DK958019 |
Clone id |
TST39A01NGRL0029_O12 |
Library |
TST39 |
Length |
641 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_O12. 5' end sequence. |
Accession |
DK958019 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
GGTCGCAGCATCTTGACAATCGGCACATACTGTACAACACTTCAAAGCTATGTCAGGACG GAAAGAGACGGTCCTGGACCTTGCAAAGTTCGTGGACAAAGGCGTTTCGGTAAAACTTAC GGGCGGCAGGGAAGTTACGGGAACACTAAAGGGATATGATCAACTTTTGAACCTTGTTCT GGATGAAGCCATTGAATACTTACGAGATCAAGATGATCCATTAAAGACTACTGATCAAAC CCGGCCATTGGGTCTCATTGTATGTCGAGGTACTGCGGTGATGCTTGTTGCCCCCACAGA TGGAACAGAGGAAATAGCGAATCCTTTTCTACAGTCAGATGCAGCATAAAGAAATAGCGG GTTCACATTTCTTGTGGAGAGCTTCGATTTCCATGCAAACTGTCACTTCCCTAAAAGACA TTAATCAAAGGCTTCCCCAAATATTCTGCAGATTGAATTGTCTTTTGGCGGCACTCGCAT AATGTTTTGCGGATGTATTCTATGGCAAGGCCACTGCCAATGCTCAGAAAGCAAGTGCAG TTTTCTGATGTTAGCTGGTTTTTAAGTCTCAGCTCATAATATTTACAGCTCTGAAAATTT CAATTGTCGCACAAATTACTTGTATAGGATTACAGCTATTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9UK45 |
Definition |
sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens |
Align length |
96 |
Score (bit) |
124.0 |
E-value |
4.0e-28 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PBG1 |
Definition |
tr|A9PBG1|A9PBG1_POPTR Putative uncharacterized protein OS=Populus trichocarpa |
Align length |
99 |
Score (bit) |
179.0 |
E-value |
2.0e-43 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958019|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0029_O12, 5' (641 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9PBG1|A9PBG1_POPTR Putative uncharacterized protein OS=Popul... 179 2e-43 tr|Q9SI54|Q9SI54_ARATH Putative snRNP splicing factor (At2g03870... 176 1e-42 tr|A7QWV4|A7QWV4_VITVI Chromosome chr13 scaffold_210, whole geno... 175 2e-42 tr|A9RYE3|A9RYE3_PHYPA Predicted protein OS=Physcomitrella paten... 171 3e-41 tr|A9T9R4|A9T9R4_PHYPA Predicted protein OS=Physcomitrella paten... 169 2e-40 tr|Q6ZBS1|Q6ZBS1_ORYSJ Os08g0177700 protein OS=Oryza sativa subs... 166 1e-39 tr|B8BBH1|B8BBH1_ORYSI Putative uncharacterized protein OS=Oryza... 166 1e-39 tr|B6U772|B6U772_MAIZE LSM7-like OS=Zea mays PE=4 SV=1 164 3e-39 tr|B6T6E9|B6T6E9_MAIZE LSM7-like OS=Zea mays PE=2 SV=1 161 4e-38 tr|A3BQ70|A3BQ70_ORYSJ Putative uncharacterized protein OS=Oryza... 150 6e-35 tr|A8IFM6|A8IFM6_CHLRE Small nuclear riboprotein, U6 sm-like pro... 148 2e-34 tr|A4S1J9|A4S1J9_OSTLU Predicted protein OS=Ostreococcus lucimar... 144 5e-33 tr|A7S5M5|A7S5M5_NEMVE Predicted protein OS=Nematostella vectens... 135 2e-30 tr|B7PH70|B7PH70_IXOSC Small nuclear ribonucleoprotein (SnRNP) s... 130 5e-29 tr|B6L7T3|B6L7T3_BRAFL Putative uncharacterized protein OS=Branc... 127 8e-28 tr|A9V574|A9V574_MONBE Predicted protein OS=Monosiga brevicollis... 126 1e-27 tr|A8PQK1|A8PQK1_BRUMA U6 snRNA-associated Sm-like protein LSm7,... 125 2e-27 tr|Q9VJI7|Q9VJI7_DROME CG13277 OS=Drosophila melanogaster GN=CG1... 125 2e-27 tr|Q1EC09|Q1EC09_DROME IP12320p OS=Drosophila melanogaster PE=2 ... 125 2e-27 tr|B4Q7F8|B4Q7F8_DROSI GD21898 OS=Drosophila simulans GN=GD21898... 125 2e-27 tr|B4P9A5|B4P9A5_DROYA GE13166 OS=Drosophila yakuba GN=GE13166 P... 125 2e-27 tr|B4I543|B4I543_DROSE GM17159 OS=Drosophila sechellia GN=GM1715... 