DK958325 |
Clone id |
TST39A01NGRL0030_L08 |
Library |
TST39 |
Length |
632 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_L08. 5' end sequence. |
Accession |
DK958325 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CGAAACTCGTGTAGAGCGCGTTAGCATCGTCCCCTCAGCAAGCGGCCAGCAGAGGAGCTG GTGTCTGTCTCGGGGGATCGTGAAGCAACATAATGGCGATGACCATGAATCCCATGAAGG CTGGTAAGGCTGGTCTTGAGGATGCTCAGGAACCTGTTCATAGAATCCGAATTACTCTGT CATCTAAGAATGTCAAGAATCTCGAAAAAGTGTGTGCCGATCTTGTGAGAGGCGCAAAAG ACAAGAAGCTGAAAGTCAAAGGACCTGTGAGAATGCCCACCAAAGTGTTGCACATTACCA CCCGCAAGTCTCCTTGTGGTGAAGGTACCAACACATGGGACCGATTTGAACTGCGAGTGC ACAAGAGGGTTATTGATCTTCACAGCTCCTCTGAGGTGGTGAAGCAGATTACATCTATTA CCATTGAGCCAGGAGTTGAAGTAGAGGTTACCATAGCAGATTCTTAGTTTGAATGTAGAG GTTACCATAGCAGATTCTTAGTTTGAATGGTCATTGATGTAACATGGAGTCTCTCTGTTT TTCGTGGGAGAAAGAATTTTGAGATTGTTCTACTAGATTTGTTTTACACATAAAAACTTT GCTTTGTGGTTTTCGCTGATTATGAAATATGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P49200 |
Definition |
sp|P49200|RS201_ARATH 40S ribosomal protein S20-1 OS=Arabidopsis thaliana |
Align length |
124 |
Score (bit) |
211.0 |
E-value |
3.0e-54 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TN87 |
Definition |
tr|A9TN87|A9TN87_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
117 |
Score (bit) |
217.0 |
E-value |
4.0e-55 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958325|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_L08, 5' (632 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TN87|A9TN87_PHYPA Predicted protein OS=Physcomitrella paten... 217 4e-55 tr|A9U106|A9U106_PHYPA Predicted protein OS=Physcomitrella paten... 213 6e-54 tr|A9NR88|A9NR88_PICSI Putative uncharacterized protein OS=Picea... 212 1e-53 tr|B3TLT0|B3TLT0_ELAGV Structural constituent of ribosome OS=Ela... 210 5e-53 tr|A9TLE4|A9TLE4_PHYPA Predicted protein OS=Physcomitrella paten... 210 5e-53 tr|A5AJ83|A5AJ83_VITVI Putative uncharacterized protein OS=Vitis... 209 8e-53 tr|A9NLL7|A9NLL7_PICSI Putative uncharacterized protein OS=Picea... 209 1e-52 tr|A9PD23|A9PD23_POPTR Putative uncharacterized protein OS=Popul... 209 1e-52 tr|A2Q4V6|A2Q4V6_MEDTR Ribosomal protein S10, eukaryotic and arc... 206 9e-52 tr|Q8H189|Q8H189_ARATH 40S ribosomal protein S20 OS=Arabidopsis ... 205 2e-51 tr|Q0DEU6|Q0DEU6_ORYSJ Os06g0134000 protein OS=Oryza sativa subs... 205 2e-51 tr|A9PAL8|A9PAL8_POPTR Putative uncharacterized protein OS=Popul... 205 2e-51 tr|A2Y8Y0|A2Y8Y0_ORYSI Putative uncharacterized protein OS=Oryza... 205 2e-51 tr|A4PUT2|A4PUT2_MEDTR Ribosomal protein S10, eukaryotic and arc... 203 6e-51 tr|B4FDT0|B4FDT0_MAIZE 40S ribosomal protein S20 OS=Zea mays PE=... 