DK958094 |
Clone id |
TST39A01NGRL0030_B15 |
Library |
TST39 |
Length |
650 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_B15. 5' end sequence. |
Accession |
DK958094 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
CAAAGCGAGAGACGAAGTTTCTCCTGTACATTTTGGAACAAGCTATGAGGAATGAGTCTC TTTGCGATGAGGCTTCTTTAACAGTGGCAGAACAAAGGAGGAGATGAACTCGCTAGTTCT TGATCTGGGTCATCTCCCCAGTACTGGCCTTGTGCAGGGCCGCAAGCAGACCAAGGTCTC GGCTAAAGACAGGGAGCGCTCTTGCCTTCGCTTGCAGCGGTTGATTATCGGTCGCCGCAT TGGAACCTTTCTTGCCTTCTTCATCTCTGCTATCTCCCTGCTAATGCTCTTCAACATTAC CAGCAGGGTCACTGCTCCAAAGTCAGCCTCAGACTATGACACTCCACCAGACATGATTTT TAACAATCAACATCAGAACTTAAGCATGAAGGATATTCAATTTTCTGTGTCTAGTAGCCT GCACCCAGAACATGAGACAATGGGGGTGCGTCCTACCTCCTTATCAAGTATTCCTCCACC GAGGGAGAGTTTGCCAAAGTTTCAAAAGGCAGGCACTCCCATGCAAAGGATAGACAGCTA TCAGCATGGGCCTTGGCCTTGGTTTAGTTCAGATCATCCCTTACCTCTGGGTCATCCTTG TCAAGGTTTCGCTCTGCCTTCTCCCCCAGCTGACAAAAAGCGAACTGGTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9JKS6 |
Definition |
sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus |
Align length |
89 |
Score (bit) |
36.6 |
E-value |
0.12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958094|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_B15, 5' (650 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo ... 37 0.12 sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=... 35 0.26 sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=... 35 0.26 sp|Q9VCA8|ANKHM_DROME Ankyrin repeat and KH domain-containing pr... 35 0.34 sp|Q9PU36|PCLO_CHICK Protein piccolo (Fragment) OS=Gallus gallus... 33 1.3 sp|Q8PL03|LFTR_XANAC Leucyl/phenylalanyl-tRNA--protein transfera... 32 2.9 sp|P10070|GLI2_HUMAN Zinc finger protein GLI2 OS=Homo sapiens GN... 32 2.9 sp|Q6NSM8|QSK_DANRE Serine/threonine-protein kinase QSK homolog ... 32 3.8 sp|O43516|WIPF1_HUMAN WAS/WASL-interacting protein family member... 31 6.4 sp|O60522|TDRD6_HUMAN Tudor domain-containing protein 6 OS=Homo ... 31 6.4 sp|Q4P149|XRN2_USTMA 5'-3' exoribonuclease 2 OS=Ustilago maydis ... 30 8.4 sp|Q13470|TNK1_HUMAN Non-receptor tyrosine-protein kinase TNK1 O... 30 8.4 sp|Q06219|NR4A2_MOUSE Nuclear receptor subfamily 4 group A membe... 30 8.4 sp|Q3SH93|LFTR_THIDA Leucyl/phenylalanyl-tRNA--protein transfera... 30 8.4 sp|Q9HA82|LASS4_HUMAN LAG1 longevity assurance homolog 4 OS=Homo... 30 8.4
>sp|Q9JKS6|PCLO_RAT Protein piccolo OS=Rattus norvegicus GN=Pclo PE=1 SV=1 Length = 5085
Score = 36.6 bits (83), Expect = 0.12 Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 9/89 (10%) Frame = +2
Query: 314 APKSASDYDTPPDMIFNNQHQNLSMKDIQFSV--------SSSLHPEHETMGVRPTSLSS 469 A K +S+ +++ ++ L M+ + S SSSLH T G PTS+SS Sbjct: 1624 ADKYSSESSQKKTILYFDEEPELEMESLTDSPEDRSRGEGSSSLHASSFTPGTSPTSVSS 1683
Query: 470 IPPPRESLPKFQKAGTPMQRIDSYQ-HGP 553 + +S P +K + QR ++ HGP Sbjct: 1684 LDEDSDSSPSHKKGESKQQRKARHRSHGP 1712
