DK958175 |
Clone id |
TST39A01NGRL0030_F01 |
Library |
TST39 |
Length |
612 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_F01. 5' end sequence. |
Accession |
DK958175 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CGCTTCTCACCAGCCCGCAGTAGCTCGACCATGGCAGATTATTGGCGCTTCCAAGACGGA GGGCAACCTGTTTCGGCTCATGTGAAGAGGCCGCGAGCAGATTACGACGACGTACCACTT ACTGGATCCATCTACTTACCCAGAGAAGAGCCTCGATTTGATACTCGAGATGGTCGTTAT CCATGGATGGAATCCAGTTCTCTTGGGATGGGTCTTGATGGAACTAGAAATACGATGGCT TACGCTCCAGGTAGCATTACCAGCTCAGATATGTCAGGGGCAGCTGGAGCTCCATACATG GGTTTGAATGGAGCAGGGCAGTTTGGGGATTCAAAGTTGGGTATTGCATCTTTGAATGAT CCATCTTTGGCACCTCAAGGTGGTCGTATGATGGGAGGAATGGATCTTGGGGTACAACAT GGTTTGAATGGGGCCCCCAAGCAAGATGCACAACTACGTGGGCTAGCAGTCCCAGGGATG GAAGCTACCCACACTTTGTATGTTGAAGGTCTTCCTGCAGATTGTTCCCGCAGAGAGGCA GCTCACATATTCCGGCCGTTTCTTGGGTTTCAAGAGGTTCGTCTGGTTCGCAAGGAGGGA AAGAGGGATGGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q92266 |
Definition |
sp|Q92266|PEX13_PICPA Peroxisomal membrane protein PEX13 OS=Pichia pastoris |
Align length |
101 |
Score (bit) |
41.2 |
E-value |
0.004 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NNP8 |
Definition |
tr|A9NNP8|A9NNP8_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
216 |
Score (bit) |
102.0 |
E-value |
2.0e-20 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958175|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_F01, 5' (612 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NNP8|A9NNP8_PICSI Putative uncharacterized protein OS=Picea... 102 2e-20 tr|A9NN64|A9NN64_PICSI Putative uncharacterized protein OS=Picea... 100 7e-20 tr|Q8H0P8|Q8H0P8_MEDTR RNA-binding protein OS=Medicago truncatul... 97 1e-18 tr|A9SF35|A9SF35_PHYPA Predicted protein (Fragment) OS=Physcomit... 88 3e-16 tr|A7QEZ7|A7QEZ7_VITVI Chromosome chr16 scaffold_86, whole genom... 86 1e-15 tr|Q6Z9C4|Q6Z9C4_ORYSJ Os08g0547000 protein OS=Oryza sativa subs... 86 2e-15 tr|B8B9D0|B8B9D0_ORYSI Putative uncharacterized protein OS=Oryza... 86 2e-15 tr|A1A6K6|A1A6K6_ARATH At1g76940 OS=Arabidopsis thaliana PE=2 SV=1 86 2e-15 tr|Q53HY5|Q53HY5_TOBAC Putative uncharacterized protein c406 OS=... 77 8e-13 tr|B8B2P5|B8B2P5_ORYSI Putative uncharacterized protein OS=Oryza... 73 1e-11 tr|Q8GYL1|Q8GYL1_ARATH Putative uncharacterized protein At1g7694... 70 7e-11 tr|Q6JB11|Q6JB11_MAIZE MEG5 OS=Zea mays GN=meg5 PE=2 SV=1 70 1e-10 tr|Q0J072|Q0J072_ORYSJ Os09g0527100 protein OS=Oryza sativa subs... 70 1e-10 tr|B7EM90|B7EM90_ORYSJ cDNA clone:J033046E14, full insert sequen... 