DK957741 |
Clone id |
TST39A01NGRL0029_C16 |
Library |
TST39 |
Length |
659 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_C16. 5' end sequence. |
Accession |
DK957741 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL3294Contig1 |
Sequence |
TGAATTTTAAGTGCGGAACTTACTGGGGGCCTTCGTGCCGATGGCAAGGCTTGGGTGATC TAGCAGAGCTCGAAAAGAGCTATGTTTCGGTTGCGAAGGTTTGCAGGACTACAAGAGAGA GTATCATGTATCAAACAGATTCTGGGGAAGGAGGTGCCTTTTGATCTGCATTATGGAAGA AGCTTTTCGGAAGCTTTGGCTGTCTTGGAACCTGATGTTGAGCCCAATTTAAACCTTCCC GCGCCTGATCCTGAGCTTGCAGAGGTCATAGTGGCCGTGCCCAGAGCAGGAGGGGGGAAA ATCATATCAAAGAAAGAGAGGAAAGCAGGCCGTGTCCCCGGGATCGTCCATAGCTTGGAG GATGGTCAGAATGGTGGGCACAAACAGCTCATTTCTGTGGAAACCAAGCAGCTTTCCAGG CTTCTCAAGCGAATAGGTTACAGCTTCTTCCACTCTCGGACATTTGAGCTCGAGGTGCGT GAGGAGATGAACTCTGATGTTATCATCTCTAGAGAAAGGGTTTTACCTCGCTGGGTTCAT TTGCATGCAGGTACAGATGCCATTCTAAATGCCACTTTTATCAGGGCTCCACCTGAAGCA AAGATCCGAGTCAATGTTCCTCTTGTTTTCCGTGGAAGAGATGCCTGCCCAGGCATAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q1H3J2 |
Definition |
sp|Q1H3J2|RL25_METFK 50S ribosomal protein L25 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) |
Align length |
134 |
Score (bit) |
58.5 |
E-value |
3.0e-08 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q9SUR4 |
Definition |
tr|Q9SUR4|Q9SUR4_ARATH Putative uncharacterized protein F9D16.90 (Putative uncharacterized protein At4g23620) (Putative uncharacterized protein) OS=Arabidopsis thaliana |
Align length |
140 |
Score (bit) |
174.0 |
E-value |
4.0e-42 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957741|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0029_C16, 5' (659 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q9SUR4|Q9SUR4_ARATH Putative uncharacterized protein F9D16.90... 174 4e-42 tr|B2WS92|B2WS92_9BRAS 50S ribosomal protein OS=Capsella rubella... 174 4e-42 tr|A7QNG3|A7QNG3_VITVI Chromosome chr2 scaffold_132, whole genom... 173 1e-41 tr|A9T7H9|A9T7H9_PHYPA Predicted protein (Fragment) OS=Physcomit... 169 2e-40 tr|A5A5A1|A5A5A1_NICBE Ribosomal protein L25 OS=Nicotiana bentha... 161 3e-38 tr|Q5W6B7|Q5W6B7_ORYSJ Os05g0270000 protein OS=Oryza sativa subs... 148 3e-34 tr|A2Y2K9|A2Y2K9_ORYSI Putative uncharacterized protein OS=Oryza... 148 3e-34 tr|Q2HVB5|Q2HVB5_MEDTR Putative uncharacterized protein OS=Medic... 148 3e-34 tr|Q5ZC40|Q5ZC40_ORYSJ Putative uncharacterized protein P0451D05... 147 4e-34 tr|Q0JLK3|Q0JLK3_ORYSJ Os01g0593500 protein (Putative uncharacte... 