DK958090 |
Clone id |
TST39A01NGRL0030_B11 |
Library |
TST39 |
Length |
458 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_B11. 5' end sequence. |
Accession |
DK958090 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GATTAGATAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAGAGAATGTGTGTGTA TTTATCGGGTCTCCCCGCCTGCCCAGCAGCGACGATCTTCTTCTTCTCTCTGCTCTCAGT GCACAAGTCGGAACCCTCTTTGCAGCTGAGGCAAGCGCTTTTCGGGAGTTTGCACCCCTC CTTCCTATGGATGTGCTATGGATGCCATACTTCTTGGGCCTTGCGCAGTGCGATGTGCCC CCCTGCAGCTCAGACACTCCCTCAAATTGCGCTCCGCTCAAGTATGATGATTTTGAGGTG GATACCGATGCGCTGTTTGAATTTTCTTGTCCTTTTTGCTATTTGGAGTATGATATTGGG TCTCTGTGCTCTCACCTTGAAGAGGATCATGGTACCGAGTCCCAATCCGTGATATGTCCG GTATGTGCTGCAAAATCAAGTCCCGACATTGTTGGACA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6H6E6 |
Definition |
sp|Q6H6E6|DI194_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp. japonica |
Align length |
57 |
Score (bit) |
69.7 |
E-value |
6.0e-12 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TJA3 |
Definition |
tr|A9TJA3|A9TJA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
60 |
Score (bit) |
79.7 |
E-value |
7.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958090|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_B11, 5' (458 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TJA3|A9TJA3_PHYPA Predicted protein OS=Physcomitrella paten... 80 7e-14 tr|A9RX96|A9RX96_PHYPA Predicted protein (Fragment) OS=Physcomit... 77 3e-13 tr|A7QPS7|A7QPS7_VITVI Chromosome chr10 scaffold_138, whole geno... 77 4e-13 tr|B7FME8|B7FME8_MEDTR Putative uncharacterized protein OS=Medic... 76 7e-13 tr|A9PAM4|A9PAM4_POPTR Putative uncharacterized protein OS=Popul... 75 2e-12 tr|A9SS49|A9SS49_PHYPA Predicted protein OS=Physcomitrella paten... 74 3e-12 tr|A9NRR0|A9NRR0_PICSI Putative uncharacterized protein OS=Picea... 74 4e-12 tr|B3TLS9|B3TLS9_ELAGV Fiber protein Fb2 OS=Elaeis guineensis va... 73 6e-12 tr|B4FRH9|B4FRH9_MAIZE Fiber protein Fb2 OS=Zea mays PE=2 SV=1 73 8e-12 tr|A9NNC1|A9NNC1_PICSI Putative uncharacterized protein OS=Picea... 72 1e-11 tr|B7E413|B7E413_ORYSJ cDNA clone:006-203-G01, full insert seque... 70 7e-11 tr|B6TL35|B6TL35_MAIZE Fiber protein Fb2 OS=Zea mays PE=2 SV=1 69 9e-11 tr|B6TIV8|B6TIV8_MAIZE Fiber protein Fb2 OS=Zea mays PE=2 SV=1 69 9e-11 tr|B4FJS2|B4FJS2_MAIZE Putative uncharacterized protein OS=Zea m... 69 9e-11 tr|A7P1S7|A7P1S7_VITVI Chromosome chr19 scaffold_4, whole genome... 67 4e-10 tr|A7Q0I1|A7Q0I1_VITVI Chromosome chr7 scaffold_42, whole genome... 