DK958197 |
Clone id |
TST39A01NGRL0030_F23 |
Library |
TST39 |
Length |
609 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_F23. 5' end sequence. |
Accession |
DK958197 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
ACTTACGAAGCTTCTCCCGCCATCGCCAGATACCTCTACAGAGATGCCTCTCCCGCCATA GCCACACGCCCTCGTGTGGAAACCCTCGCCCCTCTTACCTTTCCCTGCCCATCTTGCTCC ACCCGATCGGTGATCTCATACCTCGCCTTGCCCTAAATTTTTGAGCGCCTGTGTCTGCAT CGTAAGTTTTTTTCTGCGATGTCCCGTCGGTGCTCTCACTGCGGCCACAACGGTCATAAT TCGCGGACTTGTCTGGATATGAAAGCAGGTTTCAAACTCTTTGGTGTGCGCCTCGCTGCA GACTCGCTCCCCTCAGGGGCTGCTCCTTCAGCAGAGTCTTCATCTTCTTCATCCACTATC ATGCGGAAGAGCTTCAGTATGGGGAACTTGTGTAATTATGGCTCCCCTGATGGTGCAGCA TCCCCTCCTCTCTCTGCCTCTCCTGTTGAGCAGCCTGACCTGGGTGATGCTGTTGAGGGA TATGCATCTGATGATCTCGTGCATGCCAGTAGCAATCCTCGTGAAAGGAAAAAAGGAATA CCTTGGACTGAAGAGGAGCATCGGTCGTTCTTGATCGGGCTTCAAAAGCTGGGCAAGGGT GATTGGCGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q54Z40 |
Definition |
sp|Q54Z40|MYBH_DICDI Myb-like protein H OS=Dictyostelium discoideum |
Align length |
35 |
Score (bit) |
36.2 |
E-value |
0.14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SEH9 |
Definition |
tr|A9SEH9|A9SEH9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
137 |
Score (bit) |
131.0 |
E-value |
3.0e-29 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958197|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_F23, 5' (609 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SEH9|A9SEH9_PHYPA Predicted protein OS=Physcomitrella paten... 131 3e-29 tr|Q41240|Q41240_SOLTU MybSt1 OS=Solanum tuberosum GN=mybSt1 PE=... 127 4e-28 tr|A9T9G5|A9T9G5_PHYPA Predicted protein OS=Physcomitrella paten... 127 4e-28 tr|A7R361|A7R361_VITVI Chromosome undetermined scaffold_485, who... 127 7e-28 tr|A7R1J4|A7R1J4_VITVI Chromosome undetermined scaffold_359, who... 127 7e-28 tr|A9SL32|A9SL32_PHYPA Predicted protein OS=Physcomitrella paten... 126 9e-28 tr|A9SL31|A9SL31_PHYPA Predicted protein (Fragment) OS=Physcomit... 126 9e-28 tr|A9SCQ4|A9SCQ4_PHYPA Predicted protein OS=Physcomitrella paten... 124 3e-27 tr|Q9AUT3|Q9AUT3_ORYSA Putative Myb-related protein OS=Oryza sat... 123 1e-26 tr|Q7XC57|Q7XC57_ORYSJ Myb transcription factor OS=Oryza sativa ... 123 1e-26 tr|Q0PJJ8|Q0PJJ8_SOYBN MYB transcription factor MYB93 OS=Glycine... 123 1e-26 tr|B6TCK0|B6TCK0_MAIZE ZmMybst1 OS=Zea mays PE=2 SV=1 123 1e-26 tr|B4FU55|B4FU55_MAIZE Putative uncharacterized protein OS=Zea m... 123 1e-26 tr|A9NV60|A9NV60_PICSI Putative uncharacterized protein OS=Picea... 123 1e-26 tr|Q8H1D0|Q8H1D0_ORYSJ Transcription factor MYBS3 OS=Oryza sativ... 122 2e-26 tr|Q9LVS0|Q9LVS0_ARATH Myb-related transcription activator-like ... 