NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958200
Clone id TST39A01NGRL0030_G02
Library
Length 620
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_G02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGCGACATCGCCACTCCTGTAGCCAGGGATCCGAGAAAGGCGAACATTTTGACCAGGCAA
AAAAGAAAGGAGGATGATGGATGACGTATCGTCGTCTTCTTCCTTTTGATGGCAGGCTGC
CCTGCCCTAAGTGCCACGGGTGCAAAACATATAGACGAGGGCAGGCTGCCAGCAAGCAAG
CTGTTTTGTAGTTTTGATTGTGGAGAGTGAGACGAGAGGAAGCTTCTGATGAGGTGGAGC
CTGGAGGCAGTGCAGCGCAGCGGAGGCGGGTTTCCTTCGATGATGGTGGATTATCTATCT
GCCAACAACTTTTCACAGGCCCTCGGCGAAGCTTTTTGCGTCACACAGTGGAATCTTTGA
AGCTTCTATAGCCTACGCAACGGCTGCCCCAACCACCACCACCACCATTATCTTCTCCTG
CAAGTTTTGAGAACTCTTGTAAATTCTTTCTTGCAATCGTTTTTGGTTAAGAAACCAGCA
CAAGGCTATCTGCGGCATGCCGGGTCTTCCTGTTTATCATGTTAGCAAAGCTGATACGCT
TCAATCTGATGCTCATAGAGTGCCCTCACCCTCTGAAGTTGACCACCTACCCCTGCAGTC
TAACAATGATCCTGCTGGTG
■■Homology search results ■■ -
sp_hit_id Q9EPQ2
Definition sp|Q9EPQ2|RPGR1_MOUSE X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 OS=Mus musculus
Align length 72
Score (bit) 32.7
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958200|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_G02, 5'
         (620 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9EPQ2|RPGR1_MOUSE X-linked retinitis pigmentosa GTPase regul...    33   1.6  
sp|Q6IUP1|SOLH1_MOUSE Spermatogenesis- and oogenesis-specific ba...    31   4.5  
sp|Q9RFD5|BCHH_RHOS4 Magnesium-chelatase subunit H OS=Rhodobacte...    31   5.9  
sp|Q7Z4V0|ZN438_HUMAN Zinc finger protein 438 OS=Homo sapiens GN...    30   7.7  

>sp|Q9EPQ2|RPGR1_MOUSE X-linked retinitis pigmentosa GTPase
           regulator-interacting protein 1 OS=Mus musculus
           GN=Rpgrip1 PE=1 SV=1
          Length = 1331

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
 Frame = -1

Query: 245 SRLHLIRSFLSSHS-PQSKLQNSLLAGSLPSSICFAPVALRAGQPAIKRKKTTIRHPSSS 69
           SR+  +   L SH  P S+    +  G+LP S+C  P+A   G   +     ++ HPS +
Sbjct: 534 SRIKQLEGILRSHGLPTSEQLKDVAYGTLPPSLCLEPLAAHRGDDEV---DMSLLHPSEN 590

Query: 68  FLFCLVKMFAFL 33
            LF L    AFL
Sbjct: 591 -LFELHVHQAFL 601


>sp|Q6IUP1|SOLH1_MOUSE Spermatogenesis- and oogenesis-specific basic
           helix-loop-helix-containing protein 1 OS=Mus musculus
           GN=Sohlh1 PE=1 SV=1
          Length = 357

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -1

Query: 212 SHSPQSKLQNSLLAGSLPSSICFAPVALRAGQPAIKRKKTTIR 84
           S +PQ + Q+SL   S  S++C APVA     P+++R   + R
Sbjct: 22  SKTPQPETQDSLQTSSQSSALCTAPVAAANLGPSLRRNVVSER 64


>sp|Q9RFD5|BCHH_RHOS4 Magnesium-chelatase subunit H OS=Rhodobacter
           sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
           158) GN=bchH PE=3 SV=1
          Length = 1193

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 449 SCNRFWLRNQHKAICGMPGLPVYHVSKADTLQSDAHRVPSPS 574
           S NR W R   KA    P + +YH S  D + +D + +P P+
Sbjct: 200 SANRAWHRIHAKAPIEYPEVGLYHPSLPDRITTDPNDLPRPA 241


>sp|Q7Z4V0|ZN438_HUMAN Zinc finger protein 438 OS=Homo sapiens
           GN=ZNF438 PE=2 SV=1
          Length = 828

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = -2

Query: 238 STSSEASSRLTLHNQNYKTACLLAACP--RLYVLHPWHLGQGSLPSKGRRRR 89
           + +++ +SRL +   + ++AC  A CP  +L + H   L  G+   KGR+R+
Sbjct: 337 NAATKVASRLPVPQVSQQSACESAFCPPTKLDLNHKTKLNSGAAKRKGRKRK 388
tr_hit_id Q5FQU7
Definition tr|Q5FQU7|Q5FQU7_GLUOX Putative chromosome segregation SMC protein OS=Gluconobacter oxydans
Align length 79
Score (bit) 34.7
E-value 4.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958200|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_G02, 5'
         (620 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5FQU7|Q5FQU7_GLUOX Putative chromosome segregation SMC prote...    35   4.7  

>tr|Q5FQU7|Q5FQU7_GLUOX Putative chromosome segregation SMC protein
           OS=Gluconobacter oxydans GN=GOX1506 PE=4 SV=1
          Length = 656

 Score = 34.7 bits (78), Expect = 4.7
 Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
 Frame = -2

Query: 277 KETRLRCAALPPGS----TSSEASSRLTLHNQNYKTAC-LLAACPRLYVLHPWHLGQGSL 113
           ++T +R  +L PG     T   +SS    H     T C LL AC          LG+   
Sbjct: 38  RQTVIRDISLKPGLNIIWTPDMSSSEALAHGSGKTTFCRLLRAC----------LGEQGF 87

Query: 112 PSKGRRRRYVIHHPPFFFA 56
            +KG+R R V H P  FFA
Sbjct: 88  ATKGQRERLVSHLPDGFFA 106