DK958373 |
Clone id |
TST39A01NGRL0030_N09 |
Library |
TST39 |
Length |
622 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_N09. 5' end sequence. |
Accession |
DK958373 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1550Contig1 |
Sequence |
GAGGTGTTGAATGATGTGCAGCATTATGTTATGCTGGTGCGCTATGCGGCACGAACAGCA GTCAATGTGAAAGATGCCTCTGATGAAGTGGAATTGAAGGCGAAATTGACTTGCTTTCAT GCTGCGCTGGTTAAATCTACAGAATTTATGCATGCACGAGTAGAGGAGAACACCCGACAC AGAGAGGGAAGATCTAAGCTCGAGACATGCAGTTCTATGCTAAGAAGGATGGGGGAGCCC CTGCCAGAAGCTTCTCCGGGTAGTAAACATGCTGCATCTAATGCGTTGTTTAATGACATG TATGCGGCAAAGGTATTAGCCATATTTGTATGCAGCGTCCTTGCGGTTGCCCTCTCTGTG AAGCCCAAACGCCCTCTGTCTTGCGTGCACATGGCAGAGCAACCCACGTGGCTGGACTTA CTCCAACGAGTCCAGGACAATGTGAAGAAGCTAACAGATAAAGGCATTGAACACGGCAAG ATCGCCCTTTTGAAAGAGCTAGACCAATTACGCGCGCACACTAATGAGCTTTATGAGATG CTCGACAATTTTCTCAAGCAGGGAACGCCGATTGTCGAGGCCGATAAGTTGAGTCTCAGC CAACAATGCGAGAAGCTTGTGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q337C0 |
Definition |
sp|Q337C0|U496D_ORYSJ UPF0496 protein 4 OS=Oryza sativa subsp. japonica |
Align length |
114 |
Score (bit) |
47.4 |
E-value |
6.0e-05 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9T521 |
Definition |
tr|A9T521|A9T521_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
204 |
Score (bit) |
115.0 |
E-value |
2.0e-24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958373|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_N09, 5' (607 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9T521|A9T521_PHYPA Predicted protein OS=Physcomitrella paten... 115 2e-24 tr|A9SYI8|A9SYI8_PHYPA Predicted protein OS=Physcomitrella paten... 113 7e-24 tr|A9NV33|A9NV33_PICSI Putative uncharacterized protein OS=Picea... 110 8e-23 tr|A9RUC7|A9RUC7_PHYPA Predicted protein OS=Physcomitrella paten... 108 3e-22 tr|A9U0R1|A9U0R1_PHYPA Predicted protein OS=Physcomitrella paten... 102 1e-20 tr|A9SZ49|A9SZ49_PHYPA Predicted protein OS=Physcomitrella paten... 100 7e-20 tr|A9RJN2|A9RJN2_PHYPA Predicted protein OS=Physcomitrella paten... 96 2e-18 tr|A9PCZ4|A9PCZ4_POPTR Putative uncharacterized protein OS=Popul... 59 3e-07 tr|A9LM04|A9LM04_NICBE Bypass1 OS=Nicotiana benthamiana PE=2 SV=1 56 1e-06 tr|A7PZL1|A7PZL1_VITVI Chromosome chr15 scaffold_40, whole genom... 51 5e-05 tr|B8LNP8|B8LNP8_PICSI Putative uncharacterized protein OS=Picea... 51 6e-05 tr|A9NVE1|A9NVE1_PICSI Putative uncharacterized protein OS=Picea... 