147 4e-34 tr|A2WS29|A2WS29_ORYSI Putative uncharacterized protein OS=Oryza... 147 4e-34 tr|B4FYM2|B4FYM2_MAIZE Putative uncharacterized protein OS=Zea m... 145 2e-33 tr|A9P0B6|A9P0B6_PICSI Putative uncharacterized protein OS=Picea... 125 2e-27 tr|Q9FKZ4|Q9FKZ4_ARATH Arabidopsis thaliana genomic DNA, chromos... 96 3e-18 tr|A7PV38|A7PV38_VITVI Chromosome chr4 scaffold_32, whole genome... 92 3e-17 tr|A7QYE6|A7QYE6_VITVI Chromosome undetermined scaffold_245, who... 89 3e-16 tr|Q10GV3|Q10GV3_ORYSJ Ribosomal 5S rRNA E-loop binding protein ... 81 5e-14 tr|Q10GV2|Q10GV2_ORYSJ Ribosomal 5S rRNA E-loop binding protein ... 81 5e-14 tr|Q0DQB7|Q0DQB7_ORYSJ Os03g0612600 protein (Fragment) OS=Oryza ... 81 5e-14 tr|B8AMM7|B8AMM7_ORYSI Putative uncharacterized protein OS=Oryza... 81 5e-14 tr|B6TN36|B6TN36_MAIZE 5S rRNA binding protein OS=Zea mays PE=2 ... 80 1e-13 tr|Q00YQ0|Q00YQ0_OSTTA Putative uncharacterized protein (Fragmen... 67 1e-09 tr|Q1N8I4|Q1N8I4_9SPHN Ribosomal 5S rRNA E-loop binding protein ... 63 1e-08 tr|B8EK41|B8EK41_METSI Ribosomal 5S rRNA E-loop binding protein ... 61 5e-08 tr|A4S4Y1|A4S4Y1_OSTLU Predicted protein OS=Ostreococcus lucimar... 61 7e-08 tr|B2IG64|B2IG64_BEII9 Ribosomal 5S rRNA E-loop binding protein ... 58 5e-07 tr|B3Q7X4|B3Q7X4_RHOPT Ribosomal 5S rRNA E-loop binding protein ... 56 2e-06 tr|A3WCE8|A3WCE8_9SPHN Ribosomal protein L25 OS=Erythrobacter sp... 55 3e-06 tr|B2UER5|B2UER5_RALPJ Ribosomal 5S rRNA E-loop binding protein ... 52 4e-05 tr|A7CEV4|A7CEV4_BURPI Ribosomal 5S rRNA E-loop binding protein ... 52 4e-05
>tr|Q9SUR4|Q9SUR4_ARATH Putative uncharacterized protein F9D16.90 (Putative uncharacterized protein At4g23620) (Putative uncharacterized protein) OS=Arabidopsis thaliana GN=AT4g23620 PE=2 SV=1 Length = 264
Score = 174 bits (441), Expect = 4e-42 Identities = 84/140 (60%), Positives = 108/140 (77%) Frame = +1
Query: 238 PAPDPELAEVIVAVPRAGGGKIISKKERKAGRVPGIVHSLEDGQNGGHKQLISVETKQLS 417 P PDP+ AE I+AVPR+ GK IS KERKAGRVP I+ EDGQ+GG+K+LISV+T Q+ Sbjct: 44 PRPDPKHAETILAVPRSVSGKSISAKERKAGRVPSIIFEQEDGQHGGNKRLISVQTNQIR 103
Query: 418 RLLKRIGYSFFHSRTFELEVREEMNSDVIISRERVLPRWVHLHAGTDAILNATFIRAPPE 597 +L+ +GYSFF SR F++EVR E+ SD +I + R LPR +HLH+GTDA LN TFIRAPP Sbjct: 104 KLVNHLGYSFFLSRLFDVEVRAEIGSDEVIEKVRALPRAIHLHSGTDAPLNVTFIRAPPG 163
Query: 598 AKIRVNVPLVFRGRDACPGI 657 A ++V++PLVF G D PG+ Sbjct: 164 ALLKVDIPLVFIGDDVSPGL 183
