DK958403 |
Clone id |
TST39A01NGRL0030_O15 |
Library |
TST39 |
Length |
434 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_O15. 5' end sequence. |
Accession |
DK958403 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL571Contig1 |
Sequence |
CTGGTATCCAAGCAAAAACATGCAGAACGAGGAGGGAGAGAATGTGGATTTGTACATCCC CCGGAAATGCTCGGCTTCGAATCGGTTGATAACTGCGAAGGATCATGCTTCAGTGCAGTT GAACATTGGGCATTTGGATGAAAATGGCCTTTACACTGGCCAATTTACCACATTTGCCTT GTCTGGGTTTGTCCGAGCTCAGGGAGATGCGGATAGTGCTTTTGATCGGCTTTGGCAGAA ACAGAGGGCAAAAATTGGCCAGTAGCTTTAGTGGGCAAGCTCTTAACTCTTTATCAATGT TTTGTCTCCTTGAGCAAAAGGATTTTAGATTTTAATGACTTTCAAGCTGTGCTTGGAAAG CTCTTACTCTGTGAACAAATTTTGAATTTGATGACTTGTCTCTTCTAGAAAAAAAAAAAA AAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P35687 |
Definition |
sp|P35687|RS21_ORYSJ 40S ribosomal protein S21 OS=Oryza sativa subsp. japonica |
Align length |
81 |
Score (bit) |
144.0 |
E-value |
1.0e-34 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NJY4 |
Definition |
tr|A9NJY4|A9NJY4_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
81 |
Score (bit) |
152.0 |
E-value |
1.0e-35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958403|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_O15, 5' (408 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NJY4|A9NJY4_PICSI Putative uncharacterized protein OS=Picea... 152 1e-35 tr|A9NY16|A9NY16_PICSI Putative uncharacterized protein OS=Picea... 150 3e-35 tr|A9TQC7|A9TQC7_PHYPA Predicted protein OS=Physcomitrella paten... 146 6e-34 tr|A9RI12|A9RI12_PHYPA Predicted protein OS=Physcomitrella paten... 146 6e-34 tr|A5B0Z2|A5B0Z2_VITVI Putative uncharacterized protein OS=Vitis... 145 1e-33 tr|Q10LK3|Q10LK3_ORYSJ Os03g0345200 protein OS=Oryza sativa subs... 144 2e-33 tr|B8APE8|B8APE8_ORYSI Putative uncharacterized protein OS=Oryza... 144 2e-33 tr|B6SPN3|B6SPN3_MAIZE 40S ribosomal protein S21 OS=Zea mays PE=... 144 2e-33 tr|A9TSH2|A9TSH2_PHYPA Predicted protein OS=Physcomitrella paten... 144 3e-33 tr|Q7Y199|Q7Y199_ORYSJ 40S subunit ribosomal protein OS=Oryza sa... 142 6e-33 tr|B6TXC9|B6TXC9_MAIZE 40S ribosomal protein S21 OS=Zea mays PE=... 142 6e-33 tr|B6SH48|B6SH48_MAIZE 40S ribosomal protein S21 OS=Zea mays PE=... 142 1e-32 tr|A5BUA6|A5BUA6_VITVI Putative uncharacterized protein (Chromos... 142 1e-32 tr|Q60DM0|Q60DM0_ORYSJ Os03g0667800 protein OS=Oryza sativa subs... 141 2e-32 tr|B8AP26|B8AP26_ORYSI Putative uncharacterized protein OS=Oryza... 141 2e-32 tr|B4FDE3|B4FDE3_MAIZE 40S ribosomal protein S21 OS=Zea mays PE=... 140 3e-32 tr|A9PC55|A9PC55_POPTR Putative uncharacterized protein OS=Popul... 140 3e-32 tr|A9PC23|A9PC23_POPTR Putative uncharacterized protein OS=Popul... 139 7e-32 tr|P93626|P93626_MAIZE 40S ribosomal subunit protein S21 OS=Zea ... 136 5e-31 tr|Q2HVJ1|Q2HVJ1_MEDTR Ribosomal protein S21e OS=Medicago trunca... 135 8e-31 tr|B7FGU9|B7FGU9_MEDTR Putative uncharacterized protein OS=Medic... 