70 1e-10 tr|B8BDW7|B8BDW7_ORYSI Putative uncharacterized protein OS=Oryza... 67 6e-10 tr|A3C0U1|A3C0U1_ORYSJ Putative uncharacterized protein OS=Oryza... 67 6e-10 tr|B7E9N3|B7E9N3_ORYSJ cDNA clone:002-108-A10, full insert seque... 67 1e-09 tr|A7QMY7|A7QMY7_VITVI Chromosome undetermined scaffold_129, who... 66 1e-09 tr|B6SZV0|B6SZV0_MAIZE Nucleic acid binding protein OS=Zea mays ... 65 3e-09 tr|B4FCH4|B4FCH4_MAIZE Putative uncharacterized protein OS=Zea m... 65 3e-09 tr|A7P4N7|A7P4N7_VITVI Chromosome chr4 scaffold_6, whole genome ... 65 3e-09 tr|Q652A3|Q652A3_ORYSJ Os09g0527500 protein OS=Oryza sativa subs... 65 4e-09 tr|B8BDW8|B8BDW8_ORYSI Putative uncharacterized protein OS=Oryza... 65 4e-09 tr|A3C0U2|A3C0U2_ORYSJ Putative uncharacterized protein OS=Oryza... 65 4e-09 tr|A0C1D1|A0C1D1_PARTE Chromosome undetermined scaffold_141, who... 61 5e-08 tr|A0CCE1|A0CCE1_PARTE Chromosome undetermined scaffold_167, who... 60 1e-07 tr|Q23K80|Q23K80_TETTH Putative uncharacterized protein (Fragmen... 58 4e-07 tr|Q8H642|Q8H642_ORYSJ Os06g0127500 protein OS=Oryza sativa subs... 57 1e-06 tr|A5B7S3|A5B7S3_VITVI Putative uncharacterized protein OS=Vitis... 55 4e-06 tr|A2Y8S8|A2Y8S8_ORYSI Putative uncharacterized protein OS=Oryza... 49 2e-04
>tr|A9NNP8|A9NNP8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 274
Score = 102 bits (254), Expect = 2e-20 Identities = 85/216 (39%), Positives = 111/216 (51%), Gaps = 22/216 (10%) Frame = +1
Query: 31 MAD-YWRFQDG---GQPVSAHVKRPRADYDDVPLTGSIYLPREEPRFDTRDGRYPWMESS 198 MAD YWR DG G P A KR R D ++G +P P GR ES+ Sbjct: 1 MADAYWR--DGRSLGIPTPA--KRARGDLPPAGISGGRDIPGYLPDMA---GRSFMRESN 53
Query: 199 SLGMGLDGTRNTMAYAPGSITSSDMSGAAGAPYMGLNGAGQFGDSKLGIASLNDPSLA-- 372 G RN + Y+ G ++S+D+ G G+ L G+G +G L +SL D L Sbjct: 54 PPGSLDSHARNGLPYSAGGLSSADIGGLGGSLGTRLGGSGGYGG--LSGSSLADSVLMGQ 111
Query: 373 --------PQGGRMMGGMDLGVQHGLNGAPKQDAQLRGLAVP--------GMEATHTLYV 504 P G +G + LG Q + DAQ GL P +A++TL+V Sbjct: 112 RPGIGNADPGYGGKLGSLGLGYQ-------RSDAQ--GLRDPLRRPDEHLPPDASNTLFV 162
Query: 505 EGLPADCSRREAAHIFRPFLGFQEVRLVRKEGKRDG 612 EGLPADC+RREAAHIFRPF+GF+EVRLV+KE +R G Sbjct: 163 EGLPADCTRREAAHIFRPFIGFKEVRLVQKEPRRPG 198
>tr|A9NN64|A9NN64_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 265
Score = 100 bits (249), Expect = 7e-20 Identities = 83/206 (40%), Positives = 109/206 (52%), Gaps = 15/206 (7%) Frame = +1
