NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958525
Clone id TST39A01NGRL0002_D20
Library
Length 704
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_D20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CACAAACTCTGCTTTTCATTTCTGCTATCGCTAACGCACAAGGTTTGATTTTTGAGGAGT
TTGCAAGAGATGCTGGGCAGCTTCAGCGAACTAATTTCTTTGGATCGCAAGCTCTGATAC
ATGCAGGGATTGTTGCCCTTGATGTGAAGGCCATGCAAGCAGAAAACCTCCTCTAGGGTC
TCCGCAGGGAGCATTTGTGTGAAAAGTTATACAATCATTTTCAGGCTCAAATACTCGCTG
GAATAGCTACCCGAGTCAGCAAGAACACTCCTCGTTGGTTGCATTCTTGTCAGCTTGTAA
GCCCTCCCTCGTGAAGACACTTCTGGCAAACCAGTTTTGAGGAGGCAGGTGATCTGAGGG
ACAAATTTGGTCTGTTTGGATTGTTGTCAAAGTGCCCGTGCTTCCATGGCTTCCATAGGA
TCAACCATATGTGCACATGAAAAACATGGTCAATGTATGCCTAGCAGCGATTCTATGTCC
TTGAAACTTGCTCGCCATCAATTAAGCTATGGAAATCAGGGATCATTCTTATGTAGCCAG
AATAGGCCACCAAAAAGCGCTTGTATTGTTGCAAAAGCAAAGGTTGGGGATTCTACGGGT
AAAGGTCCCACTTGCGATTCACACTTGCGACATGCTGTTAAGTTGGCATTACGTACAGCT
GCAGCCTCTGCTGCAGCTGCTATGTTGTGCTTTCATGGTGTCAT
■■Homology search results ■■ -
sp_hit_id Q8DVC1
Definition sp|Q8DVC1|FOLD_STRMU Bifunctional protein folD OS=Streptococcus mutans
Align length 69
Score (bit) 30.4
E-value 9.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958525|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_D20, 5'
         (704 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8DVC1|FOLD_STRMU Bifunctional protein folD OS=Streptococcus ...    30   9.7  

>sp|Q8DVC1|FOLD_STRMU Bifunctional protein folD OS=Streptococcus
           mutans GN=folD PE=3 SV=1
          Length = 284

 Score = 30.4 bits (67), Expect = 9.7
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
 Frame = -1

Query: 197 QMLPAETLEEVFCLHGLH------IKGNNPCMYQSLRSKEISSLKLPSISCKLLKNQTLC 36
           Q+  A  +E++   HGL       + G+NP     +R+KE S++K         K++T+C
Sbjct: 15  QLHLANKVEQMKEKHGLVPGLVVILVGDNPASQVYVRNKERSAIKAG------FKSETIC 68

Query: 35  VSDSRNEKQ 9
           +SDS +E++
Sbjct: 69  LSDSISEEE 77
tr_hit_id B0YLN0
Definition tr|B0YLN0|B0YLN0_9VIRU Per os infectivity factor 3-like protein OS=Glossina pallidipes salivary gland hypertrophy virus
Align length 27
Score (bit) 34.7
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958525|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_D20, 5'
         (704 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0YLN0|B0YLN0_9VIRU Per os infectivity factor 3-like protein ...    35   6.1  
tr|Q5P8U5|Q5P8U5_AZOSE Putative uncharacterized protein OS=Azoar...    34   8.0  
tr|Q29GF2|Q29GF2_DROPS GA20262 OS=Drosophila pseudoobscura pseud...    34   8.0  
tr|B4HB86|B4HB86_DROPE GL21317 OS=Drosophila persimilis GN=GL213...    34   8.0  

>tr|B0YLN0|B0YLN0_9VIRU Per os infectivity factor 3-like protein
           OS=Glossina pallidipes salivary gland hypertrophy virus
           GN=SGHV076 PE=4 SV=1
          Length = 211

 Score = 34.7 bits (78), Expect = 6.1
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = +3

Query: 351 DLRDKFGLFGLLSKCPCFHGFHRINHM 431
           ++ D  G F L+SKC CF GF ++N+M
Sbjct: 159 EINDDGGDFNLMSKCKCFDGFIKVNYM 185


>tr|Q5P8U5|Q5P8U5_AZOSE Putative uncharacterized protein OS=Azoarcus
           sp. (strain EbN1) GN=AZOSEA01420 PE=4 SV=1
          Length = 2043

 Score = 34.3 bits (77), Expect = 8.0
 Identities = 28/83 (33%), Positives = 41/83 (49%)
 Frame = +3

Query: 123 AGIVALDVKAMQAENLL*GLRREHLCEKLYNHFQAQILAGIATRVSKNTPRWLHSCQLVS 302
           A IVAL +KA      L G + +     +  H  A+IL  +  R  +     L S +  S
Sbjct: 212 ARIVAL-LKAATVVLELCGQKGDAKSRIVRQHRNARILGALDVRDGRELAESLESLE-AS 269

Query: 303 PPS*RHFWQTSFEEAGDLRDKFG 371
             + R F QT+F++  D+RDKFG
Sbjct: 270 QANRRLFTQTTFKQTADVRDKFG 292


>tr|Q29GF2|Q29GF2_DROPS GA20262 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA20262 PE=4 SV=2
          Length = 488

 Score = 34.3 bits (77), Expect = 8.0
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 183 RREHL-CEKLYNHFQAQILAGIATRVSKNTPRWLHSCQLVS--PPS*RHFWQTS 335
           R EHL C++        I  G A R+  +T RWL S Q     PP+ RHF+Q S
Sbjct: 196 RGEHLHCQRCMRFLGMAIFNGEAARLWADTVRWLPSAQKSDGLPPAIRHFFQFS 249


>tr|B4HB86|B4HB86_DROPE GL21317 OS=Drosophila persimilis GN=GL21317
           PE=4 SV=1
          Length = 488

 Score = 34.3 bits (77), Expect = 8.0
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +3

Query: 183 RREHL-CEKLYNHFQAQILAGIATRVSKNTPRWLHSCQLVS--PPS*RHFWQTS 335
           R EHL C++        I  G A R+  +T RWL S Q     PP+ RHF+Q S
Sbjct: 196 RGEHLHCQRCMRFLGMAIFNGEAARLWADTVRWLPSAQKSDGLPPAIRHFFQFS 249