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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958179
Clone id TST39A01NGRL0030_F05
Library
Length 595
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_F05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
TTGCAGGCTTGTAGCCTCTCTCACGTTGCCGCGCTTTGCCCTTCACCGGATCGTGCTGTA
TCTACATCGTCATGTGCTCGTGCTATCTTCTTGTGCGCACCCACCACCGTAGAGTCCCCA
TGCCCTGACGCTCTTCACAATGTAATCTGTGCAGCGAAGCCCTCTCCCCAATAGCAATCT
TTGAGGCTCGTGGTGAAATAAAGGGTTATCGAGGAAGGGTGCCGCAGTGACAAGGGAGCA
ACGAGCAGCAAAGTAGGGAATCAGAGGGAAATCTTTCAAAGCAGTATTGGGTGAAATTGG
CCTTTTTCATCATCATCATCATCATCAAATTGGCCTTTTTCATCATTCATTAAATTGAAG
CTGAATTGAACTCCCCACACTCTGATAGTGCACACAGAGTCAGAGACCATGGATAGTTGC
AGCAGAGAAGTGCTTGGTTTTTCTGCAGAAAGAGTGGAGAGGGGAAAAGAGAGGATTTTT
GCAAAAGAGTGGAGAGGGGAAAAAAGAGGATTTCCTCAGAAAGAGTGGAGAGGGGAAAAG
AGAGGATTTTTTCAAATGATGCCCTACAGAAATCCCAGCGGCGTTTACATCTACA
■■Homology search results ■■ -
sp_hit_id Q37373
Definition sp|Q37373|NDUS1_ACACA NADH-ubiquinone oxidoreductase 75 kDa subunit OS=Acanthamoeba castellanii
Align length 57
Score (bit) 30.8
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958179|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_F05, 5'
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q37373|NDUS1_ACACA NADH-ubiquinone oxidoreductase 75 kDa subu...    31   5.4  
sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1     30   9.2  
sp|A8MTN3|KRA2X_HUMAN Putative keratin-associated protein ENSP00...    30   9.2  
sp|Q9BYR9|KRA24_HUMAN Keratin-associated protein 2-4 OS=Homo sap...    30   9.2  
sp|P0C7H8|KRA23_HUMAN Keratin-associated protein 2-3 OS=Homo sap...    30   9.2  
sp|Q9BYT5|KRA22_HUMAN Keratin-associated protein 2-2 OS=Homo sap...    30   9.2  
sp|Q9BYU5|KRA21_HUMAN Keratin-associated protein 2-1 OS=Homo sap...    30   9.2  
sp|Q9DBS5|KLC4_MOUSE Kinesin light chain 4 OS=Mus musculus GN=Kl...    30   9.2  
sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KL...    30   9.2  

>sp|Q37373|NDUS1_ACACA NADH-ubiquinone oxidoreductase 75 kDa subunit
           OS=Acanthamoeba castellanii GN=NAD11 PE=3 SV=1
          Length = 675

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
 Frame = -2

Query: 594 VDVNAAGISVGHH-----LKKSSLFPSPLFLRKSSFFPSPLF----CKNPLFSPLHS 451
           VD +A  I  GHH     +  + +FPS  F+ K+SF+ + L      K  LFSP +S
Sbjct: 522 VDSSAFQIYQGHHGDTNAINSNLIFPSTSFIEKNSFYSNSLAIVQKTKKILFSPGNS 578


>sp|A2VEC9|SSPO_HUMAN SCO-spondin OS=Homo sapiens GN=SSPO PE=2 SV=1
          Length = 5147

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
 Frame = +1

Query: 37   CPSPDRAVSTSSCA---RAIFLCAPTTVESPCPDALHNVICAAKPSPQ*QSLR---LVVK 198
            C SP      + CA       LC P   E+ CP  +  V CA +   +   L+   +   
Sbjct: 4031 CSSPPSKNGGAPCAGERHQARLCNPMPCEAGCPAGMEVVTCANRCPRRCSDLQEGIVCQD 4090

Query: 199  *RVIEEGCRSDKGATSSKVG 258
             +V ++GCR  KG+     G
Sbjct: 4091 DQVCQKGCRCPKGSLEQDGG 4110


>sp|A8MTN3|KRA2X_HUMAN Putative keratin-associated protein
           ENSP00000381495 OS=Homo sapiens PE=3 SV=1
          Length = 129

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 37  CPSPDRAVSTSSCARAIFLCAPTTVESPC 123
           CPS   AV    C  A   C P +V+SPC
Sbjct: 80  CPSSCTAVVCRPCCWATTCCQPVSVQSPC 108