>sp|Q9QYX7|PCLO_MOUSE Protein piccolo OS=Mus musculus GN=Pclo PE=1 SV=3 Length = 5038
Score = 35.4 bits (80), Expect = 0.26 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +2
Query: 410 SSSLHPEHETMGVRPTSLSSIPPPRESLPKFQKAGTPMQRIDSYQ-HGP 553 SSSLH T G PTS+SS+ +S P +K + QR ++ HGP Sbjct: 1622 SSSLHASSFTPGTSPTSVSSLDEDSDSSPSHKKGESKQQRKARHRSHGP 1670
>sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=3 Length = 5183
Score = 35.4 bits (80), Expect = 0.26 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Frame = +2
Query: 410 SSSLHPEHETMGVRPTSLSSIPPPRESLPKFQKAGTPMQRIDSYQ-HGP 553 SSSLH T G PTS+SS+ +S P +K + QR ++ HGP Sbjct: 1648 SSSLHASSFTPGTSPTSVSSLDEDSDSSPSHKKGESKQQRKARHRPHGP 1696
>sp|Q9VCA8|ANKHM_DROME Ankyrin repeat and KH domain-containing protein mask OS=Drosophila melanogaster GN=mask PE=1 SV=2 Length = 4001
Score = 35.0 bits (79), Expect = 0.34 Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 6/96 (6%) Frame = +2
Query: 359 FNNQHQNLSMKDIQFSVSSSLHPEHETMGVRPTSLSSIPPPRESLPKFQ------KAGTP 520 FN +L+M+D +++S L P + +P L PPP +S + Q K Sbjct: 3851 FNVGGPSLNMED---ALASVLPPWAHELKAQPPGLQQPPPPPQSQQQQQQPLNWLKQQPQ 3907
Query: 521 MQRIDSYQHGPWPWFSSDHPLPLGHPCQGFALPSPP 628 Q+ +Y +GP+P H P+ P + +PP Sbjct: 3908 QQQYRAYNNGPYPQQQQQHE-PMNMPMDYHNMQAPP 3942
>sp|Q9PU36|PCLO_CHICK Protein piccolo (Fragment) OS=Gallus gallus GN=PCLO PE=2 SV=1 Length = 5120
Score = 33.1 bits (74), Expect = 1.3 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 3/51 (5%) Frame = +2
Query: 410 SSSLHPEHETMGVRPTSLSSIPPPRESLPKFQKAG--TPMQRIDSYQ-HGP 553 SSSLH T G PTS+SS+ +S P +K G + QR ++ HGP Sbjct: 1633 SSSLHASSFTPGTSPTSVSSLDEDSDSSPSHKKLGGESKQQRKARHRSHGP 1683
>sp|Q8PL03|LFTR_XANAC Leucyl/phenylalanyl-tRNA--protein transferase OS=Xanthomonas axonopodis pv. citri GN=aat PE=3 SV=1 Length = 249
Score = 32.0 bits (71), Expect = 2.9 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +2
Query: 518 PMQRIDSYQHGPWPWFSSDHPL 583 P + +++Y HG +PWFS D P+ Sbjct: 39 PQRLLNAYAHGIFPWFSQDQPI 60
>sp|P10070|GLI2_HUMAN Zinc finger protein GLI2 OS=Homo sapiens GN=GLI2 PE=1 SV=4 Length = 1586
Score = 32.0 bits (71), Expect = 2.9 Identities = 28/121 (23%), Positives = 47/121 (38%), Gaps = 10/121 (8%) Frame = +2
Query: 317 PKSASDYDTPPDMIFNNQHQNLSMKDIQFSVSSSLHPEHETMGVRPTSLSSIPPPR--ES 490 P+S S+ P + + Q ++ +++ H +GV ++L+ +PPP +S Sbjct: 1267 PQSCSNMPAKPGHLGHPQQTEVAPDP------TTMGNRHRELGVPDSALAGVPPPHPVQS 1320
Query: 491 LPKFQKAGTPMQRIDSYQHGP------WPWFSSDHPLPLGHPCQGFAL--PSPPADKKRT 646 P+ + Y P P F P+G GF L P PP + T Sbjct: 1321 YPQQSHHLAASMSQEGYHQVPSLLPARQPGFMEPQTGPMGVATAGFGLVQPRPPLEPSPT 1380
Query: 647 G 649 G Sbjct: 1381 G 1381
>sp|Q6NSM8|QSK_DANRE Serine/threonine-protein kinase QSK homolog OS=Danio rerio GN=zgc:66101 PE=2 SV=1 Length = 1187
