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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958509
Clone id TST39A01NGRL0002_D04
Library
Length 700
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0002_D04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AACAGAACCTGCAAAAAACAATTTTGTGAAGCAACAACCTGAAGAACAGAAGCCTGAAAA
TTTGGGTGTGAAGGCAGAAGATGCTACAGATAAGGAGTTAGCATACAATCAAATTATTCC
CATCCTCTCATCAGAGGAAGTATGGAAACCAGAGGACGGGAAACATATACAATTCAATGA
GGCATTTCAATCTCTGCCTACTCCAGTAATGGCCTGTTCCACTCCAAGCAATCTGTTACC
TCTGCCTCTGTAAATGAGAGGCCATAAACAGAACAGAGGGACTGAAGATAGGGTGATAGA
TTCACCATGGCTAACGACAAGCATGGGAAAGAAATACTGTTAAGAGGCAATAACAACAAT
AGAACACGGCGAGCCACTATACGACTAACATTATTTTAACTCAAAGCATGGAAAGGCAAA
GCTCCCTAGAGGTTTGTAACTCAAAAGTACAGGCAATTTCTTGGGTGGCAATATAACTCG
CTTTATGGAAAAGTATCTACTGCATAAGATTCCCAGCAGTGCCTGCATCGTATGCAGTAG
ACAGACATGGAATAATCTGACATCCACAAACCAAGCTACCAAATGTGCAAGCAAGACCAC
CTTCATTCAGCTTGCAGTGTGCCAAAAAAATCCAAGCACATTCAGTATACATTTTCTCGT
TGTTCAGTACACAGGTACAAAGCCCTTACCAATACCTGTC
■■Homology search results ■■ -
sp_hit_id Q18DN4
Definition sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain DSM 16790)
Align length 53
Score (bit) 33.5
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958509|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_D04, 5'
         (700 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain D...    33   1.1  
sp|Q47QV9|SYI_THEFY Isoleucyl-tRNA synthetase OS=Thermobifida fu...    31   5.6  
sp|Q5NGW8|ENO_FRATT Enolase OS=Francisella tularensis subsp. tul...    31   7.4  
sp|A0Q5J9|ENO_FRATN Enolase OS=Francisella tularensis subsp. nov...    31   7.4  
sp|Q14IC0|ENO_FRAT1 Enolase OS=Francisella tularensis subsp. tul...    31   7.4  
sp|Q8FZT8|KUP_BRUSU Probable potassium transport system protein ...    30   9.6  
sp|B0CHH0|KUP_BRUSI Probable potassium transport system protein ...    30   9.6  
sp|A5VRD1|KUP_BRUO2 Probable potassium transport system protein ...    30   9.6  
sp|Q8YI23|KUP_BRUME Probable potassium transport system protein ...    30   9.6  
sp|A9M640|KUP_BRUC2 Probable potassium transport system protein ...    30   9.6  
sp|Q57CC4|KUP_BRUAB Probable potassium transport system protein ...    30   9.6  
sp|Q2YQM9|KUP_BRUA2 Probable potassium transport system protein ...    30   9.6  
sp|Q0BKV1|ENO_FRATO Enolase OS=Francisella tularensis subsp. hol...    30   9.6  
sp|Q2A278|ENO_FRATH Enolase OS=Francisella tularensis subsp. hol...    30   9.6  

>sp|Q18DN4|HMU_HALWD Halomucin OS=Haloquadratum walsbyi (strain DSM
            16790) GN=hmu PE=4 SV=1
          Length = 9159

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +2

Query: 515  SSACIVCSRQTWNNLTSTNQATKCASKTTFIQLAVCQKNPSTFSIHFLVVQYT 673
            ++A ++ S Q    LTS N AT   ++T    L + + +  TFS  F VV Y+
Sbjct: 3589 TAAGLIVSAQDTGGLTSLNNATAVTNETGTATLTITESDTGTFSPTFTVVGYS 3641


>sp|Q47QV9|SYI_THEFY Isoleucyl-tRNA synthetase OS=Thermobifida fusca
           (strain YX) GN=ileS PE=3 SV=1
          Length = 1060

 Score = 31.2 bits (69), Expect = 5.6
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -3

Query: 599 WSCLHIW*LGLWMSDYSMSVYCIRC 525
           W+   IW  GL + DY +S YC RC
Sbjct: 168 WAIKQIWDKGLLVQDYRISPYCPRC 192


>sp|Q5NGW8|ENO_FRATT Enolase OS=Francisella tularensis subsp.
           tularensis GN=eno PE=3 SV=1
          Length = 456

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 5   EPAKNNFVKQQPEEQKPENLGVKAEDATDKELAYNQIIPILSSEEVWKPED 157
           +PA + F K    E K EN  + +E+  D   A+ +  PI+S E+    ED
Sbjct: 244 DPASSEFYKDGKYELKSENKSLTSEEMIDYYAAWVEKYPIVSIEDGLAEED 294


>sp|A0Q5J9|ENO_FRATN Enolase OS=Francisella tularensis subsp.
           novicida (strain U112) GN=eno PE=3 SV=1
          Length = 456

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 5   EPAKNNFVKQQPEEQKPENLGVKAEDATDKELAYNQIIPILSSEEVWKPED 157
           +PA + F K    E K EN  + +E+  D   A+ +  PI+S E+    ED
Sbjct: 244 DPASSEFYKDGKYELKSENKSLTSEEMIDYYAAWVEKYPIVSIEDGLAEED 294