125 2e-27 tr|B3NNK2|B3NNK2_DROER GG20109 OS=Drosophila erecta GN=GG20109 P... 125 2e-27 tr|B1PFS0|B1PFS0_DROME CG13277 (Fragment) OS=Drosophila melanoga... 125 2e-27 tr|B1PFR5|B1PFR5_DROME CG13277 (Fragment) OS=Drosophila melanoga... 125 2e-27 tr|B1PFP9|B1PFP9_DROME CG13277 (Fragment) OS=Drosophila melanoga... 125 2e-27 tr|B4MYW5|B4MYW5_DROWI GK18159 OS=Drosophila willistoni GN=GK181... 125 3e-27 tr|B4LUF8|B4LUF8_DROVI GJ24083 OS=Drosophila virilis GN=GJ24083 ... 125 3e-27 tr|B4KHX4|B4KHX4_DROMO GI14941 OS=Drosophila mojavensis GN=GI149... 125 3e-27 tr|B4JBJ0|B4JBJ0_DROGR GH10206 OS=Drosophila grimshawi GN=GH1020... 125 3e-27
>tr|A9PBG1|A9PBG1_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 99
Score = 179 bits (453), Expect = 2e-43 Identities = 88/99 (88%), Positives = 94/99 (94%) Frame = +2
Query: 50 MSGRKETVLDLAKFVDKGVSVKLTGGREVTGTLKGYDQLLNLVLDEAIEYLRDQDDPLKT 229 MSGRKETVLDLAKFVDKGV VKLTGGR+VTGTLKGYDQLLNLVLDEA+E+LRD DDPLKT Sbjct: 1 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDADDPLKT 60
Query: 230 TDQTRPLGLIVCRGTAVMLVAPTDGTEEIANPFLQSDAA 346 TDQTR LGLIVCRGTAVMLV+PTDGT+EIANPF+Q D A Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFVQPDGA 99
>tr|Q9SI54|Q9SI54_ARATH Putative snRNP splicing factor (At2g03870) OS=Arabidopsis thaliana GN=At2g03870 PE=2 SV=1 Length = 99
Score = 176 bits (446), Expect = 1e-42 Identities = 86/98 (87%), Positives = 94/98 (95%) Frame = +2
Query: 50 MSGRKETVLDLAKFVDKGVSVKLTGGREVTGTLKGYDQLLNLVLDEAIEYLRDQDDPLKT 229 MSGRKETVLDLAKFVDKGV VKLTGGR+VTGTLKGYDQLLNLVLDEA+E++RD DDPLKT Sbjct: 1 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKT 60
Query: 230 TDQTRPLGLIVCRGTAVMLVAPTDGTEEIANPFLQSDA 343 TDQTR LGLIVCRGTAVMLV+PTDGTEEIANPF+ ++A Sbjct: 61 TDQTRRLGLIVCRGTAVMLVSPTDGTEEIANPFVTAEA 98
>tr|A7QWV4|A7QWV4_VITVI Chromosome chr13 scaffold_210, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00008837001 PE=4 SV=1 Length = 113
Score = 175 bits (443), Expect = 2e-42 Identities = 86/98 (87%), Positives = 92/98 (93%) Frame = +2
Query: 53 SGRKETVLDLAKFVDKGVSVKLTGGREVTGTLKGYDQLLNLVLDEAIEYLRDQDDPLKTT 232 SGRKETVLDLAKFVDKGV VKLTGGR+VTGTLKGYDQLLNLVLDEA+E+LRD DDP KTT Sbjct: 16 SGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPQKTT 75
Query: 233 DQTRPLGLIVCRGTAVMLVAPTDGTEEIANPFLQSDAA 346 DQTR LGLIVCRGTAVMLV+PTDGT+EIANPF+Q D A Sbjct: 76 DQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFIQPDGA 113
>tr|A9RYE3|A9RYE3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_206902 PE=4 SV=1 Length = 102
Score = 171 bits (434), Expect = 3e-41 Identities = 86/97 (88%), Positives = 91/97 (93%) Frame = +2
Query: 50 MSGRKETVLDLAKFVDKGVSVKLTGGREVTGTLKGYDQLLNLVLDEAIEYLRDQDDPLKT 229 MSGRKETVLDLAKFVD+GVSVKL+GGR+VTGTLKGYDQLLNLVLDEA E LRD DDPLKT Sbjct: 1 MSGRKETVLDLAKFVDRGVSVKLSGGRQVTGTLKGYDQLLNLVLDEATENLRDSDDPLKT 60
Query: 230 TDQTRPLGLIVCRGTAVMLVAPTDGTEEIANPFLQSD 340 TDQ R LGLIVCRGTAVMLVAPTDGTEEIANPFL ++ Sbjct: 61 TDQMRQLGLIVCRGTAVMLVAPTDGTEEIANPFLANE 97
>tr|A9T9R4|A9T9R4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_192923 PE=4 SV=1 Length = 102
Score = 169 bits (427), Expect = 2e-40 Identities = 84/97 (86%), Positives = 90/97 (92%) Frame = +2
