-04
 Identities = 23/47 (48%), Positives = 28/47 (59%)
 Frame = +2

Query: 533 FRRLSSRPKDELRRFRCSLFWLGLDQSTPFRTLASWTAVTLLAIGIP 673
           ++R+ S P DELR FR  L WLGLDQST  + L SW    L    +P
Sbjct: 21  YKRMLSHPCDELRYFRNGLRWLGLDQSTKPKMLFSWIVFLLFTFVVP 67


>tr|A9SU44|A9SU44_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_235058 PE=4 SV=1
          Length = 439

 Score = 46.2 bits (108), Expect = 0.002
 Identities = 21/48 (43%), Positives = 30/48 (62%)
 Frame = +2

Query: 533 FRRLSSRPKDELRRFRCSLFWLGLDQSTPFRTLASWTAVTLLAIGIPV 676
           ++R  S P+DELR+FR  L WLGLDQS+  + + S      LA  +P+
Sbjct: 55  YKRTLSNPRDELRQFRSGLAWLGLDQSSTIKVIWSGFVFVALAALVPI 102


>tr|A7P0K4|A7P0K4_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027267001
           PE=4 SV=1
          Length = 435

 Score = 42.4 bits (98), Expect = 0.028
 Identities = 22/48 (45%), Positives = 29/48 (60%)
 Frame = +2

Query: 533 FRRLSSRPKDELRRFRCSLFWLGLDQSTPFRTLASWTAVTLLAIGIPV 676
           F+R  S  +DEL+ FR  L W+ +DQST      SW+   LLAI +PV
Sbjct: 14  FQRSISYAQDELQSFRSWLRWMCVDQSTISTGCLSWSVFILLAIAVPV 61


>tr|A5C6F3|A5C6F3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007068 PE=4 SV=1
          Length = 435

 Score = 42.4 bits (98), Expect = 0.028
 Identities = 22/48 (45%), Positives = 29/48 (60%)
 Frame = +2

Query: 533 FRRLSSRPKDELRRFRCSLFWLGLDQSTPFRTLASWTAVTLLAIGIPV 676
           F+R  S  +DEL+ FR  L W+ +DQST      SW+   LLAI +PV
Sbjct: 14  FQRSISYAQDELQSFRSWLRWMCVDQSTISTGCLSWSVFILLAIAVPV 61


>tr|Q6YTJ0|Q6YTJ0_ORYSJ Os02g0566400 protein OS=Oryza sativa subsp.
           japonica GN=P0020D05.9 PE=2 SV=1
          Length = 449

 Score = 41.6 bits (96), Expect = 0.048
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = +2

Query: 533 FRRLSSRPKDELRRFRCSLFWLGLDQSTPFRTLASWTAVTLLAIGIP 673
           + R  S   DEL  FR  L W+ +D ST  R  ASW A  LLA+  P
Sbjct: 30  YARCVSHAGDELHSFRSCLAWMCVDHSTRARGAASWAAFLLLAVAAP 76


>tr|A2X677|A2X677_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_07714 PE=4 SV=1
          Length = 448

 Score = 41.6 bits (96), Expect = 0.048
 Identities = 21/47 (44%), Positives = 25/47 (53%)
 Frame = +2

Query: 533 FRRLSSRPKDELRRFRCSLFWLGLDQSTPFRTLASWTAVTLLAIGIP 673
           + R  S   DEL  FR  L W+ +D ST  R  ASW A  LLA+  P
Sbjct: 30  YARCVSHAGDELHSFRSCLAWMCVDHSTRARGAASWAAFLLLAVAAP 76


>tr|A4TB46|A4TB46_MYCGI Putative uncharacterized protein
           OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_3088
           PE=4 SV=1
          Length = 564

 Score = 40.0 bits (92), Expect = 0.14
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = +2

Query: 218 DVAQAATDPEKPLPSSPSYSLGQLPIPSTDETADGYSTARMPKVRASTTCGYDDNPARLV 397
           D+ +A TD ++P+  +P+   G  P+PS D   DG+      ++ A      DD  ARL+
Sbjct: 194 DLVRALTDTDRPVTPAPTVPAGAWPVPSGD-VVDGWPAMSQDRIAAQVAAMTDDQRARLI 252


>tr|Q67V36|Q67V36_ORYSJ Os06g0635200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0019I19.14 PE=2 SV=1
          Length = 452

 Score = 40.0 bits (92), Expect = 0.14
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +2

Query: 536 RRLSSRPKDELRRFRCSLFWLGLDQSTPFRTLASWTAVTLLAIGIP 673
           +R  SR  DEL+ FR  L W+ +D S P+    SW    LLA+ +P
Sbjct: 37  QRCVSRADDELQWFRSCLRWVCMDHSGPWGAALSWLLFLLLAVAVP 82