DK957752
Clone id TST39A01NGRL0029_D03
Library
Length 641
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_D03. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CCTTTCTCTCTCTCGCGCACTGTGCCCCCTTGCCCCCTACCTATCCATCACCTCTTTTGA
AAACCCCCTTTCTCCCGTCCCCCTATCCCTCAGCAACCAAGCAAGCTGGAGTGCCGTCCC
GTCCTTTATCTTCTTCCCCCCCTCTCCTGCTTCTCAGATTTCCCTCTAGATGTGCAGGGC
TGCTCAACTCTGAGGAGGGTAGTTTTCTCAAAGGGGCGTAGGCCAGAATACCCGATTTCT
GTCCTGGGAAGATGTCGCACCTAGCAACCCTGAGCTTGACGGACCCACGCTCAGAGATGC
GTGACTGTGGCAGCCTCAGATCTCCCGAGAGCTCCGAGGAGAAGATTATCTGCCCAAAGC
CTCAGCGTGTTGCAGTGGCAAACCTTAGATCTGTAGATTTCATCAAGCCCATCCGCCAAG
TGAGAAGCATGTCTCCTGTTGCAATTGATGGCAGCGATGCTGGCTGTGAGATCTTGGATA
TCTTTCTAAGCAAGAGCCCATATGGGGACTTTGGATGTTCTCCCCCGTTTTTTTCCGGTT
CTCCTCCTTCCAGAGCCGCGAATCCGCTGGTGCGGGACTCACAATTTTTGCATCCACATG
CATACCCTGTGGCAACCTCACAAGCCAAGGTTCCACAAGGA
■■Homology search results ■■ -
sp_hit_id A0QUP1
Definition sp|A0QUP1|DNLI_MYCS2 Probable DNA ligase OS=Mycobacterium smegmatis
Align length 125
Score (bit) 32.0
E-value 2.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK957752|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_D03, 5'
(627 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A0QUP1|DNLI_MYCS2 Probable DNA ligase OS=Mycobacterium smegma... 32 2.7
sp|Q167K4|PUR5_ROSDO Phosphoribosylformylglycinamidine cyclo-lig... 32 3.5
sp|Q8N1G0|ZN687_HUMAN Zinc finger protein 687 OS=Homo sapiens GN... 32 3.5
sp|Q6FZK1|PUR5_BARQU Phosphoribosylformylglycinamidine cyclo-lig... 31 4.5
sp|O81316|SCL6_ARATH Scarecrow-like protein 6 OS=Arabidopsis tha... 31 4.6
sp|P31695|NOTC4_MOUSE Neurogenic locus notch homolog protein 4 O... 30 7.7

>sp|A0QUP1|DNLI_MYCS2 Probable DNA ligase OS=Mycobacterium smegmatis
GN=lig PE=3 SV=1
Length = 509

Score = 32.0 bits (71), Expect = 2.7
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 2/125 (1%)
Frame = -2

Query: 509 GEHPKSPYGLLLRKISKISQPASLPSIATGDMLLTWRMGLMKSTDLRFATATR*GFGQII 330
GE P+ G+ + + PA+ PS+ D + R+ +K+ + + ATR G +
Sbjct: 50 GELPQRQIGVGWAALRTLPPPAATPSLTVDD--VDDRLSTIKAVAGKGSQATRAGLVHEL 107

Query: 329 FSSELSGDLRLPQSRISERGSVKLRVARCDIFPGQKSGILAYAPLRK--LPSSELSSPAH 156
FS+ + + + +S ++ G +G++A A + LP++E+ A
Sbjct: 108 FSAATDPEQKFLRHLLSG-----------ELRQGALAGVMADAVAKAAGLPAAEIRRAAM 156

Query: 155 LEGNL 141
L GNL
Sbjct: 157 LAGNL 161


>sp|Q167K4|PUR5_ROSDO Phosphoribosylformylglycinamidine cyclo-ligase
OS=Roseobacter denitrificans (strain ATCC 33942 / OCh
114) GN=purM PE=3 SV=1
Length = 348

Score = 31.6 bits (70), Expect = 3.5
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = -2