50 8e-05 tr|Q93Z73|Q93Z73_ARATH At2g46080/T3F17.27 OS=Arabidopsis thalian... 50 1e-04 tr|Q38HV7|Q38HV7_SOLTU Putative uncharacterized protein OS=Solan... 50 1e-04 tr|O82360|O82360_ARATH Expressed protein (Putative uncharacteriz... 50 1e-04 tr|B7ETR9|B7ETR9_ORYSJ cDNA clone:J033112M21, full insert sequen... 47 7e-04 tr|B7FJY5|B7FJY5_MEDTR Putative uncharacterized protein OS=Medic... 46 0.002 tr|A9LM03|A9LM03_NICBE Bypass2 OS=Nicotiana benthamiana PE=2 SV=1 45 0.003 tr|B8BHV2|B8BHV2_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.003 tr|A2PZF0|A2PZF0_IPONI Putative uncharacterized protein In35 OS=... 42 0.021 tr|B4FC10|B4FC10_MAIZE Putative uncharacterized protein OS=Zea m... 39 0.31 tr|B6T7G6|B6T7G6_MAIZE Putative uncharacterized protein OS=Zea m... 37 1.2 tr|A3LZU2|A3LZU2_PICST Dynein heavy chain, cytosolic (DYHC) OS=P... 35 3.4 tr|B2EKF3|B2EKF3_9BACT 3-phosphoshikimate 1-carboxyvinyltransfer... 34 5.8 tr|Q5NKK8|Q5NKK8_CRYNE SXI2a OS=Cryptococcus neoformans var. neo... 34 7.5 tr|B7XJE4|B7XJE4_9MICR Nonsense-mediated mRnA decay protein OS=E... 34 7.5 tr|A6RGW6|A6RGW6_AJECN Chitin synthase OS=Ajellomyces capsulata ... 34 7.6 tr|A5YVU9|A5YVU9_AJECA Chitin synthase OS=Ajellomyces capsulata ... 34 7.6
>tr|A9T521|A9T521_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_88177 PE=4 SV=1 Length = 361
Score = 115 bits (288), Expect = 2e-24 Identities = 78/204 (38%), Positives = 108/204 (52%), Gaps = 3/204 (1%) Frame = +1
Query: 1 VQHYVMLVRYAARTAVNVKDASDEVELKAKLTCFHAALVKSTEFMHARVEENTRHREG-- 174 V+HY MLV+ A N K+ S E++ + A TE A +++T +R+G Sbjct: 126 VEHYQMLVQLALHNLDN-KEISGELK-------YSRARNALTECKEAIKKKDTEYRQGFP 177
Query: 175 RSKLETCSSMLRRMGEPLPEASPGSKHAASNALFNDMYAAKVLAIFVCSVLAVALSVKPK 354 +SKLE CSSMLR MGE L G + N N +Y AKV I +C +L AL+ KPK Sbjct: 178 KSKLENCSSMLRTMGEKLVNPK-GQEAMKGNGFLNAIYGAKVTTILLCGLLVTALACKPK 236
Query: 355 RPLSCVHMAEQPTWLDLLQRVQDNVKKLTDKGIEHGKIALLKELDQLRAHTNELYEMLDN 534 RPL+ + +A W L +Q VK+ TDK G IALL+ELD + A L+E+LD Sbjct: 237 RPLTSLSVASHYKWSASLTTLQQRVKEETDKRKNKGSIALLRELDSVDASVRRLHEILDR 296
Query: 535 FLK-QGTPIVEADKLSLSQQCEKL 603 L + P+ L+Q+ E L Sbjct: 297 HLNGRAFPLSREQSQELAQEVEFL 320
>tr|A9SYI8|A9SYI8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_231755 PE=4 SV=1 Length = 546
Score = 113 bits (283), Expect = 7e-24 Identities = 78/204 (38%), Positives = 109/204 (53%), Gaps = 3/204 (1%) Frame = +1