199 2e-49 tr|Q8LNL2|Q8LNL2_ORYSJ Os10g0170200 protein OS=Oryza sativa subs... 198 3e-49 tr|A2Z5D5|A2Z5D5_ORYSI Putative uncharacterized protein OS=Oryza... 198 3e-49 tr|Q10P27|Q10P27_ORYSJ Os03g0249400 protein OS=Oryza sativa subs... 197 4e-49 tr|B8AK27|B8AK27_ORYSI Putative uncharacterized protein OS=Oryza... 197 4e-49 tr|B6U4I9|B6U4I9_MAIZE 40S ribosomal protein S20 OS=Zea mays PE=... 196 1e-48 tr|B6T6T3|B6T6T3_MAIZE 40S ribosomal protein S20 OS=Zea mays PE=... 194 5e-48 tr|Q5UCF6|Q5UCF6_MAIZE Ribosomal protein S10p/S20e OS=Zea mays P... 191 2e-47 tr|B6T8K2|B6T8K2_MAIZE 40S ribosomal protein S20 OS=Zea mays PE=... 191 2e-47 tr|A4VB16|A4VB16_PLADU Putative uncharacterized protein OS=Platy... 191 2e-47 tr|A4RTY5|A4RTY5_OSTLU Ribosomal protein S20, component of cytos... 191 4e-47 tr|B6SIQ7|B6SIQ7_MAIZE 40S ribosomal protein S20 OS=Zea mays PE=... 189 9e-47 tr|A8E6C3|A8E6C3_9BILA Putative 40S ribosomal protein S20 OS=Spa... 188 2e-46 tr|A8UAG4|A8UAG4_9BILA Putative ribosomal protein S20 OS=Barents... 187 6e-46 tr|Q8MUE5|Q8MUE5_9BIVA Ribosomal protein S20 OS=Chlamys farreri ... 186 1e-45 tr|Q70MN4|Q70MN4_CRAGI Ribosomal protein S20 OS=Crassostrea giga... 185 2e-45
>tr|A9TN87|A9TN87_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_148072 PE=4 SV=1 Length = 119
Score = 217 bits (553), Expect = 4e-55 Identities = 107/117 (91%), Positives = 113/117 (96%) Frame = +3
Query: 111 PMKAGKAGLEDAQEPVHRIRITLSSKNVKNLEKVCADLVRGAKDKKLKVKGPVRMPTKVL 290 P+K GKAG+E+A E VHRIRITLSSKNVKNLEKVCADL++GAKDK+LKVKGPVRMPTKVL Sbjct: 2 PIKPGKAGVEEAIETVHRIRITLSSKNVKNLEKVCADLIKGAKDKRLKVKGPVRMPTKVL 61
Query: 291 HITTRKSPCGEGTNTWDRFELRVHKRVIDLHSSSEVVKQITSITIEPGVEVEVTIAD 461 HITTRKSPCGEGTNTWDRFELRVHKRVIDLHS SEVVKQITSITIEPGVEVEVTIAD Sbjct: 62 HITTRKSPCGEGTNTWDRFELRVHKRVIDLHSPSEVVKQITSITIEPGVEVEVTIAD 118
>tr|A9U106|A9U106_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_154054 PE=4 SV=1 Length = 119
Score = 213 bits (543), Expect = 6e-54 Identities = 105/117 (89%), Positives = 111/117 (94%) Frame = +3
Query: 111 PMKAGKAGLEDAQEPVHRIRITLSSKNVKNLEKVCADLVRGAKDKKLKVKGPVRMPTKVL 290 P+K GK G+E+ E VHRIRITLSSKNVKNLEKVCADL++GAKDK+LKVKGPVRMPTKVL Sbjct: 2 PIKPGKIGVEEPVENVHRIRITLSSKNVKNLEKVCADLIKGAKDKRLKVKGPVRMPTKVL 61
Query: 291 HITTRKSPCGEGTNTWDRFELRVHKRVIDLHSSSEVVKQITSITIEPGVEVEVTIAD 461 HITTRKSPCGEGTNTWDRFELRVHKRVIDLHS SEVVKQITSITIEPGVEVEVTIAD Sbjct: 62 HITTRKSPCGEGTNTWDRFELRVHKRVIDLHSPSEVVKQITSITIEPGVEVEVTIAD 118
>tr|A9NR88|A9NR88_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 122
Score = 212 bits (540), Expect = 1e-53 Identities = 108/122 (88%), Positives = 113/122 (92%) Frame = +3
