DK958587 |
Clone id |
TST39A01NGRL0002_G10 |
Library |
TST39 |
Length |
777 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_G10. 5' end sequence. |
Accession |
DK958587 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL657Contig1 |
Sequence |
CCCAACTCTCCGGTGCCGAATTCACCAAGGAACAAGCTGAGGAGTATGCTCGCAAGTTCA GTGCCTGGATGAACGAGATTGACTCTTATGTAGGGTATATCCACTTGTTGGATTGGGCCC AACAAACAGCAAAGAATGATACCACTGATTGTAACGTGATTCTTAAGGGGGTTTCTGACT TTGTGGTGGGGGTCGCGGGATTGGCTGGAAAGTTAGCAGAAGCAGTAACTTTACGAATCA CGAGTCTCGTCAAGTCTGCAGCAAGCTATGCAACACAAAAAGGATCTGCTGTGAATGTGG GCTTTACAATTGAGACAACTGAGACCACTGGTGCCAAGGATCCCATCCAACCCATCTCCT ATGCTTCTACAATCATGAGTAAGACCCAAAATGGCAAGTCCGTGTCAGAATCAAGCACAA TTACATTGGCCTCCTTCATCTACAAACTCAATAGTGATGCAATTATCTCCATGGCAGATC AGCTTGCTGATGGCTCCACACTTTCAGGTGCTAAACAATATATGGACTATGTAAATGCTC CACTTAACGACTTTGAAAAGTCCCGCCACCATCGTCTCTAAGCTCTGATTTTTCTACTAC ATGTTACTGCCATGTGAAGCCTTCCCATCCTCCCTCTCTAGTTGGATTCTAAGAATAATA CAATGTCACAAGTCTCGTGTGCACTATGACATCTCACCCTCCCATGTTTTACTTTTGTTG CTTTTAAATATAATCAATTTTCTGTTTTACTCCCTAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P0C7T6 |
Definition |
sp|P0C7T6|ATX1L_MOUSE Ataxin-1-like OS=Mus musculus |
Align length |
90 |
Score (bit) |
33.5 |
E-value |
1.3 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q2J5V7 |
Definition |
tr|Q2J5V7|Q2J5V7_FRASC Molybdate ABC transporter, permease protein OS=Frankia sp. (strain CcI3) |
Align length |
81 |
Score (bit) |
38.5 |
E-value |
0.49 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958587|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0002_G10, 5' (755 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q2J5V7|Q2J5V7_FRASC Molybdate ABC transporter, permease prote... 39 0.49 tr|Q9CI25|Q9CI25_LACLA N-acetylmuramidase OS=Lactococcus lactis ... 38 0.64 tr|B3TZ71|B3TZ71_9GAMM Flagellin A OS=Aeromonas veronii bv. sobr... 38 0.83 tr|Q218Y7|Q218Y7_RHOPB Putative uncharacterized protein OS=Rhodo... 37 1.4 tr|A8ZXK4|A8ZXK4_DESOH YD repeat protein OS=Desulfococcus oleovo... 37 1.4 tr|A7SIY7|A7SIY7_NEMVE Predicted protein OS=Nematostella vectens... 37 1.9 tr|A3PC44|A3PC44_PROM0 Type II secretory pathway component PulD-... 36 3.2 tr|Q0RC92|Q0RC92_FRAAA Molybdenum ABC transporter membrane subun... 35 4.1 tr|B8BU08|B8BU08_THAPS Predicted protein OS=Thalassiosira pseudo... 35 4.1 tr|B4KKM9|B4KKM9_DROMO GI17813 OS=Drosophila mojavensis GN=GI178... 35 4.1 tr|B8HXA6|B8HXA6_9CHRO TonB-dependent siderophore receptor OS=Cy... 35 5.4 tr|Q9DDX2|Q9DDX2_XENLA Calcium/calmodulin-dependent protein kina... 35 7.1 tr|A8KF84|A8KF84_BURPS Putative cell wall surface anchor family ... 35 7.1 tr|B3NL61|B3NL61_DROER GG21149 OS=Drosophila erecta GN=GG21149 P... 35 7.1 tr|A3XKV6|A3XKV6_9FLAO Putative transmembrane protein OS=Leeuwen... 34 9.2 tr|Q54GE4|Q54GE4_DICDI Putative uncharacterized protein OS=Dicty... 34 9.2 tr|Q245I5|Q245I5_TETTH Putative uncharacterized protein OS=Tetra... 34 9.2 tr|Q59Y83|Q59Y83_CANAL Putative uncharacterized protein OS=Candi... 34 9.2 tr|Q59Y28|Q59Y28_CANAL Putative uncharacterized protein OS=Candi... 34 9.2