>tr|B2WS92|B2WS92_9BRAS 50S ribosomal protein OS=Capsella rubella GN=6J23.13 PE=4 SV=1 Length = 257
Score = 174 bits (441), Expect = 4e-42 Identities = 83/140 (59%), Positives = 108/140 (77%) Frame = +1
Query: 238 PAPDPELAEVIVAVPRAGGGKIISKKERKAGRVPGIVHSLEDGQNGGHKQLISVETKQLS 417 P PDP+ AE I+AVPR+ GK IS KERKAGRVP I+ EDGQ+GG+K+L+SV+T Q+ Sbjct: 44 PRPDPKYAETILAVPRSVSGKSISAKERKAGRVPSIIFEQEDGQHGGNKRLVSVQTNQIR 103
Query: 418 RLLKRIGYSFFHSRTFELEVREEMNSDVIISRERVLPRWVHLHAGTDAILNATFIRAPPE 597 +L+ +GYSFF SR F++EVR E+ SD +I + R LPR +HLH+GTDA LN TFIRAPP Sbjct: 104 KLVTHLGYSFFLSRLFDVEVRAEIGSDEVIEKVRALPRAIHLHSGTDAPLNVTFIRAPPG 163
Query: 598 AKIRVNVPLVFRGRDACPGI 657 A ++V++PLVF G D PG+ Sbjct: 164 ALLKVDIPLVFIGDDVSPGL 183
>tr|A7QNG3|A7QNG3_VITVI Chromosome chr2 scaffold_132, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002517001 PE=4 SV=1 Length = 258
Score = 173 bits (438), Expect = 1e-41 Identities = 91/164 (55%), Positives = 114/164 (69%), Gaps = 5/164 (3%) Frame = +1
Query: 181 SFSEALAVLEPDVEPNL-----NLPAPDPELAEVIVAVPRAGGGKIISKKERKAGRVPGI 345 S S A AVL+ +EP P PDP+ AE+I A+PR GK IS KERK GRVP I Sbjct: 20 SQSAAAAVLQDPLEPPPLTYLEGFPRPDPKFAEIIRAIPRTISGKNISAKERKVGRVPSI 79
Query: 346 VHSLEDGQNGGHKQLISVETKQLSRLLKRIGYSFFHSRTFELEVREEMNSDVIISRERVL 525 V EDGQ+GG+K+LISV+T Q+ +L+ +G SFF SR F+LEV S+ +I + RVL Sbjct: 80 VFEQEDGQHGGNKRLISVKTNQIRKLVNHLGRSFFLSRLFDLEVGPHFESNEVIEKVRVL 139
Query: 526 PRWVHLHAGTDAILNATFIRAPPEAKIRVNVPLVFRGRDACPGI 657 PR +HLHAGTDA+LN TFIRAP A ++V+VPLVFRG D PG+ Sbjct: 140 PRKLHLHAGTDAVLNVTFIRAPSHALLKVDVPLVFRGEDVSPGL 183
>tr|A9T7H9|A9T7H9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_47148 PE=4 SV=1 Length = 206
Score = 169 bits (427), Expect = 2e-40 Identities = 83/140 (59%), Positives = 107/140 (76%) Frame = +1
Query: 238 PAPDPELAEVIVAVPRAGGGKIISKKERKAGRVPGIVHSLEDGQNGGHKQLISVETKQLS 417 P + + EVI+ PR G GKI+SKKER+ GRVP IV S E+G GG+KQLISVETKQ+ Sbjct: 1 PKEEEKAEEVILGFPRHGSGKIVSKKERRVGRVPSIVFSQENGHIGGNKQLISVETKQIE 60
Query: 418 RLLKRIGYSFFHSRTFELEVREEMNSDVIISRERVLPRWVHLHAGTDAILNATFIRAPPE 597 RL+KR+G S F S TF+LEV ++ + + ++ERVLPR +HLHAGTD ++N TFIRAPP Sbjct: 61 RLIKRLGKSSFLSSTFDLEVYDDQGN--VQAKERVLPRSIHLHAGTDKVMNVTFIRAPPT 118
Query: 598 AKIRVNVPLVFRGRDACPGI 657 A ++V+VPL+F G DACPGI Sbjct: 119 ASLKVDVPLIFIGEDACPGI 138
>tr|A5A5A1|A5A5A1_NICBE Ribosomal protein L25 OS=Nicotiana benthamiana PE=2 SV=1 Length = 251