Query: 40 YW-RF---QDG-GQPVSAHVKRPRADYDDVPL---TGSIYLPREEPRFDTRDGRYPWMES 195 YW RF +DG +++ KRPR +YD + G YLPRE+PR D R R E+ Sbjct: 5 YWNRFAAERDGRSAALASAAKRPRNEYDLLTSGSRDGPGYLPREDPRLDERSRRL-LRET 63
Query: 196 SSLGMGLDGTRNTMAYAPGSITSSDMSGAAGAPYMGLN-GAGQFGDSKLGIASLNDPSLA 372 LG + YA + S SG GL G G+ S LG ++L+D L Sbjct: 64 DPLGPAYE------RYARNGLPSYGSSGLNAGDLGGLGMGLGRSAGSGLGGSALDDQVLM 117
Query: 373 PQGGRMMGGMDLGVQHGLNGAPKQDAQLRG-LAVPGME-----ATHTLYVEGLPADCSRR 534 GR + MD G+ G +D+QLR L P + A++TL+VEGLP C+RR Sbjct: 118 ---GRRLS-MDAGLGGKGQGLGFKDSQLRDPLRRPDNDHLPPDASNTLFVEGLPPKCTRR 173
Query: 535 EAAHIFRPFLGFQEVRLVRKEGKRDG 612 EAAHIFRPF+GF+EVRLV KE + G Sbjct: 174 EAAHIFRPFVGFKEVRLVNKEARNPG 199
>tr|Q8H0P8|Q8H0P8_MEDTR RNA-binding protein OS=Medicago truncatula GN=rbp1 PE=2 SV=1 Length = 261
Score = 96.7 bits (239), Expect = 1e-18 Identities = 82/209 (39%), Positives = 103/209 (49%), Gaps = 15/209 (7%) Frame = +1
Query: 31 MAD-YWRFQDGGQPVSAHVKRPRADYDDVPLTG------SIYLPREEPRFDTRDGRYPWM 189 MAD YW Q P S KRPR DY+ +P +G YL REE R G Sbjct: 1 MADGYWNRQQSLLPHSGLHKRPRPDYE-MPASGLPSGNEMHYLSREEDR----SGHPMVK 55
Query: 190 ESSSLGMGLDGTRNTMAYAPGSITSSDMSGAAGAPYMGLNGAGQFGDSKLGIASLNDPSL 369 +S ++G D Y G + S A+ +GL Q G L SL+DPS Sbjct: 56 DSKTIGSAYD------RYLQGQVPSFTSGEASTVGALGL----QRGIGGLPNHSLSDPS- 104
Query: 370 APQGGRMMGGMDL-----GVQHGLNGAPKQDAQLRGLAVPGM---EATHTLYVEGLPADC 525 A G GG DL G+ +G P D R P + +A+ TLY+EGLP+DC Sbjct: 105 AMIGRHGGGGPDLAPNGRGMNYGFQ--PPMDPVSRHGPEPALLPPDASPTLYIEGLPSDC 162
Query: 526 SRREAAHIFRPFLGFQEVRLVRKEGKRDG 612 +RRE AHIFRPF+G++EVRLV KE K G Sbjct: 163 TRREVAHIFRPFVGYREVRLVSKEAKHRG 191
>tr|A9SF35|A9SF35_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_18967 PE=4 SV=1 Length = 158
Score = 88.2 bits (217), Expect = 3e-16 Identities = 54/107 (50%), Positives = 67/107 (62%), Gaps = 6/107 (5%) Frame = +1
Query: 304 LNGAGQFGDSKLGIASLNDPSLAPQGGRMMGGMDLGVQH-----GLNG-APKQDAQLRGL 465 L G G G LG+ + D S G MG +D+G+ GLNG AP+ D GL Sbjct: 4 LGGGGGLGP--LGLGGIPDESQLM--GARMGPLDVGMGGRPGALGLNGGAPEPDVLRGGL 59
Query: 466 AVPGMEATHTLYVEGLPADCSRREAAHIFRPFLGFQEVRLVRKEGKR 606 V +A+ TL+V+GLP DCSRREAAHIFRPF+GF+EVRLV K+ KR Sbjct: 60 EVLPPDASSTLFVDGLPQDCSRREAAHIFRPFIGFKEVRLVHKDAKR 106
>tr|A7QEZ7|A7QEZ7_VITVI Chromosome chr16 scaffold_86, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037217001 PE=4 SV=1 Length = 230
Score = 86.3 bits (212), Expect = 1e-15 Identities = 72/201 (35%), Positives = 96/201 (47%), Gaps = 7/201 (3%) Frame = +1