Score = 31.6 bits (70), Expect = 3.8 Identities = 31/87 (35%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Frame = +2
Query: 395 IQFSVSSSLHPEHETMGVRPTSLSSIPPPRESLPKFQKAGTPMQRIDSYQHGPWPWFS-S 571 IQ S HP + RP + SS PPP Q G P YQHG + S S Sbjct: 697 IQPSSPPPTHPSNHLF--RPANQSSPPPPGGGAGLMQTHGGP--SAVQYQHGSALYQSPS 752
Query: 572 DHPLPLGHPCQGFA--LPSPPADKKRT 646 D P P P A PS P RT Sbjct: 753 DSPPPTSLPRMALANQQPSVPPGSART 779
>sp|O43516|WIPF1_HUMAN WAS/WASL-interacting protein family member 1 OS=Homo sapiens GN=WIPF1 PE=1 SV=2 Length = 503
Score = 30.8 bits (68), Expect = 6.4 Identities = 30/125 (24%), Positives = 40/125 (32%), Gaps = 23/125 (18%) Frame = +2
Query: 344 PPDMIFNNQHQNLSMKDIQFSVSSSLHPEHETMGVRPTSLSSIPPPRESLPKFQKAGTP- 520 PP N++ L +++ S S+ P G P S PPP P + P Sbjct: 322 PPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPP 381
Query: 521 ----------------------MQRIDSYQHGPWPWFSSDHPLPLGHPCQGFALPSPPAD 634 +DS + GP P PLP P G P PP+ Sbjct: 382 PPPVSRNGSTSRALPATPQLPSRSGVDSPRSGPRP------PLPPDRPSAGAPPPPPPST 435
Query: 635 KKRTG 649 R G Sbjct: 436 SIRNG 440
>sp|O60522|TDRD6_HUMAN Tudor domain-containing protein 6 OS=Homo sapiens GN=TDRD6 PE=2 SV=2 Length = 2096
Score = 30.8 bits (68), Expect = 6.4 Identities = 19/67 (28%), Positives = 34/67 (50%) Frame = -3
Query: 471 ILDKEVGRTPIVSCSGCRLLDTEN*ISFMLKF*C*LLKIMSGGVS*SEADFGAVTLLVML 292 +L + GR +VSCS R L E ++ + C L + GG S + G + L++ Sbjct: 343 VLHVDYGRKELVSCSSLRYLLPEYFRMPVVTYPCALYGLWDGGRGWSRSQVGDLKTLILG 402
Query: 291 KSISREI 271 K+++ +I Sbjct: 403 KAVNAKI 409
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7R5S5 |
Definition |
tr|A7R5S5|A7R5S5_VITVI Chromosome undetermined scaffold_1043, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
68 |
Score (bit) |
47.8 |
E-value |
0.0006 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958094|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_B15, 5' (650 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7R5S5|A7R5S5_VITVI Chromosome undetermined scaffold_1043, wh... 48 6e-04 tr|A7R4V6|A7R4V6_VITVI Chromosome undetermined scaffold_791, who... 47 0.001 tr|A7R4P9|A7R4P9_VITVI Chromosome undetermined scaffold_754, who... 47 0.001 tr|A5BFE3|A5BFE3_VITVI Putative uncharacterized protein OS=Vitis... 47 0.001 tr|Q9FZ97|Q9FZ97_ARATH F3H9.11 protein OS=Arabidopsis thaliana G... 45 0.005 tr|Q8W4K7|Q8W4K7_ARATH Putative uncharacterized protein At1g2824... 45 0.005 tr|B4FNS1|B4FNS1_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.055 tr|Q4CZJ9|Q4CZJ9_TRYCR Putative uncharacterized protein OS=Trypa... 38 0.47 tr|Q5B396|Q5B396_EMENI Putative uncharacterized protein OS=Emeri... 38 0.61 tr|B6UCQ3|B6UCQ3_MAIZE Putative uncharacterized protein OS=Zea m... 37 1.0 tr|A9TR40|A9TR40_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.0 tr|B0CR40|B0CR40_LACBS Predicted protein OS=Laccaria bicolor (st... 37 1.0 tr|Q4DTC2|Q4DTC2_TRYCR Putative uncharacterized protein OS=Trypa... 