121 3e-26 tr|Q0PJJ7|Q0PJJ7_SOYBN MYB transcription factor MYB180 OS=Glycin... 121 3e-26 tr|Q2A9N2|Q2A9N2_BRAOL Myb family transcription factor OS=Brassi... 120 6e-26 tr|B8LRD4|B8LRD4_PICSI Putative uncharacterized protein OS=Picea... 119 2e-25 tr|Q14SM5|Q14SM5_HORVU Transcription factor MybS3 (Mybst1 protei... 117 7e-25 tr|B8LLJ2|B8LLJ2_PICSI Putative uncharacterized protein OS=Picea... 115 2e-24 tr|Q2A9C4|Q2A9C4_BRAOL Myb family transcription factor OS=Brassi... 113 8e-24 tr|A5AS47|A5AS47_VITVI Putative uncharacterized protein OS=Vitis... 113 8e-24 tr|B7FK57|B7FK57_MEDTR Putative uncharacterized protein OS=Medic... 109 1e-22 tr|A5C631|A5C631_VITVI Putative uncharacterized protein (Chromos... 109 1e-22 tr|Q2LMD7|Q2LMD7_MALDO MYBR2 OS=Malus domestica PE=2 SV=1 108 3e-22 tr|Q0PJI4|Q0PJI4_SOYBN MYB transcription factor MYB138 OS=Glycin... 108 3e-22 tr|Q2A9A6|Q2A9A6_BRAOL Myb family transcription factor OS=Brassi... 107 4e-22 tr|Q0PJL8|Q0PJL8_SOYBN MYB transcription factor MYB52 OS=Glycine... 107 4e-22 tr|A9PGA2|A9PGA2_POPTR Putative uncharacterized protein OS=Popul... 107 4e-22
>tr|A9SEH9|A9SEH9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_78294 PE=4 SV=1 Length = 317
Score = 131 bits (330), Expect = 3e-29 Identities = 70/137 (51%), Positives = 80/137 (58%) Frame = +1
Query: 199 MSRRCSHCGHNGHNSRTCLDMKAGFKLFGVRLAADXXXXXXXXXXXXXXXXXXXXXXXXX 378 M+R CSHCGHNGHNSRTC D G +LFGVRL Sbjct: 1 MARGCSHCGHNGHNSRTCPDR--GVRLFGVRLT------------------DGVMRKSVS 40
Query: 379 MGNLCNYGSPDGAASPPLSASPVEQPDLGDAVEGYASDDLVHASSNPRERKKGIPWTEEE 558 MGNL +Y SP+ +SPP + G +GY SD LV S+N RERKKG+PWTEEE Sbjct: 41 MGNLSHYASPNNPSSPP------SHSESGAGGDGYVSDGLVQTSNNTRERKKGVPWTEEE 94
Query: 559 HRSFLIGLQKLGKGDWR 609 HR FL+GLQKLGKGDWR Sbjct: 95 HRLFLLGLQKLGKGDWR 111
>tr|Q41240|Q41240_SOLTU MybSt1 OS=Solanum tuberosum GN=mybSt1 PE=2 SV=1 Length = 342
Score = 127 bits (320), Expect = 4e-28 Identities = 72/145 (49%), Positives = 84/145 (57%), Gaps = 8/145 (5%) Frame = +1
Query: 199 MSRRCSHCGHNGHNSRTCLDMKAGFKLFGVRLAADXXXXXXXXXXXXXXXXXXXXXXXXX 378 M+RRCSHC NGHNSRTC + G KLFGVRL Sbjct: 1 MTRRCSHCSTNGHNSRTCPNR--GVKLFGVRLT------------------DGLIRKSAS 40
Query: 379 MGNLCNYGSPDGAASPPLSA----SPVEQPDL----GDAVEGYASDDLVHASSNPRERKK 534 MGNL ++ S G S PL+ SP + PD G + +GYAS+D V SS+ RERKK Sbjct: 41 MGNLTHFASGSGGGSTPLNGVVHDSPGDTPDHPAVGGGSADGYASEDFVAGSSSSRERKK 100
Query: 535 GIPWTEEEHRSFLIGLQKLGKGDWR 609 G+PWTEEEHR FL+GLQKLGKGDWR Sbjct: 101 GVPWTEEEHRMFLLGLQKLGKGDWR 125
>tr|A9T9G5|A9T9G5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_168779 PE=4 SV=1 Length = 318
Score = 127 bits (320), Expect = 4e-28 Identities = 69/137 (50%), Positives = 78/137 (56%) Frame = +1
