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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958001
Clone id TST39A01NGRL0029_N18
Library
Length 604
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_N18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
TGGTAAACTCAAACGCCACATTAGCTTTAGTTTAAGCTTTCTGTTAGCCATTTTGGCACT
GTTTATGGATCTTCCATCTGATGGATCGCATCTACCACCTCTCTTTCCTTGCCTCCCCGT
TGATTCTGAGCTCGTGTAGCTCGGCAATTGTGTTGTACTCTTAAATTGCAAACCTGTGCA
GATCCAAAGCTTTTGAAACGAATCACAAGAGTTCAAGTATAAGAACAGCTTCGGCCGGCT
ATCTAAACATGGAGGTTTCTCCTTGTCTTGTGATTCCAATCATGTCGCTGTTGCTAACGT
TCTCCTGCACTTCTTGTTCAAGCATGGACTCATCCATATCTTATGAGGAGTATTGTGATG
ACATTTCAGAGGACGCTGGACATCACTATGACACTTCTTCAGCTAACCACCTAGGCTTCC
GTAGGGCTGTCTCTGCAGGCGGGTCCCCATTGTTCAGCACAGATGTAACAGGTTTTTCTC
TTCGAAGGTCAGGCAGGTCAGCATATTTTTCAACTCTTGCTTTGAAGCTAGAAGAGGAGC
AAGGGAAACAGAGGATTGTTGTTGAGGCCTCTCTTCTGTTACGAAACCACAGTTTCCTTT
GGTC
■■Homology search results ■■ -
sp_hit_id A6LEI5
Definition sp|A6LEI5|RS3_PARD8 30S ribosomal protein S3 OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
Align length 33
Score (bit) 31.6
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958001|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_N18, 5'
         (604 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6LEI5|RS3_PARD8 30S ribosomal protein S3 OS=Parabacteroides ...    32   3.3  
sp|P15217|EGIP_ANTCR Exogastrula-inducing polypeptide OS=Anthoci...    32   3.3  
sp|Q76LT8|UBP48_RAT Ubiquitin carboxyl-terminal hydrolase 48 OS=...    31   5.6  
sp|Q8A482|RS3_BACTN 30S ribosomal protein S3 OS=Bacteroides thet...    31   5.6  
sp|Q64NL4|RS3_BACFR 30S ribosomal protein S3 OS=Bacteroides frag...    31   5.6  
sp|Q5L8B5|RS3_BACFN 30S ribosomal protein S3 OS=Bacteroides frag...    31   5.6  
sp|P12342|IL2RA_BOVIN Interleukin-2 receptor alpha chain OS=Bos ...    30   9.5  

>sp|A6LEI5|RS3_PARD8 30S ribosomal protein S3 OS=Parabacteroides
           distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152)
           GN=rpsC PE=3 SV=1
          Length = 244

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 192 KLWICTGLQFKSTTQLPSYTSSESTGRQGKRGG 94
           K+WIC G  +      PS+T+++ TGR+    G
Sbjct: 198 KVWICRGEVYGKRDLAPSFTAAKETGRRNDNAG 230


>sp|P15217|EGIP_ANTCR Exogastrula-inducing polypeptide
           OS=Anthocidaris crassispina PE=1 SV=2
          Length = 325

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 24/71 (33%), Positives = 29/71 (40%)
 Frame = -2

Query: 213 NSCDSFQKLWICTGLQFKSTTQLPSYTSSESTGRQGKRGGRCDPSDGRSINSAKMANRKL 34
           NSCD F K   C    F  TT    Y  +   G +    G C P   R I    M  R  
Sbjct: 189 NSCDGFGK---CEKSTFGRTTG--QYICNCDDGYRNNAYGGCSPRTEREIEYLSMIARDQ 243

Query: 33  KLKLMWRLSLP 1
           +L++  R SLP
Sbjct: 244 ELEMQARDSLP 254


>sp|Q76LT8|UBP48_RAT Ubiquitin carboxyl-terminal hydrolase 48
           OS=Rattus norvegicus GN=Usp48 PE=1 SV=1
          Length = 1036

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 22/112 (19%)
 Frame = -2

Query: 360 HHNTPHKIWMSPCLNKKCRRT----------------LATAT*LESQDKEKPPCLDSRPK 229
           H  T ++IW+ PC+   CRR                 L         + + P C   +  
Sbjct: 27  HIETAYRIWLEPCIRGVCRRNCRGNPNCLVGIGEHIWLGEIDENSFHNIDDPNCERRKKN 86