37 1.4 tr|Q4DZY0|Q4DZY0_TRYCR Putative uncharacterized protein OS=Trypa... 36 1.8 tr|A9RN87|A9RN87_PHYPA Predicted protein OS=Physcomitrella paten... 36 2.3 tr|Q4DVW5|Q4DVW5_TRYCR Putative uncharacterized protein OS=Trypa... 36 2.3 tr|Q4DNP3|Q4DNP3_TRYCR Putative uncharacterized protein OS=Trypa... 36 2.3 tr|Q4D846|Q4D846_TRYCR Putative uncharacterized protein OS=Trypa... 36 2.3 tr|Q29HK6|Q29HK6_DROPS GA16976 (Fragment) OS=Drosophila pseudoob... 36 2.3 tr|B4GXJ0|B4GXJ0_DROPE GL20288 (Fragment) OS=Drosophila persimil... 36 2.3 tr|B3P769|B3P769_DROER GG11270 OS=Drosophila erecta GN=GG11270 P... 36 2.3 tr|Q1DM08|Q1DM08_COCIM Chitin synthase OS=Coccidioides immitis G... 36 2.3 tr|Q6K4D7|Q6K4D7_ORYSJ Os09g0363900 protein OS=Oryza sativa subs... 35 3.0 tr|A2Z0E3|A2Z0E3_ORYSI Putative uncharacterized protein OS=Oryza... 35 3.0 tr|Q4E064|Q4E064_TRYCR Putative uncharacterized protein OS=Trypa... 35 3.0 tr|Q4E062|Q4E062_TRYCR Putative uncharacterized protein OS=Trypa... 35 3.0 tr|Q4DY73|Q4DY73_TRYCR Putative uncharacterized protein OS=Trypa... 35 3.0 tr|Q4DUZ0|Q4DUZ0_TRYCR Putative uncharacterized protein OS=Trypa... 35 3.0 tr|A6NG74|A6NG74_HUMAN Putative uncharacterized protein PCLO OS=... 35 3.0 tr|A4D1A8|A4D1A8_HUMAN Similar to Piccolo protein (Aczonin) OS=H... 35 3.0
>tr|A7R5S5|A7R5S5_VITVI Chromosome undetermined scaffold_1043, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00005372001 PE=4 SV=1 Length = 270
Score = 47.8 bits (112), Expect = 6e-04 Identities = 29/68 (42%), Positives = 33/68 (48%) Frame = +2
Query: 446 VRPTSLSSIPPPRESLPKFQKAGTPMQRIDSYQHGPWPWFSSDHPLPLGHPCQGFALPSP 625 VR S++ PPP P P P F + LP GHPC+ FALP P Sbjct: 7 VRSESVAQPPPPPPPPPP-----------------PAPVFLG-YNLPPGHPCENFALPPP 48
Query: 626 PADKKRTG 649 PADKKRTG Sbjct: 49 PADKKRTG 56
>tr|A7R4V6|A7R4V6_VITVI Chromosome undetermined scaffold_791, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00004722001 PE=4 SV=1 Length = 356
Score = 47.0 bits (110), Expect = 0.001 Identities = 19/23 (82%), Positives = 20/23 (86%) Frame = +2
Query: 581 LPLGHPCQGFALPSPPADKKRTG 649 LP GHPC+ FALP PPADKKRTG Sbjct: 149 LPPGHPCENFALPPPPADKKRTG 171
>tr|A7R4P9|A7R4P9_VITVI Chromosome undetermined scaffold_754, whole genome shotgun sequence (Fragment) OS=Vitis vinifera GN=GSVIVT00004615001 PE=4 SV=1 Length = 581
Score = 47.0 bits (110), Expect = 0.001 Identities = 19/23 (82%), Positives = 20/23 (86%) Frame = +2
Query: 581 LPLGHPCQGFALPSPPADKKRTG 649 LP GHPC+ FALP PPADKKRTG Sbjct: 132 LPPGHPCENFALPPPPADKKRTG 154
>tr|A5BFE3|A5BFE3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_008182 PE=4 SV=1 Length = 570
Score = 47.0 bits (110), Expect = 0.001 Identities = 19/23 (82%), Positives = 20/23 (86%) Frame = +2