Query: 611 ACEVATGYACGCKNCESRTSGFAALEGGEPEKNGGEHPKSPYGLLLRKISKISQPASLPS 432
A + G A GC+ AL GGE + G +P + L + + + A+LP+
Sbjct: 121 AARIIEGIALGCERAG------CALIGGETAEMPGMYPAGDFDLAGFSVGAMERGAALPA 174

Query: 431 -IATGDMLL 408
+A GD+LL
Sbjct: 175 HVAQGDVLL 183


>sp|Q8N1G0|ZN687_HUMAN Zinc finger protein 687 OS=Homo sapiens
GN=ZNF687 PE=1 SV=1
Length = 1237

Score = 31.6 bits (70), Expect = 3.5
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1

Query: 4 HCAPLPPTYPSPLLKTPFLPSPYPSATKQA 93
H PLPP+ PSP + P P+PS+ + A
Sbjct: 173 HSDPLPPSAPSPTREGALTPPPFPSSFELA 202


>sp|Q6FZK1|PUR5_BARQU Phosphoribosylformylglycinamidine cyclo-ligase
OS=Bartonella quintana GN=purM PE=3 SV=1
Length = 361

Score = 31.2 bits (69), Expect = 4.5
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2

Query: 602 VATGYACGCKNCESRTSGFAALEGGEPEKNGGEHPKSPYGLLLRKISKISQPASLPS--I 429
+ +G A GC+ AAL GGE + G + K Y L + + A LPS +
Sbjct: 131 IVSGIAVGCQQAG------AALIGGETAEMPGMYAKGDYDLAGFAVGATERSALLPSKDL 184

Query: 428 ATGDMLL 408
A GD++L
Sbjct: 185 AEGDIIL 191


>sp|O81316|SCL6_ARATH Scarecrow-like protein 6 OS=Arabidopsis
thaliana GN=SLC6 PE=2 SV=1
Length = 558

Score = 31.2 bits (69), Expect = 4.6
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +1

Query: 295 GSLRSPESSEEKIICPKPQRVAVANLRSVDFIKPIRQVRSMSPVAIDGSDAGCEILDIFL 474
GS+ P SSE++ + + ++L V +R V+ +SP I SD GCE D+
Sbjct: 383 GSISWPNSSEKEAVAVNISAASFSHLPLV-----LRFVKHLSPTIIVCSDRGCERTDLPF 437

Query: 475 SK 480
S+
Sbjct: 438 SQ 439


>sp|P31695|NOTC4_MOUSE Neurogenic locus notch homolog protein 4 OS=Mus
musculus GN=Notch4 PE=1 SV=2
Length = 1964

Score = 30.4 bits (67), Expect = 7.7
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = -2

Query: 575 KNCESRTSGFAALEGGEPEKNGGEHPKS--PY--GLLLRKISKISQPASLPSIATGDML 411
K ES +GF + G + + G EHP S P+ GLLLR ++ ++ +L + G +L
Sbjct: 1368 KETESLGAGFVVVMGVDLSRCGPEHPASRCPWDSGLLLRFLAAMAAVGALEPLLPGPLL 1426