64 5e-09 tr|A9NZE0|A9NZE0_PICSI Putative uncharacterized protein OS=Picea... 62 2e-08 tr|B8AWQ7|B8AWQ7_ORYSI Putative uncharacterized protein OS=Oryza... 61 2e-08 tr|B7E6V3|B7E6V3_ORYSJ cDNA clone:001-039-B10, full insert seque... 61 2e-08 tr|A9RX94|A9RX94_PHYPA Predicted protein (Fragment) OS=Physcomit... 58 2e-07 tr|Q8GT87|Q8GT87_GOSBA Fiber protein Fb2 OS=Gossypium barbadense... 57 6e-07 tr|Q4TZT2|Q4TZT2_GOSHI Fb2 OS=Gossypium hirsutum PE=2 SV=1 57 6e-07 tr|B8A789|B8A789_ORYSI Putative uncharacterized protein OS=Oryza... 57 6e-07 tr|B6T3D5|B6T3D5_MAIZE Fiber protein Fb2 OS=Zea mays PE=2 SV=1 56 8e-07 tr|B4FDK3|B4FDK3_MAIZE Fiber protein Fb2 OS=Zea mays PE=2 SV=1 56 8e-07 tr|B7E5F9|B7E5F9_ORYSJ cDNA clone:001-035-D08, full insert seque... 56 1e-06 tr|B6T5L4|B6T5L4_MAIZE Fb2 OS=Zea mays PE=2 SV=1 55 2e-06 tr|B6SGL8|B6SGL8_MAIZE Fb2 OS=Zea mays PE=2 SV=1 55 2e-06 tr|B4FIX0|B4FIX0_MAIZE Fiber protein Fb2 OS=Zea mays PE=2 SV=1 54 4e-06 tr|B7E5V8|B7E5V8_ORYSJ cDNA clone:006-208-C03, full insert seque... 54 5e-06
>tr|A9TJA3|A9TJA3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_195607 PE=4 SV=1 Length = 226
Score = 79.7 bits (195), Expect = 7e-14 Identities = 34/60 (56%), Positives = 45/60 (75%) Frame = +1
Query: 277 LKYDDFEVDTDALFEFSCPFCYLEYDIGSLCSHLEEDHGTESQSVICPVCAAKSSPDIVG 456 + DD + D + EFSCPFCY E+DI +LCSHLE++H ES++ +CPVCAAK S D+VG Sbjct: 30 INLDDVDGDEELRAEFSCPFCYEEFDISALCSHLEDEHCFESRAAMCPVCAAKISKDMVG 89
>tr|A9RX96|A9RX96_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_120830 PE=4 SV=1 Length = 184
Score = 77.4 bits (189), Expect = 3e-13 Identities = 33/57 (57%), Positives = 44/57 (77%) Frame = +1
Query: 286 DDFEVDTDALFEFSCPFCYLEYDIGSLCSHLEEDHGTESQSVICPVCAAKSSPDIVG 456 DD + D D EFSCP+CY E+DI +LCSHLEE+H ES++ +CPVC+AK + D+VG Sbjct: 8 DDVDGDEDMRAEFSCPYCYEEFDIAALCSHLEEEHCFESRAGMCPVCSAKIAKDMVG 64
>tr|A7QPS7|A7QPS7_VITVI Chromosome chr10 scaffold_138, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00003058001 PE=4 SV=1 Length = 104
Score = 77.0 bits (188), Expect = 4e-13 Identities = 30/59 (50%), Positives = 44/59 (74%) Frame = +1
Query: 277 LKYDDFEVDTDALFEFSCPFCYLEYDIGSLCSHLEEDHGTESQSVICPVCAAKSSPDIV 453 L DDFEV+ +A +F CP+CY +YDI SLCSHLE++H ES+ +CP+C+ K + D++ Sbjct: 31 LSIDDFEVEDEARPDFPCPYCYEDYDIASLCSHLEDEHSCESRVTVCPICSVKVARDML 89
>tr|B7FME8|B7FME8_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 234
Score = 76.3 bits (186), Expect = 7e-13 Identities = 31/59 (52%), Positives = 44/59 (74%) Frame = +1