Query: 199 MSRRCSHCGHNGHNSRTCLDMKAGFKLFGVRLAADXXXXXXXXXXXXXXXXXXXXXXXXX 378 M+R CSHCGHNGHNSRTC D G +LFGVRL Sbjct: 1 MARGCSHCGHNGHNSRTCPDR--GVRLFGVRLT------------------DGVMRKSVS 40
Query: 379 MGNLCNYGSPDGAASPPLSASPVEQPDLGDAVEGYASDDLVHASSNPRERKKGIPWTEEE 558 MGNL +Y P+ SPP + G +GY SD LV S+N RERKKG+PWTEEE Sbjct: 41 MGNLSHYIGPNNPPSPP------SHSESGAGGDGYVSDGLVQTSNNTRERKKGVPWTEEE 94
Query: 559 HRSFLIGLQKLGKGDWR 609 HR FL+GLQKLGKGDWR Sbjct: 95 HRLFLLGLQKLGKGDWR 111
>tr|A7R361|A7R361_VITVI Chromosome undetermined scaffold_485, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00013475001 PE=4 SV=1 Length = 335
Score = 127 bits (318), Expect = 7e-28 Identities = 73/142 (51%), Positives = 82/142 (57%), Gaps = 5/142 (3%) Frame = +1
Query: 199 MSRRCSHCGHNGHNSRTCLDMKAGFKLFGVRLAADXXXXXXXXXXXXXXXXXXXXXXXXX 378 M+RRCSHC HNGHNSRTC + G K+FGVRL Sbjct: 1 MTRRCSHCSHNGHNSRTCPNR--GVKIFGVRLT------------------DGLIRKSAS 40
Query: 379 MGNLCNY-GSPDG----AASPPLSASPVEQPDLGDAVEGYASDDLVHASSNPRERKKGIP 543 MGNL +Y GS G S S SP E P+ G A +GYAS+ V SS+ RERKKG P Sbjct: 41 MGNLSHYAGSTSGHHQNGVSGNNSVSPGETPEHGAAADGYASEGFVPGSSSSRERKKGTP 100
Query: 544 WTEEEHRSFLIGLQKLGKGDWR 609 WTEEEHR FL+GLQKLGKGDWR Sbjct: 101 WTEEEHRMFLLGLQKLGKGDWR 122
>tr|A7R1J4|A7R1J4_VITVI Chromosome undetermined scaffold_359, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00012218001 PE=4 SV=1 Length = 345
Score = 127 bits (318), Expect = 7e-28 Identities = 73/142 (51%), Positives = 82/142 (57%), Gaps = 5/142 (3%) Frame = +1
Query: 199 MSRRCSHCGHNGHNSRTCLDMKAGFKLFGVRLAADXXXXXXXXXXXXXXXXXXXXXXXXX 378 M+RRCSHC HNGHNSRTC + G K+FGVRL Sbjct: 1 MTRRCSHCSHNGHNSRTCPNR--GVKIFGVRLT------------------DGLIRKSAS 40
Query: 379 MGNLCNY-GSPDG----AASPPLSASPVEQPDLGDAVEGYASDDLVHASSNPRERKKGIP 543 MGNL +Y GS G S S SP E P+ G A +GYAS+ V SS+ RERKKG P Sbjct: 41 MGNLSHYAGSTSGHHQNGVSGNNSVSPGETPEHGAAADGYASEGFVPGSSSSRERKKGTP 100
Query: 544 WTEEEHRSFLIGLQKLGKGDWR 609 WTEEEHR FL+GLQKLGKGDWR Sbjct: 101 WTEEEHRMFLLGLQKLGKGDWR 122
>tr|A9SL32|A9SL32_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_131614 PE=4 SV=1 Length = 187
Score = 126 bits (317), Expect = 9e-28 Identities = 70/137 (51%), Positives = 80/137 (58%) Frame = +1
Query: 199 MSRRCSHCGHNGHNSRTCLDMKAGFKLFGVRLAADXXXXXXXXXXXXXXXXXXXXXXXXX 378 MSRRCSHCG NGHNSRTC + G +LFGVRL Sbjct: 1 MSRRCSHCGLNGHNSRTCPER--GVRLFGVRLTDSVSSTNMRKSVS-------------- 44
Query: 379 MGNLCNYGSPDGAASPPLSASPVEQPDLGDAVEGYASDDLVHASSNPRERKKGIPWTEEE 558 M NL +Y + ASPP EQ + G A +GY SD LV S+N RERKKG+PWTE+E Sbjct: 45 MNNLSHYSNVHNPASPP------EQWESGAAPDGYVSDGLVQTSNNARERKKGVPWTEDE 98
Query: 559 HRSFLIGLQKLGKGDWR 609 HR FL+GLQKLGKGDWR Sbjct: 99 HRLFLLGLQKLGKGDWR 115
>tr|A9SL31|A9SL31_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_17324 PE=4 SV=1 Length = 156