Query: 50 MSGRKETVLDLAKFVDKGVSVKLTGGREVTGTLKGYDQLLNLVLDEAIEYLRDQDDPLKT 229 MSGRKETVLDLAKFVD+GVSVKL+GGR+VTG LKGYDQLLNLVLDEA E LRD DDP+KT Sbjct: 1 MSGRKETVLDLAKFVDRGVSVKLSGGRQVTGILKGYDQLLNLVLDEATENLRDSDDPMKT 60
Query: 230 TDQTRPLGLIVCRGTAVMLVAPTDGTEEIANPFLQSD 340 TDQ R LGLIVCRGTAVMLVAPTDGTEEI NPFLQ++ Sbjct: 61 TDQIRQLGLIVCRGTAVMLVAPTDGTEEIPNPFLQNE 97
>tr|Q6ZBS1|Q6ZBS1_ORYSJ Os08g0177700 protein OS=Oryza sativa subsp. japonica GN=P0583B06.25 PE=4 SV=1 Length = 98
Score = 166 bits (420), Expect = 1e-39 Identities = 84/99 (84%), Positives = 92/99 (92%) Frame = +2
Query: 50 MSGRKETVLDLAKFVDKGVSVKLTGGREVTGTLKGYDQLLNLVLDEAIEYLRDQDDPLKT 229 MSGRKETVLDLAKFVDKGV VKLTGGR+VTGTLKGYDQLLNLVLDEA+E+ R+QDDPLK Sbjct: 1 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKL 60
Query: 230 TDQTRPLGLIVCRGTAVMLVAPTDGTEEIANPFLQSDAA 346 + +TR LGLIVCRGTAVMLV+PTDGT+EIANPF QSD A Sbjct: 61 SGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPF-QSDGA 98
>tr|B8BBH1|B8BBH1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28028 PE=4 SV=1 Length = 98
Score = 166 bits (420), Expect = 1e-39 Identities = 84/99 (84%), Positives = 92/99 (92%) Frame = +2
Query: 50 MSGRKETVLDLAKFVDKGVSVKLTGGREVTGTLKGYDQLLNLVLDEAIEYLRDQDDPLKT 229 MSGRKETVLDLAKFVDKGV VKLTGGR+VTGTLKGYDQLLNLVLDEA+E+ R+QDDPLK Sbjct: 1 MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKL 60
Query: 230 TDQTRPLGLIVCRGTAVMLVAPTDGTEEIANPFLQSDAA 346 + +TR LGLIVCRGTAVMLV+PTDGT+EIANPF QSD A Sbjct: 61 SGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPF-QSDGA 98
>tr|B6U772|B6U772_MAIZE LSM7-like OS=Zea mays PE=4 SV=1 Length = 98
Score = 164 bits (416), Expect = 3e-39 Identities = 81/98 (82%), Positives = 89/98 (90%) Frame = +2
Query: 50 MSGRKETVLDLAKFVDKGVSVKLTGGREVTGTLKGYDQLLNLVLDEAIEYLRDQDDPLKT 229 M+GRKET LDLAKFVDKGV VKLTGGR+VTGTLKGYDQLLNLVLDEA+EY R+QDDPLK Sbjct: 1 MAGRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEYEREQDDPLKL 60
Query: 230 TDQTRPLGLIVCRGTAVMLVAPTDGTEEIANPFLQSDA 343 + +TR LGLIVCRGTAVMLV+PTDGT+EIANPFL A Sbjct: 61 SGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFLAEGA 98
>tr|B6T6E9|B6T6E9_MAIZE LSM7-like OS=Zea mays PE=2 SV=1 Length = 156
Score = 161 bits (407), Expect = 4e-38 Identities = 80/98 (81%), Positives = 88/98 (89%) Frame = +2
Query: 50 MSGRKETVLDLAKFVDKGVSVKLTGGREVTGTLKGYDQLLNLVLDEAIEYLRDQDDPLKT 229 M+GRKET LDLAKFVDKGV VKLTGGR+VTGTLKGYDQLLNLVLDEA+E R+QDDPLK Sbjct: 59 MAGRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVENEREQDDPLKL 118
Query: 230 TDQTRPLGLIVCRGTAVMLVAPTDGTEEIANPFLQSDA 343 + +TR LGLIVCRGTAVMLV+PTDGT+EIANPFL A Sbjct: 119 SGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFLADGA 156
>tr|A3BQ70|A3BQ70_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_025192 PE=4 SV=1 Length = 97
Score = 150 bits (379), Expect = 6e-35 Identities = 79/99 (79%), Positives = 87/99 (87%) Frame = +2
Query: 50 MSGRKETVLDLAKFVDKGVSVKLTGGREVTGTLKGYDQLLNLVLDEAIEYLRDQDDPLKT 229 MSGRKETVLDLAKFVDKGV V G + VTGTLKGYDQLLNLVLDEA+E+ R+QDDPLK Sbjct: 1 MSGRKETVLDLAKFVDKGVPVSFYG-QSVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKL 59
Query: 230 TDQTRPLGLIVCRGTAVMLVAPTDGTEEIANPFLQSDAA 346 + +TR LGLIVCRGTAVMLV+PTDGT+EIANPF QSD A Sbjct: 60 SGKTRQLGLIVCRGTAVMLVSPTDGTDEIANPF-QSDGA 97
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