tr_hit_id A9NS33
Definition tr|A9NS33|A9NS33_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 134
Score (bit) 57.4
E-value 7.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK957752|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_D03, 5'
(627 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NS33|A9NS33_PICSI Putative uncharacterized protein OS=Picea... 57 7e-07
tr|A9RTU3|A9RTU3_PHYPA Predicted protein OS=Physcomitrella paten... 57 9e-07
tr|A9S4R0|A9S4R0_PHYPA Predicted protein OS=Physcomitrella paten... 57 1e-06
tr|A9NLR6|A9NLR6_PICSI Putative uncharacterized protein OS=Picea... 56 2e-06
tr|A7P385|A7P385_VITVI Chromosome chr1 scaffold_5, whole genome ... 54 1e-05
tr|A5AES8|A5AES8_VITVI Putative uncharacterized protein OS=Vitis... 54 1e-05
tr|A8TU70|A8TU70_PAESU Putative uncharacterized protein OS=Paeon... 46 0.002
tr|A9NLK5|A9NLK5_PICSI Putative uncharacterized protein OS=Picea... 45 0.005
tr|Q38JI3|Q38JI3_SOLTU Putative uncharacterized protein OS=Solan... 43 0.014
tr|B8LMK2|B8LMK2_PICSI Putative uncharacterized protein OS=Picea... 43 0.014
tr|Q1KUV3|Q1KUV3_9ROSI Putative uncharacterized protein OS=Cleom... 42 0.040
tr|Q1KUR8|Q1KUR8_9ROSI Putative uncharacterized protein OS=Cleom... 41 0.052
tr|Q9LF17|Q9LF17_ARATH Putative uncharacterized protein T21H19_3... 40 0.15
tr|Q9FPI4|Q9FPI4_ARATH AT5g16110 (Putative uncharacterized prote... 40 0.15
tr|Q0WL40|Q0WL40_ARATH Putative uncharacterized protein At5g1611... 40 0.15
tr|Q2V996|Q2V996_SOLTU Putative uncharacterized protein OS=Solan... 39 0.33
tr|A9NYP6|A9NYP6_PICSI Putative uncharacterized protein OS=Picea... 37 0.97
tr|Q8LF93|Q8LF93_ARATH Putative uncharacterized protein (At3g025... 37 1.3
tr|A9PDT4|A9PDT4_POPTR Putative uncharacterized protein OS=Popul... 36 2.2
tr|A8X9A1|A8X9A1_CAEBR Putative uncharacterized protein OS=Caeno... 36 2.2
tr|B6T7H6|B6T7H6_MAIZE Putative uncharacterized protein OS=Zea m... 35 2.8
tr|A7PAQ8|A7PAQ8_VITVI Chromosome chr14 scaffold_9, whole genome... 35 2.8
tr|A6EE86|A6EE86_9SPHI Putative uncharacterized protein OS=Pedob... 35 3.7
tr|A9RG87|A9RG87_PHYPA Predicted protein OS=Physcomitrella paten... 35 3.7
tr|B4JLM3|B4JLM3_DROGR GH12892 OS=Drosophila grimshawi GN=GH1289... 35 4.8
tr|Q9CA32|Q9CA32_ARATH Putative uncharacterized protein T26J14.6... 35 4.8
tr|A5PAW3|A5PAW3_9SPHN Methionine synthase I cobalamin-binding d... 34 6.3
tr|Q2CDC3|Q2CDC3_9RHOB Phosphoribosylformylglycinamidine cyclo-l... 34 8.1
tr|B7FGX3|B7FGX3_MEDTR Putative uncharacterized protein OS=Medic... 34 8.2

>tr|A9NS33|A9NS33_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 166

Score = 57.4 bits (137), Expect = 7e-07
Identities = 47/134 (35%), Positives = 61/134 (45%), Gaps = 8/134 (5%)
Frame = +1

Query: 238 MSHLATLSLTDPRSEMRDCGSLRSP---ESSEEKIICPKPQRVAVANLRSVDFIKPIRQV 408
M HLA + EM++ G R+ E EE + CPKP+R +A + K R+
Sbjct: 1 MQHLAAKNNLVESGEMKEMGRPRAAFMREKCEEVVFCPKPRRAGLAINPIPELSKSTRRH 60

Query: 409 RSMSPVAIDGSDAGCEILDIFLSKS---PYXXXXXXXXXXXXXXXXRAANPLVRDSQFLH 579
RS SP + S+ G EILDIFLS+S RA NPLV D F+H
Sbjct: 61 RSHSP-EYNESEPGVEILDIFLSRSGCGDSLNFGCSPPYFNGSPPSRADNPLVHDINFIH 119

Query: 580 P--HAYPVATSQAK 615
A P S+ K
Sbjct: 120 QIVQASPSTLSKPK 133


>tr|A9RTU3|A9RTU3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_160948 PE=4 SV=1
Length = 183

Score = 57.0 bits (136), Expect = 9e-07
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Frame = +1

Query: 313 ESSEEKIICPKPQRVAVANLRSVDFIKPIRQVRSMSPVAIDGSDAGCEILDIFLSKSPY- 489
E EE++ICP+P+R N+ +F+KP R+ +S S ++ S A E+LDIFL+K Y
Sbjct: 39 EGGEEELICPQPRRPTSVNIPGGEFMKPTRRHKSKSSARVE-SVACFELLDIFLNKGGYR 97