Query: 31 MAD-YWRFQDGGQPV---SAHVKRPRADYDDVPLTGSIYLPREEPRFDTRDGRYPWMESS 198 MAD YWR+ + QP S KRPR+DYD + G LP R D R +S Sbjct: 1 MADPYWRYGEVRQPPPIPSLSAKRPRSDYD---VPGGHDLPSYFSREDERAAHRSIRDSD 57
Query: 199 SLGMGLDG-TRNTMAYAPGSITSSDMSGAAGAPYMGLNGAGQFGDSKLGIAS--LNDPSL 369 S+G D RN + G G +G P G GI S ++DP + Sbjct: 58 SIGASYDRYLRNAQMPSYG--------GDSGRPLSG------------GITSHPVDDPRV 97
Query: 370 APQGGRMMGGMDLGVQHGLNGAPKQDAQLRGLAVPGMEATHTLYVEGLPADCSRREAAHI 549 G G G +G + L +P +A+ TL+VEGLPA+C+RRE +HI Sbjct: 98 VGVRGVDQGATVKSQSLGFSGGRPE------LPLPP-DASSTLFVEGLPANCTRREVSHI 150
Query: 550 FRPFLGFQEVRLVRKEGKRDG 612 FRPF+G++EVRLV KE + G Sbjct: 151 FRPFVGYKEVRLVSKESRHSG 171
>tr|Q6Z9C4|Q6Z9C4_ORYSJ Os08g0547000 protein OS=Oryza sativa subsp. japonica GN=P0544G09.7 PE=2 SV=1 Length = 294
Score = 85.5 bits (210), Expect = 2e-15 Identities = 68/184 (36%), Positives = 90/184 (48%), Gaps = 7/184 (3%) Frame = +1
Query: 82 VKRPRADYDDVP----LTGSIYLPREEPRFDTRDGRYPWMESSSLGMGLDG-TRNTMAYA 246 +KR R DY DVP +TG Y PRE R G + E+ ++G D RN M Sbjct: 61 LKRARPDYGDVPAGQDMTG--YYPRETDR----TGYHALRENEAIGASYDRYLRNGMPSV 114
Query: 247 PGSITSSDMSGAAGAPYMGLNGAGQFGDSKLGIASLNDPSLAPQGGRMMG-GMDL-GVQH 420 + T+ + G G G+ G G + RM+G GMD G+ + Sbjct: 115 AATETNRPVVGGMG----GMGGMGGY---------------PVDDRRMIGVGMDSRGMGY 155
Query: 421 GLNGAPKQDAQLRGLAVPGMEATHTLYVEGLPADCSRREAAHIFRPFLGFQEVRLVRKEG 600 G P A +A+ TLYVEGLPA+C+RRE +HIFRPF+GF+EVRLV KE Sbjct: 156 GARPEPPLPA----------DASSTLYVEGLPANCTRREVSHIFRPFVGFREVRLVNKES 205
Query: 601 KRDG 612 + G Sbjct: 206 RHPG 209
>tr|B8B9D0|B8B9D0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30140 PE=4 SV=1 Length = 218
Score = 85.5 bits (210), Expect = 2e-15 Identities = 68/184 (36%), Positives = 90/184 (48%), Gaps = 7/184 (3%) Frame = +1
Query: 82 VKRPRADYDDVP----LTGSIYLPREEPRFDTRDGRYPWMESSSLGMGLDG-TRNTMAYA 246 +KR R DY DVP +TG Y PRE R G + E+ ++G D RN M Sbjct: 11 LKRARPDYGDVPAGQDMTG--YYPRETDR----TGYHALRENEAIGASYDRYLRNGMPSV 64
Query: 247 PGSITSSDMSGAAGAPYMGLNGAGQFGDSKLGIASLNDPSLAPQGGRMMG-GMDL-GVQH 420 + T+ + G G G+ G G + RM+G GMD G+ + Sbjct: 65 AATETNRPVVGGMG----GMGGMGGY---------------PVDDRRMIGVGMDSRGMGY 105
Query: 421 GLNGAPKQDAQLRGLAVPGMEATHTLYVEGLPADCSRREAAHIFRPFLGFQEVRLVRKEG 600 G P A +A+ TLYVEGLPA+C+RRE +HIFRPF+GF+EVRLV KE Sbjct: 106 GARPEPPLPA----------DASSTLYVEGLPANCTRREVSHIFRPFVGFREVRLVNKES 155
Query: 601 KRDG 612 + G Sbjct: 156 RHPG 159
>tr|A1A6K6|A1A6K6_ARATH At1g76940 OS=Arabidopsis thaliana PE=2 SV=1 Length = 233