Query: 99 MTMNPMKAGKAGLEDAQEPVHRIRITLSSKNVKNLEKVCADLVRGAKDKKLKVKGPVRMP 278 M M MK KAGLED QE +HRIRITLSSKNVKNLEKVCADLVRGAKDK+LKVKGPVRMP Sbjct: 1 MAMGMMKPMKAGLEDPQEDLHRIRITLSSKNVKNLEKVCADLVRGAKDKRLKVKGPVRMP 60
Query: 279 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLHSSSEVVKQITSITIEPGVEVEVTIA 458 TKVL+ TTRKSPCGEGTNTWDRFELRVHKR+IDL SSSEVVKQITSITIEPGVEVEVTIA Sbjct: 61 TKVLNHTTRKSPCGEGTNTWDRFELRVHKRIIDLVSSSEVVKQITSITIEPGVEVEVTIA 120
Query: 459 DS 464 D+ Sbjct: 121 DT 122
>tr|B3TLT0|B3TLT0_ELAGV Structural constituent of ribosome OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 122
Score = 210 bits (535), Expect = 5e-53 Identities = 105/122 (86%), Positives = 112/122 (91%) Frame = +3
Query: 99 MTMNPMKAGKAGLEDAQEPVHRIRITLSSKNVKNLEKVCADLVRGAKDKKLKVKGPVRMP 278 M MK K GLE++QE +HRIRITLSSKNVKNLEKVCADLVRGAKDK+L+VKGPVRMP Sbjct: 1 MAFAAMKPAKPGLEESQEQLHRIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
Query: 279 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLHSSSEVVKQITSITIEPGVEVEVTIA 458 TKVLHITTRKSPCGEGTNTWDRFELRVH+RVIDL SS EVVKQITSITIEPGVEVEVTIA Sbjct: 61 TKVLHITTRKSPCGEGTNTWDRFELRVHRRVIDLMSSPEVVKQITSITIEPGVEVEVTIA 120
Query: 459 DS 464 D+ Sbjct: 121 DA 122
>tr|A9TLE4|A9TLE4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_147307 PE=4 SV=1 Length = 118
Score = 210 bits (535), Expect = 5e-53 Identities = 106/117 (90%), Positives = 111/117 (94%), Gaps = 1/117 (0%) Frame = +3
Query: 114 MKAGKAGLEDAQEPVHRIRITLSSKNVKNLEKVCADLVRGAKDKKLKVKGPVRMPTKVLH 293 MK GK G+E+A E VHRIRITLSSKNVKNLEKVCADL++GAKDK+LKVKGPVRMPTKVLH Sbjct: 1 MKPGKVGVEEAVETVHRIRITLSSKNVKNLEKVCADLIKGAKDKRLKVKGPVRMPTKVLH 60
Query: 294 ITTRKSPCGE-GTNTWDRFELRVHKRVIDLHSSSEVVKQITSITIEPGVEVEVTIAD 461 ITTRKSPCGE GTNTWDRFELRVHKRVIDLHS SEVVKQITSITIEPGVEVEVTIAD Sbjct: 61 ITTRKSPCGEAGTNTWDRFELRVHKRVIDLHSPSEVVKQITSITIEPGVEVEVTIAD 117
>tr|A5AJ83|A5AJ83_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002374 PE=4 SV=1 Length = 122
Score = 209 bits (533), Expect = 8e-53 Identities = 105/122 (86%), Positives = 111/122 (90%) Frame = +3
Query: 99 MTMNPMKAGKAGLEDAQEPVHRIRITLSSKNVKNLEKVCADLVRGAKDKKLKVKGPVRMP 278 M MK K GLE+ QE +H+IRITLSSKNVKNLEKVCADLVRGAKDK+L+VKGPVRMP Sbjct: 1 MAYAAMKPTKPGLEEPQEAIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMP 60
Query: 279 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLHSSSEVVKQITSITIEPGVEVEVTIA 458 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL SS +VVKQITSITIEPGVEVEVTIA Sbjct: 61 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 120
Query: 459 DS 464 DS Sbjct: 121 DS 122
>tr|A9NLL7|A9NLL7_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 122