Query: 228 LFLYLN----SC--DSFQKLWICTGLQFKSTTQLPSYTSSESTGRQGKRGGR 91
            F+ L     SC  ++F ++W    L+ +    L   T S+ T   G RGG+
Sbjct: 87  SFVGLTNLGASCYVNTFLQVWF-LNLELRQALYLCPSTCSDYTKGDGIRGGK 137


>sp|Q8A482|RS3_BACTN 30S ribosomal protein S3 OS=Bacteroides
           thetaiotaomicron GN=rpsC PE=3 SV=1
          Length = 243

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 192 KLWICTGLQFKSTTQLPSYTSSESTGRQGKRGG 94
           K+WIC G  F      P++T S+ +GR G  GG
Sbjct: 198 KVWICRGEVFGKKELAPNFTQSKESGR-GNNGG 229


>sp|Q64NL4|RS3_BACFR 30S ribosomal protein S3 OS=Bacteroides
           fragilis GN=rpsC PE=3 SV=1
          Length = 244

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 192 KLWICTGLQFKSTTQLPSYTSSESTGRQGKRGG 94
           K+WIC G  F      P++T S+ +GR G  GG
Sbjct: 198 KVWICRGEVFGKRELAPNFTQSKESGR-GNNGG 229


>sp|Q5L8B5|RS3_BACFN 30S ribosomal protein S3 OS=Bacteroides
           fragilis (strain ATCC 25285 / NCTC 9343) GN=rpsC PE=3
           SV=1
          Length = 244

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 192 KLWICTGLQFKSTTQLPSYTSSESTGRQGKRGG 94
           K+WIC G  F      P++T S+ +GR G  GG
Sbjct: 198 KVWICRGEVFGKRELAPNFTQSKESGR-GNNGG 229


>sp|P12342|IL2RA_BOVIN Interleukin-2 receptor alpha chain OS=Bos
           taurus GN=IL2RA PE=2 SV=1
          Length = 275

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -1

Query: 550 CFPCSSSSFKARVEKYADLPDLRREKPVTSVLNNGDPPAETAL 422
           CF  S+S  K +V++    P+  REK  T   N   PP E  L
Sbjct: 77  CFCNSTSPAKNQVKQVTPAPEEHREKKHTDAQNQTQPPEEADL 119
tr_hit_id Q8PR62
Definition tr|Q8PR62|Q8PR62_XANAC Metalloprotease OS=Xanthomonas axonopodis pv. citri
Align length 62
Score (bit) 33.5
E-value 9.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958001|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_N18, 5'
         (604 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8PR62|Q8PR62_XANAC Metalloprotease OS=Xanthomonas axonopodis...    33   9.8  
tr|Q3BZK7|Q3BZK7_XANC5 Zinc metalloprotease OS=Xanthomonas campe...    33   9.8  

>tr|Q8PR62|Q8PR62_XANAC Metalloprotease OS=Xanthomonas axonopodis
           pv. citri GN=XAC0104 PE=4 SV=1
          Length = 356

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = +3

Query: 351 YCDDISEDAGHHYDTSSANHLGFRRAVSAGGSPLFSTD------VTGFSLRRSGRSAYFS 512
           Y D   +D G HY++   NH  +R AV+ GG+    T       +TG  L  S   A F+
Sbjct: 265 YVDTQEDDGGVHYNSGIPNHAFYRAAVAIGGAAWEKTGRIWYRALTGGELAASADFATFA 324

Query: 513 TL 518
            L
Sbjct: 325 DL 326


>tr|Q3BZK7|Q3BZK7_XANC5 Zinc metalloprotease OS=Xanthomonas
           campestris pv. vesicatoria (strain 85-10) GN=XCV0075
           PE=4 SV=1
          Length = 354

 Score = 33.5 bits (75), Expect = 9.8
 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
 Frame = +3

Query: 351 YCDDISEDAGHHYDTSSANHLGFRRAVSAGGSPLFSTD------VTGFSLRRSGRSAYFS 512
           Y D   +D G HY++   NH  +R AV+ GG+    T       +TG  L      A F+
Sbjct: 263 YVDTQEDDGGVHYNSGIPNHAFYRAAVAIGGAAWEKTGRIWYRALTGGELAAGADFATFA 322

Query: 513 TLALKL 530
            L +++
Sbjct: 323 ALTVEV 328