Query: 490 --XXXXXXXXXXXXXXXXRAANPLVRDSQFL 576
RA NPL+ DS+FL
Sbjct: 98 DVPNFGCSPPNFCGSPPARAGNPLIHDSKFL 128


>tr|A9S4R0|A9S4R0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_162842 PE=4 SV=1
Length = 162

Score = 56.6 bits (135), Expect = 1e-06
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Frame = +1

Query: 268 DPRSEMRDCGSLRSP---ESSEEKIICPKPQRVAVANLRSVDFIKPIRQVRSMSPVAIDG 438
D R+E + RS ES EE+++CP+P+R A A+ D +KP R+ +S S +G
Sbjct: 21 DSRTEKNEKRRSRSGLLVESGEEEVLCPRPRRPANASCPVYDSVKPSRRHKSKSSACPEG 80

Query: 439 SDAGCEILDIFLSKSPY---XXXXXXXXXXXXXXXXRAANPLVRDSQFLH 579
E+LDIF+SK Y RA NPL+ D+ FLH
Sbjct: 81 V-VCFELLDIFVSKGGYRDISGFSSSPPTFCGSPPSRAGNPLIHDAAFLH 129


>tr|A9NLR6|A9NLR6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 152

Score = 56.2 bits (134), Expect = 2e-06
Identities = 44/120 (36%), Positives = 60/120 (50%), Gaps = 9/120 (7%)
Frame = +1

Query: 283 MRDCGSLRSP----ESSEEKIICPKPQRVAVANLRSVDFIKPIRQVRSMSPVAIDGSDAG 450
M++ G LR+ +S EE +ICPKP+R+ + N S + K +R RS +P + +AG
Sbjct: 1 MKEMGRLRAAFMREKSEEEVVICPKPRRLGLVNHPSPELPKHLRWQRSHTP-EHNELNAG 59

Query: 451 CEILDIFLSK---SPYXXXXXXXXXXXXXXXXRAANPLVRDSQFLHPH--AYPVATSQAK 615
EILDI LSK S R NPLV D QF+H + P A S+ K
Sbjct: 60 FEILDIILSKSGCSDSSNLGCSPPYFCGSPPSRVDNPLVHDVQFIHQRVPSSPSAISKPK 119


>tr|A7P385|A7P385_VITVI Chromosome chr1 scaffold_5, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00030344001
PE=4 SV=1
Length = 174

Score = 53.5 bits (127), Expect = 1e-05
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Frame = +1

Query: 304 RSPESSEEK--IICPKPQRVAVANLRSVDFIKPIRQVRSMSPVAIDGSDAGCEILDIFLS 477
RS +SE + ++CPKP+R+ + N VD ++PIR S + + S +G ++LDI L+
Sbjct: 15 RSVPASERRAPVVCPKPRRLGLLNATIVDPLRPIRWHLS-NQTELSDSKSGTDLLDIILA 73

Query: 478 KSPY-----XXXXXXXXXXXXXXXXRAANPLVRDSQFLHPHAYPVATSQAKVPQG 627
K Y R ANPL++D++F P++ VP G
Sbjct: 74 KGGYGAESCTQVASSPPFFSGSPPSRVANPLIQDARFGDEKLNPISPPLVSVPSG 128


>tr|A5AES8|A5AES8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_034771 PE=4 SV=1
Length = 328

Score = 53.5 bits (127), Expect = 1e-05
Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 7/115 (6%)
Frame = +1

Query: 304 RSPESSEEK--IICPKPQRVAVANLRSVDFIKPIRQVRSMSPVAIDGSDAGCEILDIFLS 477
RS +SE + ++CPKP+R+ + N VD ++PIR S + + S +G ++LDI L+
Sbjct: 15 RSVPASERRAPVVCPKPRRLGLLNATIVDPLRPIRWHLS-NQTELSDSKSGTDLLDIILA 73

Query: 478 KSPY-----XXXXXXXXXXXXXXXXRAANPLVRDSQFLHPHAYPVATSQAKVPQG 627
K Y R ANPL++D++F P++ VP G
Sbjct: 74 KGGYGAESCTQVASSPPFFSGSPPSRVANPLIQDARFGDEKLNPISPPLVSVPSG 128


>tr|A8TU70|A8TU70_PAESU Putative uncharacterized protein OS=Paeonia
suffruticosa PE=2 SV=1
Length = 183