>tr|Q2J5V7|Q2J5V7_FRASC Molybdate ABC transporter, permease protein OS=Frankia sp. (strain CcI3) GN=Francci3_3985 PE=3 SV=1 Length = 338
Score = 38.5 bits (88), Expect = 0.49 Identities = 25/81 (30%), Positives = 36/81 (44%) Frame = -2
Query: 352 GWMGSLAPVVSVVSIVKPTFTADPFCVA*LAADLTRLVIRKVTASANFPANPATPTTKSE 173 GW G P SV ++ TF A PF V + L R A+A A P + Sbjct: 176 GWFGITIPFTSVGVVIAQTFVAMPFLVVSVEGALNSADRRFEDAAATLGAGPWMTFRRVT 235
Query: 172 TPLRITLQSVVSFFAVCWAQS 110 P+ T +V + A+CWA++ Sbjct: 236 MPM--TAPAVAAGAALCWARA 254
>tr|Q9CI25|Q9CI25_LACLA N-acetylmuramidase OS=Lactococcus lactis subsp. lactis GN=acmD PE=4 SV=1 Length = 361
Score = 38.1 bits (87), Expect = 0.64 Identities = 38/163 (23%), Positives = 71/163 (43%), Gaps = 15/163 (9%) Frame = +3
Query: 63 AWMNEIDSYVGYIHLLDWAQQTAKNDTTDCNVILKGVSDFVVGVAGLAGKLA--EAVTLR 236 AW SY + W + D T + + +S+ + V G+++ AVT Sbjct: 128 AWRENTSSY---LDATAWLEGRYATDPTYASKLNSVISELGLSVYDQGGEISGGTAVTTS 184
Query: 237 ITSLVKSAASYATQKGSAVNV-----GFTIETTETTGAKD--------PIQPISYASTIM 377 ++ SA +Y Q+G +++ G T++ + + + + ++ AST Sbjct: 185 SSASTNSAGTYKVQEGDSLSAIAAQYGTTVDALVSANSLENANDIHVGEVLQVAGASTTT 244
Query: 378 SKTQNGKSVSESSTITLASFIYKLNSDAIISMADQLADGSTLS 506 + T +VS SST T+ S D++ S+A+Q G T+S Sbjct: 245 TSTNTTSNVSSSSTYTVKS------GDSLYSIAEQY--GMTVS 279
>tr|B3TZ71|B3TZ71_9GAMM Flagellin A OS=Aeromonas veronii bv. sobria GN=flaA PE=4 SV=1 Length = 304
Score = 37.7 bits (86), Expect = 0.83 Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 2/120 (1%) Frame = +3
Query: 96 YIHLLDWAQQTAKNDTTDCNVILKG--VSDFVVGVAGLAGKLAEAVTLRITSLVKSAASY 269 Y L+ + AK+ T +L G V F VG A+ +T R+T+ A Sbjct: 116 YDQLMTEIDRVAKDTTFGGKQLLNGGYVGSFQVGADA-----AQTITFRMTTAFTIAGMA 170
Query: 270 ATQKGSAVNVGFTIETTETTGAKDPIQPISYASTIMSKTQNGKSVSESSTITLASFIYKL 449 + KG+A TI T+ TTG+K+P + + S + N ++ S+ +A+ Y + Sbjct: 171 SAAKGNA-----TISTS-TTGSKEPFKVTASTSAVTVANMNSIKLASSAQSAMANLDYMI 224
>tr|Q218Y7|Q218Y7_RHOPB Putative uncharacterized protein OS=Rhodopseudomonas palustris (strain BisB18) GN=RPC_1487 PE=4 SV=1 Length = 525
Score = 37.0 bits (84), Expect = 1.4 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 2/97 (2%) Frame = +3
Query: 243 SLVKSAASYATQKGSAVNVGFTIETTETTGAKDPIQPISYASTIMSKTQNGKSVSESSTI 422 SL + A +T KG+AV+ G TI+ T T + Y S M Q+G I Sbjct: 80 SLQRLVAINSTVKGAAVSAGSTIDNTGQTAGQKTANLDFYDSVDMLNAQSGDRYLFGGRI 139
Query: 423 TLASFIYKLNSDAIISMADQL--ADGSTLSGAKQYMD 527 T A ++ ADQ+ +G+T++G KQ +D Sbjct: 140 TDA---------PPVAAADQILNGNGATIAGLKQVID 167
>tr|A8ZXK4|A8ZXK4_DESOH YD repeat protein OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=Dole_1156 PE=4 SV=1 Length = 2961
Score = 37.0 bits (84), Expect = 1.4 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 15/130 (11%) Frame = +3
Query: 84 SYVGYIHLLDWAQQTAKNDTTDCNVILKGVSDFVVGVAGLAGKLAEAVTL----RITSLV 251 SY GY+ L NDT V LK + F V + G G L ITS Sbjct: 67 SYWGYVVLNGRTYWLNNNDTFVQPVSLKRFNAFFVSLLGAPGTALHIEILPPKPEITSFT 126
Query: 252 KSAASYATQKGSAVNVGFTIETTETT------GAKDP-----IQPISYASTIMSKTQNGK 398 + AS+A +GS + +T E +T G DP + P + + ++ Sbjct: 127 STPASFA--QGSTATLDWTTENADTVSIEPGIGPVDPDGSVTVAPDATTTYTLTAANAYG 184