Query: 277 LKYDDFEVDTDALFEFSCPFCYLEYDIGSLCSHLEEDHGTESQSVICPVCAAKSSPDIV 453 L DDF+V+ + +F CP+CY E+DIGSLCSHLE++H ES+ ICPVC+ K + D++ Sbjct: 31 LGIDDFDVEEEVRPDFPCPYCYEEFDIGSLCSHLEDEHSCESRVTICPVCSVKVARDML 89
>tr|A9PAM4|A9PAM4_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 180
Score = 75.1 bits (183), Expect = 2e-12 Identities = 28/56 (50%), Positives = 43/56 (76%) Frame = +1
Query: 286 DDFEVDTDALFEFSCPFCYLEYDIGSLCSHLEEDHGTESQSVICPVCAAKSSPDIV 453 DDFEV+ + +F CP+CY ++DIGSLCSHLE++H ES+ +CP+C+ K + D++ Sbjct: 34 DDFEVEEEVRPDFPCPYCYEDFDIGSLCSHLEDEHSYESKVAVCPICSVKVAQDML 89
>tr|A9SS49|A9SS49_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_233966 PE=4 SV=1 Length = 226
Score = 74.3 bits (181), Expect = 3e-12 Identities = 33/60 (55%), Positives = 40/60 (66%) Frame = +1
Query: 277 LKYDDFEVDTDALFEFSCPFCYLEYDIGSLCSHLEEDHGTESQSVICPVCAAKSSPDIVG 456 L DD + D D EFSCPFCY E+D +LC HLEE+H ES+ +CPVCA K D+VG Sbjct: 30 LNLDDVDGDEDLRAEFSCPFCYEEFDTTALCPHLEEEHCFESRPAMCPVCAVKVPKDMVG 89
>tr|A9NRR0|A9NRR0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 229
Score = 73.9 bits (180), Expect = 4e-12 Identities = 29/58 (50%), Positives = 42/58 (72%) Frame = +1
Query: 283 YDDFEVDTDALFEFSCPFCYLEYDIGSLCSHLEEDHGTESQSVICPVCAAKSSPDIVG 456 +D+ E D D +F+CPFCY ++DI LC HLE++H E+++ +CPVCAAK D+VG Sbjct: 32 FDELEGDDDVRADFTCPFCYEDFDIALLCCHLEDEHCIETKNALCPVCAAKVGKDMVG 89
>tr|B3TLS9|B3TLS9_ELAGV Fiber protein Fb2 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 230
Score = 73.2 bits (178), Expect = 6e-12 Identities = 27/59 (45%), Positives = 44/59 (74%) Frame = +1
Query: 277 LKYDDFEVDTDALFEFSCPFCYLEYDIGSLCSHLEEDHGTESQSVICPVCAAKSSPDIV 453 L DDFE++ + +F CP+CY ++DI SLCSHLE++H ES++ +CP+C+ K + D++ Sbjct: 30 LGIDDFEMEEEVRLDFPCPYCYEDHDITSLCSHLEDEHAFESKAAVCPICSVKVARDML 88
>tr|B4FRH9|B4FRH9_MAIZE Fiber protein Fb2 OS=Zea mays PE=2 SV=1 Length = 239
Score = 72.8 bits (177), Expect = 8e-12 Identities = 29/57 (50%), Positives = 42/57 (73%) Frame = +1
Query: 283 YDDFEVDTDALFEFSCPFCYLEYDIGSLCSHLEEDHGTESQSVICPVCAAKSSPDIV 453 YDD E + D +F CP+CY ++D+ SLC+HLE++H ES+ V CPVC+A+ S D+V Sbjct: 38 YDDIEPEDDLHSDFPCPYCYEDHDVASLCAHLEDEHPFESKIVSCPVCSARISKDLV 94
>tr|A9NNC1|A9NNC1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 225
Score = 72.4 bits (176), Expect = 1e-11 Identities = 31/57 (54%), Positives = 40/57 (70%) Frame = +1
Query: 286 DDFEVDTDALFEFSCPFCYLEYDIGSLCSHLEEDHGTESQSVICPVCAAKSSPDIVG 456 DD +VD D EF+C FC L++DI +LC HLE+ H ES + +CPVCAAK D+VG Sbjct: 29 DDMKVDYDMRAEFTCSFCDLDFDIATLCRHLEDHHPFESSNAVCPVCAAKVGRDMVG 85
|