Score = 46.2 bits (108), Expect = 0.002
Identities = 36/124 (29%), Positives = 53/124 (42%), Gaps = 6/124 (4%)
Frame = +1

Query: 274 RSEMRDCGSLRSPESSEEKIICPKPQRVAVANLRSVDFIKPIRQVRSMSPVAIDGSDAGC 453
R EMR S+ + + ++CPKP+R+ + + D I+P+R S S AG
Sbjct: 15 REEMRSPVSIPMSDR-RDSVVCPKPRRMGLLDSTISDPIRPLRWHLSHHQSEYSDSRAGT 73

Query: 454 EILDIFLSKSPY------XXXXXXXXXXXXXXXXRAANPLVRDSQFLHPHAYPVATSQAK 615
++LDI LSK Y R ANP+V D++F P A Q
Sbjct: 74 DLLDIILSKGGYSVEQSGNQLASSPPFFSGSPPSRVANPVVLDARFGDEKITPSAPLQPL 133

Query: 616 VPQG 627
+ G
Sbjct: 134 LSPG 137


>tr|A9NLK5|A9NLK5_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 177

Score = 44.7 bits (104), Expect = 0.005
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Frame = +1

Query: 232 GKMSHLATLS----LTDPRSEMRDCGSLRSPESSEEKIICPKPQRVAVANLRSVD--FIK 393
G M LATL+ L D +R + + S+ ++ICP+P+R+ + + D K
Sbjct: 9 GGMQELATLNGPDCLADSNVRVRQRSGIHR-DMSQRQVICPEPRRLPIVPSLADDHEIHK 67

Query: 394 PIRQVRSMSPVAIDGSDAGCEILDIFLSKSPY---XXXXXXXXXXXXXXXXRAANPLVRD 564
R++ S S + +G +A EILDIF SKS Y R+ NPL+ D
Sbjct: 68 SGRRLHSHSAMQTEG-EACREILDIFFSKSGYGDQANVNSSLPYFCGSPPSRSHNPLIHD 126

Query: 565 SQFLHPHAYP 594
+F+ P
Sbjct: 127 VKFIKKELAP 136


>tr|Q38JI3|Q38JI3_SOLTU Putative uncharacterized protein OS=Solanum
tuberosum PE=2 SV=1
Length = 183

Score = 43.1 bits (100), Expect = 0.014
Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 10/108 (9%)
Frame = +1

Query: 304 RSPESSEEKIICPKPQRVAVANLRSVDFIKPIRQVRSMSPVAIDGS----DAGCEILDIF 471
R+ S ++CPKP+++ + SV+ +PIR + M + + AG E+LDI
Sbjct: 22 RADISVSNGVVCPKPRKLGFFDSDSVNVEEPIRPYQLMQFINEEMEACELKAGAELLDII 81

Query: 472 LSKSPY------XXXXXXXXXXXXXXXXRAANPLVRDSQFLHPHAYPV 597
L+K Y RA NPL++D+QF + + P+
Sbjct: 82 LTKGSYEVDRANFEVDSSPPFFYGSPPSRAGNPLIQDAQFGNHNFVPI 129


>tr|B8LMK2|B8LMK2_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 167

Score = 43.1 bits (100), Expect = 0.014
Identities = 38/128 (29%), Positives = 59/128 (46%), Gaps = 9/128 (7%)
Frame = +1

Query: 238 MSHLATLS----LTDPRSEMRDCGSLRSPESSEEKIICPKPQRVAVANLRSVD--FIKPI 399
M LATL+ L D +R + + S+ ++ICP+P+R+ + + D K
Sbjct: 1 MQELATLNGPDCLADSNVRVRQRSGIHR-DMSQRQVICPEPRRLPIVPSLADDHEIHKSG 59

Query: 400 RQVRSMSPVAIDGSDAGCEILDIFLSKSPY---XXXXXXXXXXXXXXXXRAANPLVRDSQ 570
R++ S S + +G +A EILDIF SKS Y R+ NPL+ D +
Sbjct: 60 RRLHSHSAMQTEG-EACREILDIFFSKSGYGDQANVNSSLPYFCGSPPSRSHNPLIHDVK 118

Query: 571 FLHPHAYP 594
F+ P
Sbjct: 119 FIKKELAP 126