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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958257
Clone id TST39A01NGRL0030_I12
Library
Length 638
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_I12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
CATGGTTGTAAAGCCAGGAAGGAAGGGTTCAGAACCCAGTGCAGGTGTTAAAGGGCTAAA
TCTGGGTGCTGGATTGTTGTCAAAATCTGGGAGAGGGAATAGCCTTGATTCGGGCACAAA
GAAATCGCTGTCCCAGTTGAAGTCCTCTCAGCAGAAGCAAGCTGCAAATAGAGCTCAAGT
ATTATCTGCAATTGGTGTTCAAGGGTTGCTTTATGATCCATCTTCTTCTCAGGGAGGGTT
GGTAAGAATGGCCTCTTTGGATCTCGGTTTCCTTGCGCAGGCTACCAATTCTTCCAAAGG
CTCTCCTGGAGCACCTAGCACCAAACTTATAGATGATCTTGCCAGGTTCAACATAAACAG
AACTGTTAAGCTGGAGGATGACCTACTATTGCCTGTAGCTGCACTAGGAGAATGTATGAG
GATTCAAGGCTCTCTGCAAGAACCCGTTTCAAACCCTAATGTTGCTGTTGGGGATGACGG
AAAGGAGGGGGGCAGCATCAGTTGCCCAAGTAATATCAGAGGGCCAGTATACATGCAAGG
CTTAGTGGAGGAGGCAATGAAGCATGAAGATGACCGAATGCAAGAGGGCAATGTTTCCTA
TGGCATGGCATCTAGTTTGTTTGCCTCGCCTAATGTGC
■■Homology search results ■■ -
sp_hit_id Q2KIT5
Definition sp|Q2KIT5|CREL2_BOVIN Cysteine-rich with EGF-like domain protein 2 OS=Bos taurus
Align length 41
Score (bit) 31.2
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958257|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_I12, 5'
         (638 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2KIT5|CREL2_BOVIN Cysteine-rich with EGF-like domain protein...    31   4.7  
sp|Q6DEY8|WDR67_XENTR WD repeat-containing protein 67 OS=Xenopus...    31   6.2  

>sp|Q2KIT5|CREL2_BOVIN Cysteine-rich with EGF-like domain protein 2
           OS=Bos taurus GN=CRELD2 PE=2 SV=1
          Length = 351

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 410 ECMRIQGSLQEPVSNPNVAVGDDGKEG-GSISCPSNIRGPV 529
           +C+  QG  + P S     VGD  +EG GS  C    +GP+
Sbjct: 133 DCLACQGGSERPCSGNGHCVGDGTREGDGSCQCHLGYQGPL 173


>sp|Q6DEY8|WDR67_XENTR WD repeat-containing protein 67 OS=Xenopus
           tropicalis GN=wdr67 PE=2 SV=1
          Length = 1088

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = +2

Query: 524 PVYMQGLVEEAMKHEDDRMQEGNVSYGMASSLFASP 631
           P+ + G+VE  + H D  + +  ++YG+ S ++A P
Sbjct: 546 PINILGMVENLLAHHDKELLQHFINYGVTSQVYAWP 581
tr_hit_id A8A8E1
Definition tr|A8A8E1|A8A8E1_IGNH4 Beta-lactamase domain protein OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)
Align length 89
Score (bit) 36.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958257|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_I12, 5'
         (638 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8A8E1|A8A8E1_IGNH4 Beta-lactamase domain protein OS=Ignicocc...    36   1.7  
tr|A7HCY3|A7HCY3_ANADF Tetratricopeptide TPR_2 repeat protein OS...    35   3.8  
tr|B1MX53|B1MX53_LEUCK Predicted membrane protein OS=Leuconostoc...    35   5.0  
tr|B0UMF8|B0UMF8_METS4 Molybdopterin dehydrogenase FAD-binding O...    35   5.0  
tr|B5IRM6|B5IRM6_9EURY Thiamine pyrophosphate enzyme, C-terminal...    35   5.0  
tr|B8C922|B8C922_THAPS Predicted protein OS=Thalassiosira pseudo...    34   6.5  
tr|A3BV31|A3BV31_ORYSJ Ubiquitin carboxyl-terminal hydrolase OS=...    34   8.6  
tr|A2YXC0|A2YXC0_ORYSI Ubiquitin carboxyl-terminal hydrolase OS=...    34   8.6  

>tr|A8A8E1|A8A8E1_IGNH4 Beta-lactamase domain protein OS=Ignicoccus
           hospitalis (strain KIN4/I / DSM 18386 / JCM 14125)
           GN=Igni_0009 PE=4 SV=1
          Length = 652

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 26/89 (29%), Positives = 43/89 (48%)
 Frame = +2

Query: 290 SSKGSPGAPSTKLIDDLARFNINRTVKLEDDLLLPVAALGECMRIQGSLQEPVSNPNVAV 469
           S+ G+   P  +L + L    IN+T++    +L+PV A+G    I   L + V N  +  
Sbjct: 378 STYGTQDLPPRELAERLLIDIINKTIEKGGFVLIPVLAVGRAQEILLLLVDAVQNKLI-- 435

Query: 470 GDDGKEGGSISCPSNIRGPVYMQGLVEEA 556
                EGG++        P+Y+ G+V EA
Sbjct: 436 --KSPEGGAV--------PIYLDGMVYEA 454


>tr|A7HCY3|A7HCY3_ANADF Tetratricopeptide TPR_2 repeat protein
           OS=Anaeromyxobacter sp. (strain Fw109-5) GN=Anae109_2377
           PE=3 SV=1
          Length = 463

 Score = 35.0 bits (79), Expect = 3.8
 Identities = 18/46 (39%), Positives = 27/46 (58%)
 Frame = +2