Query: 399 SVSESSTITL 428 SVSE++T+T+ Sbjct: 185 SVSETATVTV 194
>tr|A7SIY7|A7SIY7_NEMVE Predicted protein OS=Nematostella vectensis GN=v1g212997 PE=4 SV=1 Length = 499
Score = 36.6 bits (83), Expect = 1.9 Identities = 34/144 (23%), Positives = 68/144 (47%), Gaps = 3/144 (2%) Frame = +3
Query: 117 AQQTAKNDTTDCNVILKGVSDFVVGVAGLAGKLAEAVTLRITSLVKSAASYATQKG---S 287 A +T K+++ C ILK +FV + + + A + + + + +A ++G S Sbjct: 17 ANETLKSNSHSCVKILKTAGEFVSKICAVKEQCANQLLSVVETFKRKSAEMKKERGALSS 76
Query: 288 AVNVGFTIETTETTGAKDPIQPISYASTIMSKTQNGKSVSESSTITLASFIYKLNSDAII 467 A+++ T+ T A+D ++ S S +SK+ + ++ S+ + F ++ +A I Sbjct: 77 AMSLWETLLLEYETEAQDMLKLCSKLSKDISKSLSDEA-SKRKALYKKIFTFREAGEARI 135
Query: 468 SMADQLADGSTLSGAKQYMDYVNA 539 S AD + AK + DY A Sbjct: 136 SKADD-------ARAKCHRDYCEA 152
>tr|A3PC44|A3PC44_PROM0 Type II secretory pathway component PulD-like protein OS=Prochlorococcus marinus (strain MIT 9301) GN=P9301_06961 PE=3 SV=1 Length = 572
Score = 35.8 bits (81), Expect = 3.2 Identities = 27/101 (26%), Positives = 44/101 (43%) Frame = +3
Query: 255 SAASYATQKGSAVNVGFTIETTETTGAKDPIQPISYASTIMSKTQNGKSVSESSTITLAS 434 SAA Y G++V FTI T+ T+GA Q + AST + T ++ + T+ Sbjct: 187 SAADYLANLGASVTKTFTITTSVTSGASQS-QAVQGASTSSTTTDQSETSVKVYGATIGP 245
Query: 435 FIYKLNSDAIISMADQLADGSTLSGAKQYMDYVNAPLNDFE 557 + +I+ D+ T+ G K +D N L + Sbjct: 246 LV------GLIATTDERLQTVTMVGEKYLIDLANGFLQKLD 280
>tr|Q0RC92|Q0RC92_FRAAA Molybdenum ABC transporter membrane subunit OS=Frankia alni (strain ACN14a) GN=modB PE=3 SV=1 Length = 317
Score = 35.4 bits (80), Expect = 4.1 Identities = 23/80 (28%), Positives = 35/80 (43%) Frame = -2
Query: 349 WMGSLAPVVSVVSIVKPTFTADPFCVA*LAADLTRLVIRKVTASANFPANPATPTTKSET 170 W G P + +V TF A PF + + L R A+A A+P T + Sbjct: 155 WFGITLPFTTAGVVVAQTFVAMPFLIVSVEGALNSADRRFEDAAATLGADPWTTFRRVTV 214
Query: 169 PLRITLQSVVSFFAVCWAQS 110 PL +V + A+CWA++ Sbjct: 215 PL--VAPAVAAGAALCWARA 232
>tr|B8BU08|B8BU08_THAPS Predicted protein OS=Thalassiosira pseudonana CCMP1335 GN=THAPSDRAFT_2317 PE=4 SV=1 Length = 317
Score = 35.4 bits (80), Expect = 4.1 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Frame = +3
Query: 105 LLDWAQQTAKNDTTDCNVILKGVSDFVVGVAG--LAGKLAEAVTLRITSLVKSAASYATQ 278 LL W + N T V + + + VG+ +AG + + + + T ++ AAS AT Sbjct: 202 LLKWKELQTNNGKTTLLVKVSAMENLAVGITSALIAGVVTQPIDVVKTRMMTQAASTATP 261
Query: 279 KGSAVNVGFTIETTE 323 SAV+ T+ TE Sbjct: 262 YTSAVDCALTVVRTE 276
>tr|B4KKM9|B4KKM9_DROMO GI17813 OS=Drosophila mojavensis GN=GI17813 PE=4 SV=1 Length = 827
Score = 35.4 bits (80), Expect = 4.1 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 10/112 (8%) Frame = +3
Query: 111 DWAQQTAKNDTTDCNVILKGVSDFVVGVAGLAGKLAEAVTLRITS----------LVKSA 260 D Q A+ND + N+ + ++ GVAGL G AEAV + +S LV++A Sbjct: 427 DSLQPLAENDPSKVNIKREYTTE---GVAGLLGSKAEAVPIGASSIFLQNGFRDALVENA 483
Query: 261 ASYATQKGSAVNVGFTIETTETTGAKDPIQPISYASTIMSKTQNGKSVSESS 416 A + N+ I TTE P S +S+ S + N S +S Sbjct: 484 AELEPDTAGSDNIYHIISTTE--------GPTSSSSSSSSSSNNPSSTERTS 527
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