Query: 1 VQHYVMLVRYAARTAVNVKDASDEVELKAKLTCFHAALVKSTEFMHARVEENTRHREG-- 174 V+HY MLV+ A T N E+ + K + AL + E A V ++T +R+G Sbjct: 127 VEHYQMLVQLALHTLDN-----KEIYGELKHSRARNALAECKE---AIVRKDTEYRQGFP 178
Query: 175 RSKLETCSSMLRRMGEPLPEASPGSKHAASNALFNDMYAAKVLAIFVCSVLAVALSVKPK 354 +SKLE CSSMLR +GE L G + N N +Y AKV IF+C +L AL+ KPK Sbjct: 179 KSKLENCSSMLRTIGEKLVNPK-GQEAYKGNGFLNAIYGAKVTTIFLCGLLVTALACKPK 237
Query: 355 RPLSCVHMAEQPTWLDLLQRVQDNVKKLTDKGIEHGKIALLKELDQLRAHTNELYEMLDN 534 RPL+ + +A W L +Q VK+ TDK G IALL+ELD + A L+++LD Sbjct: 238 RPLATLSVASHYKWSPSLISLQQRVKEETDKRKNKGSIALLRELDNVDASVRRLHDVLDQ 297
Query: 535 FL-KQGTPIVEADKLSLSQQCEKL 603 L ++ P+ L+Q E L Sbjct: 298 HLSERAFPLSRKQARELAQAVEAL 321
>tr|A9NV33|A9NV33_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 366
Score = 110 bits (274), Expect = 8e-23 Identities = 81/205 (39%), Positives = 108/205 (52%), Gaps = 4/205 (1%) Frame = +1
Query: 1 VQHYVMLVRYAARTAVNVKDASDEVELKAKLTCFHAALVKSTEFMHARVEENTRHREGRS 180 V+ Y MLV+ A N +D+ ++AK L + E M + EE R + RS Sbjct: 127 VERYQMLVQLALHCFDNKDSMNDKNLIRAK-----NILHECIEAMKKKDEELDRQGQQRS 181
Query: 181 KLETCSSMLRRMGEPL--PEASPGSKHAASNALFNDMYAAKVLAIFVCSVLAVALSVKPK 354 KLE CSSMLRRMGE L P + GSK + +L MY AK IFVC V+A AL VKP+ Sbjct: 182 KLENCSSMLRRMGEKLTSPVSLDGSK---AGSLLTAMYGAKAATIFVCGVVAAALLVKPR 238
Query: 355 RPLSCVHM-AEQPTWLDLLQRVQDNVKKLTD-KGIEHGKIALLKELDQLRAHTNELYEML 528 RPL +H+ + P+W + R+Q VK+ D K ALL ELD + + +LY +L Sbjct: 239 RPLPSLHLTSSYPSWASSMLRLQSKVKEEIDKKKAGASSSALLHELDCVHSEVKKLYIVL 298
Query: 529 DNFLKQGTPIVEADKLSLSQQCEKL 603 D L ADK S + EK+ Sbjct: 299 DKML--------ADKTSSASNREKM 315
>tr|A9RUC7|A9RUC7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_178214 PE=4 SV=1 Length = 357
Score = 108 bits (269), Expect = 3e-22 Identities = 70/182 (38%), Positives = 96/182 (52%), Gaps = 5/182 (2%) Frame = +1
Query: 1 VQHYVMLVRYAARTAVNVKDASDEVEL----KAKLTCFHAALVKSTEFMHARVEENTRHR 168 ++ Y MLV+ A R + VK+ + A C A +K TE+ + Sbjct: 121 LEQYQMLVQVAIRN-LQVKECGKDANFYRARNALHDCLAAIKMKDTEY---------KQG 170
Query: 169 EGRSKLETCSSMLRRMGEPLPEASPGSKHAAS-NALFNDMYAAKVLAIFVCSVLAVALSV 345 RSKLE+CSSMLR MGE L +P A N N +Y AKV IF+C ++ +AL+ Sbjct: 171 HARSKLESCSSMLRTMGEKL--VNPKVMEAVKGNGFLNAIYGAKVTTIFLCGLVVIALAC 228
Query: 346 KPKRPLSCVHMAEQPTWLDLLQRVQDNVKKLTDKGIEHGKIALLKELDQLRAHTNELYEM 525 KPKRPL +H++ Q W L +Q VK+ TDK G IALL+ELD + LYE+ Sbjct: 229 KPKRPLVNLHVSNQCLWASSLLSLQQRVKEETDKRKNKGSIALLRELDNVDVLVRRLYEV 288