Query: 218 PSSSQGGLVRMASLDLGFLAQATNSSKGSPGAPSTKLIDDLARFNI 355
           P   Q GL RM + DLG  A+A  ++  S G+PS  L+  +AR+ +
Sbjct: 78  PDPFQEGLRRMDAEDLGGAARAFEAAHASEGSPSAALLAGIARYEL 123


>tr|B1MX53|B1MX53_LEUCK Predicted membrane protein OS=Leuconostoc
           citreum (strain KM20) GN=LCK_00272 PE=4 SV=1
          Length = 869

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
 Frame = +2

Query: 227 SQGGLVRMASLDLGFLAQATNSSKGSPGAPSTKLI---DDLARFNI----NRTVKLEDDL 385
           S G L+  A LD+ ++    N  K  PG PST LI    D +++++    ++T   E+  
Sbjct: 536 SNGSLLSDALLDMKYIVAPNNQDKHLPGDPSTHLIGYRPDTSKYHLKAVTDKTSVWENPY 595

Query: 386 LLPV--AALGECMRIQGSLQEPVSNPN 460
            LP+  AA    ++    L  P+ N N
Sbjct: 596 ALPLAFAASDTVLKTAMLLNNPMQNQN 622


>tr|B0UMF8|B0UMF8_METS4 Molybdopterin dehydrogenase FAD-binding
           OS=Methylobacterium sp. (strain 4-46) GN=M446_2670 PE=3
           SV=1
          Length = 337

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +2

Query: 245 RMASLDLGFLAQATNSSKGSPGAP----STKLIDDLARFNINRTVKLEDDLLLPVAALGE 412
           R A +  G +A+A ++    P A      T L+D L ++N+ R  +L D   LP+A   E
Sbjct: 3   RFAYMRAGSVAEAVSALAADPAARIIAGGTNLVD-LMKYNVERPDRLIDITRLPLA---E 58

Query: 413 CMRIQGSLQEPVSNPNVAVGDD 478
              +QG L+     PN AV +D
Sbjct: 59  IEPLQGGLRIGALVPNSAVAED 80


>tr|B5IRM6|B5IRM6_9EURY Thiamine pyrophosphate enzyme, C-terminal
           TPP binding domain protein OS=Thermococcus barophilus MP
           GN=TERMP_1249 PE=4 SV=1
          Length = 616

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 8/95 (8%)
 Frame = +2

Query: 266 GFLAQATNSSKGSPGAPSTKLIDDLARFN--------INRTVKLEDDLLLPVAALGECMR 421
           G L    + + G PG PST++I+ +AR N         N  V LE+   +  A L   + 
Sbjct: 14  GALESGISFATGYPGTPSTEVIETIARLNPEVFAEWAPNEKVALEEAAGVSYAGLRSLVT 73

Query: 422 IQGSLQEPVSNPNVAVGDDGKEGGSISCPSNIRGP 526
           ++       ++P +++   G EGG +   ++  GP
Sbjct: 74  MKCVGLNVAADPLMSLAYSGVEGGLVILVADDPGP 108


>tr|B8C922|B8C922_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_8288 PE=4 SV=1
          Length = 665

 Score = 34.3 bits (77), Expect = 6.5
 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 389 LPVAALGECMRIQGSLQEPVSNPNVAVGDD--GKEGGSISCPSNIRG 523
           LP+AAL  C+   G L    S   +  GD+  G +GGS+  PS IRG
Sbjct: 32  LPIAALILCIWYMGHLHHLASLSLIGCGDNHSGSDGGSLMSPSLIRG 78


>tr|A3BV31|A3BV31_ORYSJ Ubiquitin carboxyl-terminal hydrolase
           OS=Oryza sativa subsp. japonica GN=OsJ_026903 PE=3 SV=1
          Length = 794

 Score = 33.9 bits (76), Expect = 8.6
 Identities = 29/100 (29%), Positives = 41/100 (41%)
 Frame = -3

Query: 519 LILLGQLMLPPSFPSSPTATLGFETGSCREP*ILIHXXXXXXXXXXXXXSLTVLFMLNLA 340
           L++LG+L      P +P  TLG          IL                L + ++L   
Sbjct: 211 LLVLGKLRARMLGPDTPLGTLGT---------ILYDLFDQTYGVNNTGGLLDMTWLLAYV 261

Query: 339 RSSISLVLGAPGEPLEELVACARKPRSKEAILTNPP*EED 220
           R S S  +GA  +   EL+ C RK   +E   TNPP  +D
Sbjct: 262 RKSDSRFIGAFMQDNHELLCCLRKKLDEEDRGTNPPNMQD 301


>tr|A2YXC0|A2YXC0_ORYSI Ubiquitin carboxyl-terminal hydrolase
           OS=Oryza sativa subsp. indica GN=OsI_29986 PE=3 SV=1
          Length = 794

 Score = 33.9 bits (76), Expect = 8.6
 Identities = 29/100 (29%), Positives = 41/100 (41%)
 Frame = -3

Query: 519 LILLGQLMLPPSFPSSPTATLGFETGSCREP*ILIHXXXXXXXXXXXXXSLTVLFMLNLA 340
           L++LG+L      P +P  TLG          IL                L + ++L   
Sbjct: 211 LLVLGKLRARMLGPDTPLGTLGT---------ILYDLFDQTYGVNNTGGLLDMTWLLAYV 261

Query: 339 RSSISLVLGAPGEPLEELVACARKPRSKEAILTNPP*EED 220
           R S S  +GA  +   EL+ C RK   +E   TNPP  +D
Sbjct: 262 RKSDSRFIGAFMQDNHELLCCLRKKLDEEDRGTNPPNMQD 301