Score = 85.5 bits (210), Expect = 2e-15 Identities = 73/203 (35%), Positives = 95/203 (46%), Gaps = 12/203 (5%) Frame = +1
Query: 31 MAD-YWRFQ-DGGQPVSAHVKRPRADYDDVPLTGSI-----YLPREEPRFDTRDGRYPWM 189 MAD YW Q P +KRPR+D++ T +I Y PR+E D D R Sbjct: 1 MADGYWNQQRQQHHPPGGPMKRPRSDFEAPSSTMTIGHGGGYYPRDED-LDVPDTR---- 55
Query: 190 ESSSLGMGLDGTRNTMAYAPGSITSSDMSGAAGAPYMGLNGAGQFGDSKLGIASLNDPSL 369 T+ A S SG G+ MG +G G G G D + Sbjct: 56 --------------TIGSAYDRYLQSVQSGEGGSVSMGRSGGGGGGGG--GNVQTIDDFM 99
Query: 370 APQGGRMMGGMDLGVQHGLNGA-----PKQDAQLRGLAVPGMEATHTLYVEGLPADCSRR 534 +GG L + HG NG P + R L +A++TLYVEGLP++CSRR Sbjct: 100 LRRGGV------LPLDHGPNGHTIGFDPPEPVGRRNLP---SDASNTLYVEGLPSNCSRR 150
Query: 535 EAAHIFRPFLGFQEVRLVRKEGK 603 E AHIFRPF+G++EVRLV K+ K Sbjct: 151 EVAHIFRPFVGYREVRLVTKDSK 173
>tr|Q53HY5|Q53HY5_TOBAC Putative uncharacterized protein c406 OS=Nicotiana tabacum GN=c406 PE=2 SV=1 Length = 183
Score = 77.0 bits (188), Expect = 8e-13 Identities = 70/197 (35%), Positives = 102/197 (51%), Gaps = 14/197 (7%) Frame = +1
Query: 40 YW-RFQDGGQPVSAHV-KRPRADY-DDVPLTGSI-------YLPREEPRFDTRDGRYPWM 189 YW + ++ P SA + KRPR++Y D+P +G YL R++ R R + Sbjct: 5 YWNQHREAPLPQSAGLLKRPRSEYVPDLPPSGMSSAHEMHHYLGRDDDRGGPRV-----V 59
Query: 190 ESSSLGMGLDGTRNTMAYAPGSITSSDMSGAAGAPYMGLNGAGQFGDSKLGIA----SLN 357 ++ S+G D R + S++ + + G +GL AG G S L + S Sbjct: 60 DTQSIGSAYD--RYLQSSQLSSLSVGEANNYKG---VGLARAGAGGISSLPVRDPLPSAR 114
Query: 358 DPSLAPQGGRMMGGMDLGVQHGLNGAPKQDAQLRGLAVPGMEATHTLYVEGLPADCSRRE 537 P LAP G M+ L Q + P+ L +P +A++TLY+EGLPAD SRRE Sbjct: 115 GPELAPNGRAMV----LRGQMPVESLPRPRETL---PLPP-DASNTLYIEGLPADSSRRE 166
Query: 538 AAHIFRPFLGFQEVRLV 588 AHIFRPF+G++EVRLV Sbjct: 167 VAHIFRPFVGYKEVRLV 183
>tr|B8B2P5|B8B2P5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_21654 PE=4 SV=1 Length = 232
Score = 73.2 bits (178), Expect = 1e-11 Identities = 51/152 (33%), Positives = 78/152 (51%), Gaps = 3/152 (1%) Frame = +1
Query: 151 PRFDTRDGRYPWMESSSLGMGLDGTRNTMAYAPGSITSSDMSGAAGAPYMGLNGAGQF-- 324 PR +G Y ++L D R+ + P + + GAAGA + L G G Sbjct: 23 PRHPPSEGSYYASRMAALHGTSDILRHDVPLQPRAY---GLDGAAGASHPALAGLGGLAA 79
Query: 325 GDSKLGIASLNDPSLAPQGGRMMGGMDL-GVQHGLNGAPKQDAQLRGLAVPGMEATHTLY 501 G + G + L DP+L + + + V+H P+ L G P + ++ L+ Sbjct: 80 GTTARGPSPLEDPALVRRSSSLGKTASIPDVEH-----PRPLLNLDG---PREDESNILF 131
Query: 502 VEGLPADCSRREAAHIFRPFLGFQEVRLVRKE 597 V+GLP DC+RRE AH+FRPF+GF+++RLV KE Sbjct: 132 VDGLPTDCTRREVAHLFRPFVGFKDIRLVHKE 163
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