>sp|Q9BYR9|KRA24_HUMAN Keratin-associated protein 2-4 OS=Homo
           sapiens GN=KRTAP2-4 PE=2 SV=1
          Length = 128

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 37  CPSPDRAVSTSSCARAIFLCAPTTVESPC 123
           CPS   AV    C  A   C P +V+SPC
Sbjct: 80  CPSSCTAVVCRPCCWATTCCQPVSVQSPC 108


>sp|P0C7H8|KRA23_HUMAN Keratin-associated protein 2-3 OS=Homo
           sapiens GN=KRTAP2-3 PE=2 SV=1
          Length = 128

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 37  CPSPDRAVSTSSCARAIFLCAPTTVESPC 123
           CPS   AV    C  A   C P +V+SPC
Sbjct: 80  CPSSCTAVVCRPCCWATTCCQPVSVQSPC 108


>sp|Q9BYT5|KRA22_HUMAN Keratin-associated protein 2-2 OS=Homo
           sapiens GN=KRTAP2-2 PE=2 SV=2
          Length = 128

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 37  CPSPDRAVSTSSCARAIFLCAPTTVESPC 123
           CPS   AV    C  A   C P +V+SPC
Sbjct: 80  CPSSCTAVVCRPCCWATTCCQPVSVQSPC 108


>sp|Q9BYU5|KRA21_HUMAN Keratin-associated protein 2-1 OS=Homo
           sapiens GN=KRTAP2-1 PE=2 SV=2
          Length = 128

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 37  CPSPDRAVSTSSCARAIFLCAPTTVESPC 123
           CPS   AV    C  A   C P +V+SPC
Sbjct: 80  CPSSCTAVVCRPCCWATTCCQPVSVQSPC 108


>sp|Q9DBS5|KLC4_MOUSE Kinesin light chain 4 OS=Mus musculus GN=Klc4
           PE=1 SV=1
          Length = 619

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 452 EWRGEKRGFLQKSGE-GKKEDFLRKSGE 532
           EW G+  G LQ+SG  GK  D LR+S E
Sbjct: 540 EWSGDGSGTLQRSGSLGKIRDVLRRSSE 567


>sp|Q9NSK0|KLC4_HUMAN Kinesin light chain 4 OS=Homo sapiens GN=KLC4
           PE=1 SV=3
          Length = 619

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +2

Query: 452 EWRGEKRGFLQKSGE-GKKEDFLRKSGE 532
           EW G+  G LQ+SG  GK  D LR+S E
Sbjct: 540 EWSGDGSGTLQRSGSLGKIRDVLRRSSE 567
tr_hit_id Q54CF8
Definition tr|Q54CF8|Q54CF8_DICDI Chromo (CHRomatin Organization MOdifier) domain-containing protein OS=Dictyostelium discoideum
Align length 44
Score (bit) 40.8
E-value 0.059
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958179|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_F05, 5'
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q54CF8|Q54CF8_DICDI Chromo (CHRomatin Organization MOdifier) ...    41   0.059
tr|B1SAI8|B1SAI8_9BIFI Putative uncharacterized protein OS=Bifid...    36   1.9  
tr|Q2W3E8|Q2W3E8_MAGMM NAD/NADP transhydrogenase beta subunit OS...    34   5.6  
tr|Q24GQ6|Q24GQ6_TETTH Putative uncharacterized protein OS=Tetra...    34   7.3  
tr|A5JZX3|A5JZX3_PLAVI Putative uncharacterized protein OS=Plasm...    34   7.3  
tr|Q2GZG9|Q2GZG9_CHAGB Putative uncharacterized protein OS=Chaet...    33   9.4  
tr|A3WG85|A3WG85_9SPHN Iron-sulfur-binding protein, RdxA/RdxB/Fi...    33   9.5  
tr|Q6K9M1|Q6K9M1_ORYSJ Putative uncharacterized protein OJ1249_F...    33   9.5  

>tr|Q54CF8|Q54CF8_DICDI Chromo (CHRomatin Organization MOdifier)
            domain-containing protein OS=Dictyostelium discoideum
            GN=DDB_0220643 PE=4 SV=1
          Length = 3071

 Score = 40.8 bits (94), Expect = 0.059
 Identities = 15/44 (34%), Positives = 30/44 (68%)
 Frame = +3

Query: 450  KSGEGKREDFCKRVERGKKRISSERVERGKERIFSNDALQKSQR 581
            KS     +D C++VE+G+K ISS++V+  KE++ +N+ +   ++
Sbjct: 1889 KSSSNDEKDVCEKVEKGEKEISSDKVDENKEKVENNEKVNVDEK 1932