Query: 581 LPLGHPCQGFALPSPPADKKRTG 649 LP GHPC+ FALP PPADKKRTG Sbjct: 164 LPPGHPCENFALPPPPADKKRTG 186
>tr|Q9FZ97|Q9FZ97_ARATH F3H9.11 protein OS=Arabidopsis thaliana GN=At1g28240 PE=4 SV=1 Length = 581
Score = 44.7 bits (104), Expect = 0.005 Identities = 19/33 (57%), Positives = 21/33 (63%) Frame = +2
Query: 551 PWPWFSSDHPLPLGHPCQGFALPSPPADKKRTG 649 P P + LP GHPC F LP PPAD+KRTG Sbjct: 132 PPPIHFLGYSLPQGHPCNSFTLPPPPADRKRTG 164
>tr|Q8W4K7|Q8W4K7_ARATH Putative uncharacterized protein At1g28240; F3H9.11 (Putative uncharacterized protein At1g28240) OS=Arabidopsis thaliana GN=At1g28240/F3H9.11 PE=2 SV=1 Length = 581
Score = 44.7 bits (104), Expect = 0.005 Identities = 19/33 (57%), Positives = 21/33 (63%) Frame = +2
Query: 551 PWPWFSSDHPLPLGHPCQGFALPSPPADKKRTG 649 P P + LP GHPC F LP PPAD+KRTG Sbjct: 132 PPPIHFLGYSLPQGHPCNSFTLPPPPADRKRTG 164
>tr|B4FNS1|B4FNS1_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 176
Score = 41.2 bits (95), Expect = 0.055 Identities = 32/96 (33%), Positives = 39/96 (40%), Gaps = 12/96 (12%) Frame = +2
Query: 368 QHQNLSMKDIQFSVSSSLHP-------EHETMGVRPTSLSSI-----PPPRESLPKFQKA 511 +H +LS D S SSL P +H +RP S PP R LP + Sbjct: 65 EHSSLST-DSSSSAPSSLRPAFLSTAQQHPFPWLRPPIRSHSCSWLRPPFRLPLPLSKTL 123
Query: 512 GTPMQRIDSYQHGPWPWFSSDHPLPLGHPCQGFALP 619 P R+D +Q PWP SS P P PC P Sbjct: 124 AAPKWRLDFFQSSPWPSSSSARPPPSFSPCAAARSP 159
>tr|Q4CZJ9|Q4CZJ9_TRYCR Putative uncharacterized protein OS=Trypanosoma cruzi GN=Tc00.1047053504201.20 PE=4 SV=1 Length = 149
Score = 38.1 bits (87), Expect = 0.47 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%) Frame = +2
Query: 395 IQFSVSSSLHPEHETMGVRPTSLSSIPPPRESLPKFQKAGTPMQRID---SYQHGPWPW 562 +QFS ++HP + T + +PPPRE + GT +++ S+Q+ W W Sbjct: 57 LQFSPDGTIHPPARSSDADRTGICQLPPPREEKEDTKSGGTTAPQVNAEPSHQNEDWRW 115
>tr|Q5B396|Q5B396_EMENI Putative uncharacterized protein OS=Emericella nidulans GN=AN4984.2 PE=4 SV=1 Length = 471
Score = 37.7 bits (86), Expect = 0.61 Identities = 34/107 (31%), Positives = 50/107 (46%), Gaps = 12/107 (11%) Frame = +2
Query: 293 NIT--SRVTAPKSASDYDTPPDMIFNNQHQN--LSMKDIQFSVSSSLH-----PEHETMG 445 NIT +RV+ P + + PP NNQ++N L+ ++S S+ H P++ ++G Sbjct: 330 NITRSNRVSKPLLSPEGPIPPQYQRNNQYENSWLNPAASEYSPPSAPHSGPTTPDYYSVG 389
Query: 446 VRPTSLSSIPPPRES---LPKFQKAGTPMQRIDSYQHGPWPWFSSDH 577 P SS PPP S +P Q P + SY H P F H Sbjct: 390 --PWGYSSNPPPPYSSTWMPHHQYMPPPRSQPPSYHHTPSYGFPFPH 434
>tr|B6UCQ3|B6UCQ3_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 174
Score = 37.0 bits (84), Expect = 1.0 Identities = 18/42 (42%), Positives = 21/42 (50%) Frame = +2
Query: 473 PPPRESLPKFQKAGTPMQRIDSYQHGPWPWFSSDHPLPLGHP 598 PP R LP + P R+D +Q PWP SS P PL P Sbjct: 18 PPFRPPLPLSKTLAAPKWRLDFFQSSPWPSSSSARPPPLLFP 59
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