132 7e-30 tr|Q8LCB7|Q8LCB7_ARATH 40S ribosomal protein S21 homolog OS=Arab... 130 4e-29 tr|A9NU05|A9NU05_PICSI Putative uncharacterized protein OS=Picea... 121 2e-26 tr|A4S8E0|A4S8E0_OSTLU Ribosomal protein S21, component of cytos... 121 2e-26 tr|Q10LK2|Q10LK2_ORYSJ 40S ribosomal protein S21, putative, expr... 113 4e-24 tr|A8IXG3|A8IXG3_CHLRE Ribosomal protein S21 OS=Chlamydomonas re... 112 7e-24 tr|A7Q4R9|A7Q4R9_VITVI Chromosome chr10 scaffold_50, whole genom... 112 7e-24 tr|A3E3H7|A3E3H7_PFIPI 40S ribosomal protein OS=Pfiesteria pisci... 109 6e-23 tr|A9SFC5|A9SFC5_PHYPA Predicted protein (Fragment) OS=Physcomit... 109 8e-23 tr|B8M8D3|B8M8D3_9EURO 40S ribosomal protein S21 OS=Talaromyces ... 105 9e-22
>tr|A9NJY4|A9NJY4_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 81
Score = 152 bits (383), Expect = 1e-35 Identities = 69/81 (85%), Positives = 78/81 (96%) Frame = +2
Query: 20 MQNEEGENVDLYIPRKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRA 199 MQNEEG+N+DLYIPRKCSA+NRLIT+KDHASVQLNIGHLDENG+YTGQFTTFALSGFVRA Sbjct: 1 MQNEEGQNIDLYIPRKCSATNRLITSKDHASVQLNIGHLDENGIYTGQFTTFALSGFVRA 60
Query: 200 QGDADSAFDRLWQKQRAKIGQ 262 QGDADS DRLWQK++ ++GQ Sbjct: 61 QGDADSGIDRLWQKKKVELGQ 81
>tr|A9NY16|A9NY16_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 81
Score = 150 bits (379), Expect = 3e-35 Identities = 68/81 (83%), Positives = 77/81 (95%) Frame = +2
Query: 20 MQNEEGENVDLYIPRKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRA 199 MQNEEG+N+DLYIPRKCS +NRLIT+KDHASVQLNIGHLDENG+YTGQFTTFALSGFVRA Sbjct: 1 MQNEEGQNIDLYIPRKCSTTNRLITSKDHASVQLNIGHLDENGIYTGQFTTFALSGFVRA 60
Query: 200 QGDADSAFDRLWQKQRAKIGQ 262 QGDADS DRLWQK++ ++GQ Sbjct: 61 QGDADSGIDRLWQKKKVELGQ 81
>tr|A9TQC7|A9TQC7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_108579 PE=4 SV=1 Length = 81
Score = 146 bits (368), Expect = 6e-34 Identities = 67/81 (82%), Positives = 78/81 (96%) Frame = +2
Query: 20 MQNEEGENVDLYIPRKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRA 199 MQNEEG+NVDLYIPRKCS++NRLIT+KD ASVQLN+GH+DENG+YTGQFTTFAL GFVRA Sbjct: 1 MQNEEGDNVDLYIPRKCSSTNRLITSKDVASVQLNVGHVDENGVYTGQFTTFALCGFVRA 60
Query: 200 QGDADSAFDRLWQKQRAKIGQ 262 QGDADSAFDRLW K++A++GQ Sbjct: 61 QGDADSAFDRLWAKKKAELGQ 81
>tr|A9RI12|A9RI12_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_55336 PE=4 SV=1 Length = 81
Score = 146 bits (368), Expect = 6e-34 Identities = 68/81 (83%), Positives = 77/81 (95%) Frame = +2
Query: 20 MQNEEGENVDLYIPRKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRA 199 MQNEEGENVDLYIPRKCS++NRLIT+KD ASVQLN+GHLDENG+YTGQFTTFAL GFVRA Sbjct: 1 MQNEEGENVDLYIPRKCSSTNRLITSKDVASVQLNVGHLDENGVYTGQFTTFALCGFVRA 60
Query: 200 QGDADSAFDRLWQKQRAKIGQ 262 QGDADSA DRLW K++A++GQ Sbjct: 61 QGDADSALDRLWAKKKAELGQ 81
>tr|A5B0Z2|A5B0Z2_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_033219 PE=4 SV=1 Length = 82
Score = 145 bits (366), Expect = 1e-33 Identities = 66/81 (81%), Positives = 77/81 (95%) Frame = +2
Query: 20 MQNEEGENVDLYIPRKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRA 199 MQNEEG+N+DLYIPRKCSA+NRLIT+KDHASVQ+N+GHLDE+G YTGQFTTFAL GFVRA Sbjct: 1 MQNEEGQNMDLYIPRKCSATNRLITSKDHASVQINVGHLDESGTYTGQFTTFALCGFVRA 60
Query: 200 QGDADSAFDRLWQKQRAKIGQ 262 QGDADSA DRLWQK++A++ Q Sbjct: 61 QGDADSALDRLWQKKKAEVRQ 81
>tr|Q10LK3|Q10LK3_ORYSJ Os03g0345200 protein OS=Oryza sativa subsp. japonica GN=Os03g0345200 PE=4 SV=1 Length = 82
Score = 144 bits (363), Expect = 2e-33 Identities = 65/81 (80%), Positives = 77/81 (95%) Frame = +2
Query: 20 MQNEEGENVDLYIPRKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRA 199 MQNEEG+ VDLY+PRKCSA+NR+ITAKDHASVQ+NIGH+DENGLY G+FTTFALSGF+RA Sbjct: 1 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60
Query: 200 QGDADSAFDRLWQKQRAKIGQ 262 QGDADSA DRLWQK++A++ Q Sbjct: 61 QGDADSALDRLWQKRKAEVKQ 81
>tr|B8APE8|B8APE8_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_11539 PE=4 SV=1 Length = 123
Score = 144 bits (363), Expect = 2e-33 Identities = 65/81 (80%), Positives = 77/81 (95%) Frame = +2
Query: 20 MQNEEGENVDLYIPRKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRA 199 MQNEEG+ VDLY+PRKCSA+NR+ITAKDHASVQ+NIGH+DENGLY G+FTTFALSGF+RA Sbjct: 42 MQNEEGQMVDLYVPRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 101
Query: 200 QGDADSAFDRLWQKQRAKIGQ 262 QGDADSA DRLWQK++A++ Q Sbjct: 102 QGDADSALDRLWQKRKAEVKQ 122
>tr|B6SPN3|B6SPN3_MAIZE 40S ribosomal protein S21 OS=Zea mays PE=4 SV=1 Length = 101
Score = 144 bits (363), Expect = 2e-33 Identities = 67/85 (78%), Positives = 76/85 (89%) Frame = +2
Query: 8 PSKNMQNEEGENVDLYIPRKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSG 187 P+ MQNEEG+ VDLY+PRKCSA+NR+ITAKDHASVQ+NIGHLD NGLY G FTTFALSG Sbjct: 17 PTVTMQNEEGKTVDLYVPRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSG 76
Query: 188 FVRAQGDADSAFDRLWQKQRAKIGQ 262 FVRAQGDADS+ DRLWQK++A I Q Sbjct: 77 FVRAQGDADSSLDRLWQKKKADIKQ 101
>tr|A9TSH2|A9TSH2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_199482 PE=4 SV=1 Length = 81
Score = 144 bits (362), Expect = 3e-33 Identities = 66/81 (81%), Positives = 77/81 (95%) Frame = +2
Query: 20 MQNEEGENVDLYIPRKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRA 199 MQNEEG+NVDLYIPRKCS++NRLIT+KD ASVQLN+GH+DENG+YTGQFTTFAL GFVRA Sbjct: 1 MQNEEGDNVDLYIPRKCSSTNRLITSKDVASVQLNVGHVDENGVYTGQFTTFALCGFVRA 60
Query: 200 QGDADSAFDRLWQKQRAKIGQ 262 QGDADSA DRLW K++A++GQ Sbjct: 61 QGDADSALDRLWAKKKAELGQ 81
>tr|Q7Y199|Q7Y199_ORYSJ 40S subunit ribosomal protein OS=Oryza sativa subsp. japonica GN=OSJNBa0039O18.25 PE=4 SV=1 Length = 82
Score = 142 bits (359), Expect = 6e-33 Identities = 64/81 (79%), Positives = 76/81 (93%) Frame = +2
Query: 20 MQNEEGENVDLYIPRKCSASNRLITAKDHASVQLNIGHLDENGLYTGQFTTFALSGFVRA 199 MQNEEG+ VDLY+PRKCS +NR+ITAKDHASVQ+NIGH+DENGLY G+FTTFALSGF+RA Sbjct: 1 MQNEEGQMVDLYVPRKCSTTNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRA 60
Query: 200 QGDADSAFDRLWQKQRAKIGQ 262 QGDADSA DRLWQK++A++ Q Sbjct: 61 QGDADSALDRLWQKRKAEVKQ 81
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