Query: 526 LD 531 +D Sbjct: 289 VD 290
>tr|A9U0R1|A9U0R1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_99989 PE=4 SV=1 Length = 361
Score = 102 bits (255), Expect = 1e-20 Identities = 64/163 (39%), Positives = 90/163 (55%), Gaps = 3/163 (1%) Frame = +1
Query: 124 TEFMHARVEENTRHREG--RSKLETCSSMLRRMGEPLPEASPGSKHAASNALFNDMYAAK 297 +E A ++T +R+G +SKLE CSSMLR MGE L G + N N +Y AK Sbjct: 159 SECKEAINRKDTVYRQGFPKSKLENCSSMLRNMGEKLVNPK-GLEAIRGNGFLNAIYGAK 217
Query: 298 VLAIFVCSVLAVALSVKPKRPLSCVHMAEQPTWLDLLQRVQDNVKKLTDKGIEHGKIALL 477 V IF+C +L AL+ KPKRPLS + +A W L +Q VK+ TDK G IALL Sbjct: 218 VTTIFLCGLLVTALTCKPKRPLSSLSVASHYKWSPSLISLQQRVKEDTDKRKNKGSIALL 277
Query: 478 KELDQLRAHTNELYEMLDNFLK-QGTPIVEADKLSLSQQCEKL 603 +ELD + A L+ +LD +L + P+ + L+ ++L Sbjct: 278 RELDSVDASVRRLHGILDQYLSGRAFPLSQEQAQELALDVDEL 320
>tr|A9SZ49|A9SZ49_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_234562 PE=4 SV=1 Length = 376
Score = 100 bits (249), Expect = 7e-20 Identities = 69/209 (33%), Positives = 108/209 (51%), Gaps = 8/209 (3%) Frame = +1
Query: 1 VQHYVMLVRYAARTAVNVKDASDEVELKAKLTCFHAALVKSTEFMHARVEENTRHREG-- 174 V++Y LV+ A N ++ E + ++ A + A +++T +++G Sbjct: 120 VENYQTLVQLALHNVDNRTESCSEGK-------YYRARNTLADCKEAIKKKDTEYKQGVP 172
Query: 175 RSKLETCSSMLRRMGEPL-----PEASPGSKHAASNALFNDMYAAKVLAIFVCSVLAVAL 339 +SKLE CSS+LR MGE L PEA G N L N +Y AK+ IF+C+++ AL Sbjct: 173 KSKLENCSSLLRTMGEKLINPRGPEAIKG------NGLLNAIYGAKLTTIFLCNLVVTAL 226
Query: 340 SVKPKRPLSCVHMAEQPTWLDLLQRVQDNVKKLTDKGIEHGKIALLKELDQLRAHTNELY 519 + KP+RPL+ +H+A W L +Q VK+ DK G IALL+EL L+ Sbjct: 227 ACKPRRPLASLHLANHYKWSGSLVSLQQKVKEEIDKSKNMGSIALLRELHDTDVSVRRLH 286
Query: 520 EMLD-NFLKQGTPIVEADKLSLSQQCEKL 603 E+LD + ++ P+ +D L + E L Sbjct: 287 EVLDWHLTERNFPMRRSDVAELKIEVEVL 315
>tr|A9RJN2|A9RJN2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_159473 PE=4 SV=1 Length = 381
Score = 95.9 bits (237), Expect = 2e-18 Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 4/197 (2%) Frame = +1
Query: 1 VQHYVMLVRYAARTAVNVKDASDE---VELKAKLTCFHAALVKSTEFMHARVEENTRHRE 171 V++Y MLV+ A + ++ ++ V K LT F A+ K + E N Sbjct: 121 VENYQMLVQLALHNLESSIESGNDGRYVRAKNALTEFEEAMKKKEAMLEKEAESN--QDV 178
Query: 172 GRSKLETCSSMLRRMGEPLPEASP-GSKHAASNALFNDMYAAKVLAIFVCSVLAVALSVK 348 +SKLE CSSMLR MGE L SP G + +N N +Y KV AIF+C ++ AL+ K Sbjct: 179 PKSKLEKCSSMLRTMGEKL--LSPKGPEAVKANGFLNAVYGFKVTAIFLCGLVVTALACK 236