Score = 126 bits (317), Expect = 9e-28 Identities = 70/137 (51%), Positives = 80/137 (58%) Frame = +1
Query: 199 MSRRCSHCGHNGHNSRTCLDMKAGFKLFGVRLAADXXXXXXXXXXXXXXXXXXXXXXXXX 378 MSRRCSHCG NGHNSRTC + G +LFGVRL Sbjct: 1 MSRRCSHCGLNGHNSRTCPER--GVRLFGVRLT--------------DGVSSTNMRKSVS 44
Query: 379 MGNLCNYGSPDGAASPPLSASPVEQPDLGDAVEGYASDDLVHASSNPRERKKGIPWTEEE 558 M NL +Y + ASPP EQ + G A +GY SD LV S+N RERKKG+PWTE+E Sbjct: 45 MNNLSHYSNVHNPASPP------EQWESGAAPDGYVSDGLVQTSNNARERKKGVPWTEDE 98
Query: 559 HRSFLIGLQKLGKGDWR 609 HR FL+GLQKLGKGDWR Sbjct: 99 HRLFLLGLQKLGKGDWR 115
>tr|A9SCQ4|A9SCQ4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_77599 PE=4 SV=1 Length = 694
Score = 124 bits (312), Expect = 3e-27 Identities = 70/137 (51%), Positives = 78/137 (56%) Frame = +1
Query: 199 MSRRCSHCGHNGHNSRTCLDMKAGFKLFGVRLAADXXXXXXXXXXXXXXXXXXXXXXXXX 378 MSRRCSHCG NGHNSRTC D G +LFGVRL Sbjct: 153 MSRRCSHCGLNGHNSRTCPDR--GVRLFGVRLT--------------DGISSMNMRKSVS 196
Query: 379 MGNLCNYGSPDGAASPPLSASPVEQPDLGDAVEGYASDDLVHASSNPRERKKGIPWTEEE 558 M NL +Y S S SP E + G A +GY SD LV S+N RERKKG+PWTE+E Sbjct: 197 MNNLSHYTSTHN------SPSPSEHSESGAAPDGYVSDGLVQTSNNARERKKGVPWTEDE 250
Query: 559 HRSFLIGLQKLGKGDWR 609 HR FL+GLQKLGKGDWR Sbjct: 251 HRLFLLGLQKLGKGDWR 267
>tr|Q9AUT3|Q9AUT3_ORYSA Putative Myb-related protein OS=Oryza sativa GN=OSJNBb0089A17.8 PE=4 SV=1 Length = 318
Score = 123 bits (308), Expect = 1e-26 Identities = 71/139 (51%), Positives = 81/139 (58%), Gaps = 2/139 (1%) Frame = +1
Query: 199 MSRRCSHCGHNGHNSRTCLDMKAGFKLFGVRLAADXXXXXXXXXXXXXXXXXXXXXXXXX 378 M+RRCSHC HNGHNSRTC + G K+FGVRL Sbjct: 1 MTRRCSHCSHNGHNSRTCPNR--GVKIFGVRLT------------------DGSIRKSAS 40
Query: 379 MGNLCNYGSPDGAASPPLSASPVEQPDLGD-AVEGYASDDLVHASSNP-RERKKGIPWTE 552 MGNL S G+ S ASP + PD A +GYASDD V SS+ R+RKKG+PWTE Sbjct: 41 MGNLSLLSSAAGSTSG--GASPADGPDAAPTAADGYASDDFVQGSSSATRDRKKGVPWTE 98
Query: 553 EEHRSFLIGLQKLGKGDWR 609 EEHR FL+GLQKLGKGDWR Sbjct: 99 EEHRRFLLGLQKLGKGDWR 117
>tr|Q7XC57|Q7XC57_ORYSJ Myb transcription factor OS=Oryza sativa subsp. japonica GN=LOC_Os10g41200 PE=2 SV=1 Length = 318
Score = 123 bits (308), Expect = 1e-26 Identities = 71/139 (51%), Positives = 81/139 (58%), Gaps = 2/139 (1%) Frame = +1
Query: 199 MSRRCSHCGHNGHNSRTCLDMKAGFKLFGVRLAADXXXXXXXXXXXXXXXXXXXXXXXXX 378 M+RRCSHC HNGHNSRTC + G K+FGVRL Sbjct: 1 MTRRCSHCSHNGHNSRTCPNR--GVKIFGVRLT------------------DGSIRKSAS 40
Query: 379 MGNLCNYGSPDGAASPPLSASPVEQPDLGD-AVEGYASDDLVHASSNP-RERKKGIPWTE 552 MGNL S G+ S ASP + PD A +GYASDD V SS+ R+RKKG+PWTE Sbjct: 41 MGNLSLLSSAAGSTSG--GASPADGPDAAPTAADGYASDDFVQGSSSATRDRKKGVPWTE 98
Query: 553 EEHRSFLIGLQKLGKGDWR 609 EEHR FL+GLQKLGKGDWR Sbjct: 99 EEHRRFLLGLQKLGKGDWR 117
|