>sp|Q14IC0|ENO_FRAT1 Enolase OS=Francisella tularensis subsp.
           tularensis (strain FSC 198) GN=eno PE=3 SV=1
          Length = 456

 Score = 30.8 bits (68), Expect = 7.4
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 5   EPAKNNFVKQQPEEQKPENLGVKAEDATDKELAYNQIIPILSSEEVWKPED 157
           +PA + F K    E K EN  + +E+  D   A+ +  PI+S E+    ED
Sbjct: 244 DPASSEFYKDGKYELKSENKSLTSEEMIDYYAAWVEKYPIVSIEDGLAEED 294


>sp|Q8FZT8|KUP_BRUSU Probable potassium transport system protein kup
           OS=Brucella suis GN=kup PE=3 SV=1
          Length = 651

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 318 VVSHGESITL---SSVPLFCLWPLIYRGRGNRLLGVEQAITG 202
           ++SHGE+  L     +P F LWP++       ++  +  ITG
Sbjct: 295 ILSHGEAAALPFFQMIPSFALWPMVLLATAATVIASQAVITG 336


>sp|B0CHH0|KUP_BRUSI Probable potassium transport system protein kup
           OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=kup
           PE=3 SV=1
          Length = 651

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 318 VVSHGESITL---SSVPLFCLWPLIYRGRGNRLLGVEQAITG 202
           ++SHGE+  L     +P F LWP++       ++  +  ITG
Sbjct: 295 ILSHGEAAALPFFQMIPSFALWPMVLLATAATVIASQAVITG 336


>sp|A5VRD1|KUP_BRUO2 Probable potassium transport system protein kup
           OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC
           10512) GN=kup PE=3 SV=1
          Length = 651

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 318 VVSHGESITL---SSVPLFCLWPLIYRGRGNRLLGVEQAITG 202
           ++SHGE+  L     +P F LWP++       ++  +  ITG
Sbjct: 295 ILSHGEAAALPFFQMIPSFALWPMVLLATAATVIASQAVITG 336


>sp|Q8YI23|KUP_BRUME Probable potassium transport system protein kup
           OS=Brucella melitensis GN=kup PE=3 SV=1
          Length = 651

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 318 VVSHGESITL---SSVPLFCLWPLIYRGRGNRLLGVEQAITG 202
           ++SHGE+  L     +P F LWP++       ++  +  ITG
Sbjct: 295 ILSHGEAAALPFFQMIPSFALWPMVLLATAATVIASQAVITG 336


>sp|A9M640|KUP_BRUC2 Probable potassium transport system protein kup
           OS=Brucella canis (strain ATCC 23365 / NCTC 10854)
           GN=kup PE=3 SV=1
          Length = 651

 Score = 30.4 bits (67), Expect = 9.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -2

Query: 318 VVSHGESITL---SSVPLFCLWPLIYRGRGNRLLGVEQAITG 202
           ++SHGE+  L     +P F LWP++       ++  +  ITG
Sbjct: 295 ILSHGEAAALPFFQMIPSFALWPMVLLATAATVIASQAVITG 336
tr_hit_id Q244X4
Definition tr|Q244X4|Q244X4_TETTH Putative uncharacterized protein OS=Tetrahymena thermophila SB210
Align length 81
Score (bit) 35.8
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958509|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0002_D04, 5'
         (700 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q244X4|Q244X4_TETTH Putative uncharacterized protein OS=Tetra...    36   2.7  
tr|Q5CVW6|Q5CVW6_CRYPV Sushi-domain containing secreted protein;...    34   7.9  

>tr|Q244X4|Q244X4_TETTH Putative uncharacterized protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00694430 PE=4
            SV=1
          Length = 3713

 Score = 35.8 bits (81), Expect = 2.7
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
 Frame = +2

Query: 467  GNITRFMEKYLLHKIPSSACIVCSRQTWNNLTSTNQATKCASKTTFIQ-----LAVCQKN 631
            GN+ + +  +  ++IP+S CI C  +    L S+N  TKC       Q      +VC+ N
Sbjct: 786  GNLIQLIYTHPTNQIPTSLCIPCPTKNGYYLNSSNNCTKCDDSCQECQDDTKKCSVCKNN 845

Query: 632  ----PSTFSIHFLVVQYTGTK 682
                P    +     QYT TK
Sbjct: 846  LFQMPDKTCVKACPNQYTFTK 866


>tr|Q5CVW6|Q5CVW6_CRYPV Sushi-domain containing secreted protein;
           with a signal peptide, low complexity region followed by
           a sushi domain OS=Cryptosporidium parvum Iowa II
           GN=cgd8_2530 PE=4 SV=1
          Length = 1006

 Score = 34.3 bits (77), Expect = 7.9
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +2

Query: 2   TEPAKNNFVKQQPEEQKPENLG---VKAEDATDKELAYNQIIPILSSEEVWKPEDGKHIQ 172
           T+P ++   + +PEE KP+       K+E+A  +E   ++  P  S  E  KPE+ KH +
Sbjct: 159 TKPGESKSDESKPEETKPDETKPEEAKSEEAKPEETKPDEKNPEESKPEETKPEEAKHDE 218

Query: 173 FN 178
            N
Sbjct: 219 EN 220