>tr|B1SAI8|B1SAI8_9BIFI Putative uncharacterized protein
           OS=Bifidobacterium dentium ATCC 27678 GN=BIFDEN_02089
           PE=4 SV=1
          Length = 259

 Score = 35.8 bits (81), Expect = 1.9
 Identities = 20/46 (43%), Positives = 27/46 (58%)
 Frame = -2

Query: 216 FLDNPLFHHEPQRLLLGRGLRCTDYIVKSVRAWGLYGGGCAQEDST 79
           FLD+P F  +P++L L  G+R  DY V  VRAW +      Q D+T
Sbjct: 166 FLDDPRF--DPEQLELVAGIRSDDYYVNMVRAWYVATALAKQWDAT 209


>tr|Q2W3E8|Q2W3E8_MAGMM NAD/NADP transhydrogenase beta subunit
           OS=Magnetospirillum magneticum (strain AMB-1 / ATCC
           700264) GN=amb2823 PE=4 SV=1
          Length = 469

 Score = 34.3 bits (77), Expect = 5.6
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
 Frame = -2

Query: 291 PNTALKDFPLIPYFAARCSLVTAAPF------LDNPLFHHEPQRLLLGRGLRCTDYIVKS 130
           PN+ +   P++  + A+ S+V           +DNPLF+ E  R+L G   +  D ++ +
Sbjct: 407 PNSPIAGMPVLEVWKAKTSIVMKRSMASGYAGVDNPLFYKENNRMLFGDAKKMLDEVLTA 466

Query: 129 VRA 121
           ++A
Sbjct: 467 LKA 469


>tr|Q24GQ6|Q24GQ6_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_00977540 PE=4
           SV=1
          Length = 352

 Score = 33.9 bits (76), Expect = 7.3
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -1

Query: 559 SFEKILSFPLSTLSEEILFFPLSTLLQKSSLFPSPLFLQKNQALLCCN 416
           SF  + ++ L T SE+ L +PL     K+ + P P+ LQ  +   CC+
Sbjct: 134 SFVNLKNYELLTTSEDCLKYPLLQPKHKAGMVPIPVQLQSRKIRTCCD 181


>tr|A5JZX3|A5JZX3_PLAVI Putative uncharacterized protein
           OS=Plasmodium vivax GN=PVX_123500 PE=4 SV=1
          Length = 754

 Score = 33.9 bits (76), Expect = 7.3
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 446 QKEWRGEKRGFLQKSGEGKKEDFLRKSGEGKRED 547
           +K    EK G ++KSGEG++   + KSGEG++ D
Sbjct: 366 EKAGEDEKAGEVEKSGEGEEAGEVEKSGEGEKTD 399


>tr|Q2GZG9|Q2GZG9_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_05077 PE=4 SV=1
          Length = 292

 Score = 33.5 bits (75), Expect = 9.4
 Identities = 18/49 (36%), Positives = 30/49 (61%)
 Frame = +3

Query: 396 RVRDHG*LQQRSAWFFCRKSGEGKREDFCKRVERGKKRISSERVERGKE 542
           ++R+HG +   +   F + SGE  RE+  KRVE+G ++  S R  RG++
Sbjct: 245 QLREHG-IDNYAVTEFVQGSGERARENGGKRVEQGLEKKKSSRTRRGRK 292


>tr|A3WG85|A3WG85_9SPHN Iron-sulfur-binding protein, RdxA/RdxB/FixG
           family protein OS=Erythrobacter sp. NAP1 GN=NAP1_15823
           PE=4 SV=1
          Length = 515

 Score = 33.5 bits (75), Expect = 9.5
 Identities = 14/22 (63%), Positives = 17/22 (77%)
 Frame = +2

Query: 425 EKCLVFLQKEWRGEKRGFLQKS 490
           EK L+   K+WRGEKRG L+KS
Sbjct: 266 EKSLIVTYKDWRGEKRGSLKKS 287


>tr|Q6K9M1|Q6K9M1_ORYSJ Putative uncharacterized protein
           OJ1249_F12.6 OS=Oryza sativa subsp. japonica
           GN=OJ1249_F12.6 PE=4 SV=1
          Length = 158

 Score = 33.5 bits (75), Expect = 9.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 463 GKERIFAKEWRGEKRGFPQKEWRGEKRG 546
           G+ R  A  W GEKR    ++WRG KRG
Sbjct: 24  GRRRKPADWWEGEKRRHAPRQWRGRKRG 51