Score = 209 bits (532), Expect = 1e-52 Identities = 106/122 (86%), Positives = 112/122 (91%) Frame = +3
Query: 99 MTMNPMKAGKAGLEDAQEPVHRIRITLSSKNVKNLEKVCADLVRGAKDKKLKVKGPVRMP 278 M M +K KAGLED QE +HRIRITLSSKNVKNLEKVC DLVRGAKDK+LKVKGPVRMP Sbjct: 1 MAMGMIKPMKAGLEDPQEELHRIRITLSSKNVKNLEKVCGDLVRGAKDKRLKVKGPVRMP 60
Query: 279 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLHSSSEVVKQITSITIEPGVEVEVTIA 458 TKVL+ TTRKSPCGEGTNTWDRFELRVHKR+IDL SSSEVVKQITSITIEPGVEVEVTIA Sbjct: 61 TKVLNHTTRKSPCGEGTNTWDRFELRVHKRIIDLVSSSEVVKQITSITIEPGVEVEVTIA 120
Query: 459 DS 464 D+ Sbjct: 121 DT 122
>tr|A9PD23|A9PD23_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 123
Score = 209 bits (531), Expect = 1e-52 Identities = 104/123 (84%), Positives = 113/123 (91%) Frame = +3
Query: 93 MAMTMNPMKAGKAGLEDAQEPVHRIRITLSSKNVKNLEKVCADLVRGAKDKKLKVKGPVR 272 MA MKA K GLE+AQE +H+IRITLSSKNVKNLEKVC DLVRGAKDK+L+VKGPVR Sbjct: 1 MAAAYGAMKAQKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVR 60
Query: 273 MPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLHSSSEVVKQITSITIEPGVEVEVT 452 +PTKVL+ITTRKSPCGEGTNTWDRFELRVHKRVIDL SS++VVKQITSITIEPGVEVEVT Sbjct: 61 IPTKVLNITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVT 120
Query: 453 IAD 461 IAD Sbjct: 121 IAD 123
>tr|A2Q4V6|A2Q4V6_MEDTR Ribosomal protein S10, eukaryotic and archaeal form OS=Medicago truncatula GN=MtrDRAFT_AC157891g29v2 PE=4 SV=1 Length = 122
Score = 206 bits (524), Expect = 9e-52 Identities = 102/122 (83%), Positives = 112/122 (91%) Frame = +3
Query: 99 MTMNPMKAGKAGLEDAQEPVHRIRITLSSKNVKNLEKVCADLVRGAKDKKLKVKGPVRMP 278 M MK K GLE++QE +H+IRITLSSK+VKNLEKVCADLVRGAKDK L+VKGPVRMP Sbjct: 1 MAYAAMKPTKPGLEESQEQIHKIRITLSSKHVKNLEKVCADLVRGAKDKHLRVKGPVRMP 60
Query: 279 TKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLHSSSEVVKQITSITIEPGVEVEVTIA 458 TKVLHITTRK+PCGEGTNTWDRFELRVHKRVIDL+SS +VVKQITSITIEPGVEVEVTIA Sbjct: 61 TKVLHITTRKTPCGEGTNTWDRFELRVHKRVIDLYSSPDVVKQITSITIEPGVEVEVTIA 120
Query: 459 DS 464 D+ Sbjct: 121 DA 122
>tr|Q8H189|Q8H189_ARATH 40S ribosomal protein S20 OS=Arabidopsis thaliana GN=At5g62300 PE=4 SV=1 Length = 117
Score = 205 bits (522), Expect = 2e-51 Identities = 102/117 (87%), Positives = 109/117 (93%) Frame = +3
Query: 114 MKAGKAGLEDAQEPVHRIRITLSSKNVKNLEKVCADLVRGAKDKKLKVKGPVRMPTKVLH 293 MK GKAGLE+ E +H+IRITLSSKNVKNLEKVC DLVRGAKDK+L+VKGPVRMPTKVL Sbjct: 1 MKPGKAGLEEPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLK 60
Query: 294 ITTRKSPCGEGTNTWDRFELRVHKRVIDLHSSSEVVKQITSITIEPGVEVEVTIADS 464 ITTRK+PCGEGTNTWDRFELRVHKRVIDL SS +VVKQITSITIEPGVEVEVTIADS Sbjct: 61 ITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 117
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