Query: 349 PKRPLSCVHMAEQPTWLDLLQRVQDNVKKLTDKGIEHGKIALLKELDQLRAHTNELYEML 528 +R + V +A+Q W + L +Q VK++TD+ +E+G IA L+EL + A L+E L Sbjct: 237 QRRSSTTVLVAKQYKWSEALISLQLRVKEVTDE-MENGSIAQLEELHNVDASVRGLHEFL 295
Query: 529 DNFLKQGTPIVEADKLS 579 + L ++ ++++ Sbjct: 296 NGHLTDNNFLITQEEIA 312
>tr|A9PCZ4|A9PCZ4_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 354
Score = 58.5 bits (140), Expect = 3e-07 Identities = 45/136 (33%), Positives = 61/136 (44%), Gaps = 1/136 (0%) Frame = +1
Query: 181 KLETCSSMLRRMGEPLPEASPGSKHAASN-ALFNDMYAAKVLAIFVCSVLAVALSVKPKR 357 +LE C S+L + + L P K++A L MY KV +FVCSV A A SV K Sbjct: 163 RLENCKSILENLVDSL--TLPKVKNSAKGKVLMRAMYGVKVQTVFVCSVFAAAFSVNSKN 220
Query: 358 PLSCVHMAEQPTWLDLLQRVQDNVKKLTDKGIEHGKIALLKELDQLRAHTNELYEMLDNF 537 L + + W +Q V + GK LKELD++ N LY M+ + Sbjct: 221 -LIDLDVPNTILWAQAYSDLQTTVNGEIREVFSRGKFTFLKELDEVETVVNNLYPMIQDG 279
Query: 538 LKQGTPIVEADKLSLS 585 + G VEA S S Sbjct: 280 M--GPTEVEAFSSSFS 293
>tr|A9LM04|A9LM04_NICBE Bypass1 OS=Nicotiana benthamiana PE=2 SV=1 Length = 352
Score = 56.2 bits (134), Expect = 1e-06 Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 4/158 (2%) Frame = +1
Query: 121 STEFMHARVE-ENTRHR--EGRSKLETCSSMLRRMGEPLPEASPGSKHAASN-ALFNDMY 288 ST+FM AR + +H +LE C ++L + E L P K++A L + MY Sbjct: 139 STQFMKARSSLDGWKHHINSKNHRLENCFAILDSLSESLN--LPKIKNSAKGKVLMHAMY 196
Query: 289 AAKVLAIFVCSVLAVALSVKPKRPLSCVHMAEQPTWLDLLQRVQDNVKKLTDKGIEHGKI 468 +V+ +F+CS+ AVA S K+ L + + E W + ++D + GK Sbjct: 197 GVRVVTVFICSIFAVAFSGSAKK-LKDIQVHETCLWAEAFVDLRDFISGEIRSIYSGGKF 255
Query: 469 ALLKELDQLRAHTNELYEMLDNFLKQGTPIVEADKLSL 582 LKEL+ + A +L+ + ++ G ++A++L L Sbjct: 256 TALKELEAVDASVKKLFPV----IQDGIDPIDAEQLEL 289
>tr|A7PZL1|A7PZL1_VITVI Chromosome chr15 scaffold_40, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00026918001 PE=4 SV=1 Length = 350
Score = 51.2 bits (121), Expect = 5e-05 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 2/120 (1%) Frame = +1
Query: 181 KLETCSSMLRRMGEP--LPEASPGSKHAASNALFNDMYAAKVLAIFVCSVLAVALSVKPK 354 KL+ C ++L + E LP+ +K L MY +V +FVCSV A A + Sbjct: 163 KLQNCLTILDSLAESINLPKIKNSAK---GKVLMRAMYGVRVGTVFVCSVFAAAFTGSAN 219
Query: 355 RPLSCVHMAEQPTWLDLLQRVQDNVKKLTDKGIEHGKIALLKELDQLRAHTNELYEMLDN 534 + + +H+A+ W + +Q V G++ +LKEL+ + N+LY M+ + Sbjct: 220 KLID-LHVADTFLWSEAFTDLQSYVNVEIRNTFSSGRVTVLKELEAVDTSINKLYPMVQD 278
|