Score = 161 bits (408), Expect = 3e-38 Identities = 87/165 (52%), Positives = 112/165 (67%), Gaps = 2/165 (1%) Frame = +1
Query: 169 HYGRSF--SEALAVLEPDVEPNLNLPAPDPELAEVIVAVPRAGGGKIISKKERKAGRVPG 342 HY F + A AV+ P EP P PDP+ E I A+ RA GK I+ KERKAGRVP Sbjct: 14 HYHLRFFSNSAAAVVLPYPEPEF--PKPDPKYDETIHAIARAKSGKNIAAKERKAGRVPS 71
Query: 343 IVHSLEDGQNGGHKQLISVETKQLSRLLKRIGYSFFHSRTFELEVREEMNSDVIISRERV 522 IV EDGQ+GG+K+LISV+ Q+ +L+ +G S F SR F+LEVR + +S ++ + RV Sbjct: 72 IVFEQEDGQHGGNKRLISVQANQIRKLVNHLGRSHFLSRLFDLEVRPDFDSVEVVEKVRV 131
Query: 523 LPRWVHLHAGTDAILNATFIRAPPEAKIRVNVPLVFRGRDACPGI 657 LPR VHL AG+DA LN TFIRAP A ++V+VPL+FRG D PG+ Sbjct: 132 LPRKVHLEAGSDAPLNVTFIRAPSSALLKVDVPLIFRGEDVSPGL 176
>tr|Q5W6B7|Q5W6B7_ORYSJ Os05g0270000 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0037H03.14 PE=2 SV=1 Length = 265
Score = 148 bits (374), Expect = 3e-34 Identities = 76/141 (53%), Positives = 101/141 (71%), Gaps = 1/141 (0%) Frame = +1
Query: 238 PAPDPELAEVIVAVPRAGGGKIISKKERKAGRVPGIVHSLEDGQNGGHKQLISVETKQLS 417 P PD + E+I+AVPRA G+ ++ KERKAGRVP IV E+GQ GG+K+L+SV++KQ+ Sbjct: 50 PRPDAKHDELILAVPRASPGRHVAAKERKAGRVPAIVFEQENGQEGGNKRLVSVQSKQIR 109
Query: 418 RLLKRIGYSFFHSRTFELEV-REEMNSDVIISRERVLPRWVHLHAGTDAILNATFIRAPP 594 +L+ +G SFF SR F L+V E V+I RVLPR VHLHAGTD LN TF+RAP Sbjct: 110 KLVDHLGRSFFLSRLFRLQVWSEHAGQGVLIESVRVLPRKVHLHAGTDEPLNVTFMRAPS 169
Query: 595 EAKIRVNVPLVFRGRDACPGI 657 A ++++VPL+F G DA PG+ Sbjct: 170 SALLKIDVPLMFIGDDASPGL 190
>tr|A2Y2K9|A2Y2K9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19240 PE=4 SV=1 Length = 265
Score = 148 bits (374), Expect = 3e-34 Identities = 76/141 (53%), Positives = 101/141 (71%), Gaps = 1/141 (0%) Frame = +1
Query: 238 PAPDPELAEVIVAVPRAGGGKIISKKERKAGRVPGIVHSLEDGQNGGHKQLISVETKQLS 417 P PD + E+I+AVPRA G+ ++ KERKAGRVP IV E+GQ GG+K+L+SV++KQ+ Sbjct: 50 PRPDAKHDELILAVPRASPGRHVAAKERKAGRVPAIVFEQENGQEGGNKRLVSVQSKQIR 109
Query: 418 RLLKRIGYSFFHSRTFELEV-REEMNSDVIISRERVLPRWVHLHAGTDAILNATFIRAPP 594 +L+ +G SFF SR F L+V E V+I RVLPR VHLHAGTD LN TF+RAP Sbjct: 110 KLVDHLGRSFFLSRLFRLQVWSEHAGQGVLIESVRVLPRKVHLHAGTDEPLNVTFMRAPS 169
Query: 595 EAKIRVNVPLVFRGRDACPGI 657 A ++++VPL+F G DA PG+ Sbjct: 170 SALLKIDVPLMFIGDDASPGL 190
>tr|Q2HVB5|Q2HVB5_MEDTR Putative uncharacterized protein OS=Medicago truncatula GN=MtrDRAFT_AC148965g15v2 PE=2 SV=1 Length = 266
Score = 148 bits (373), Expect = 3e-34 Identities = 84/174 (48%), Positives = 110/174 (63%), Gaps = 11/174 (6%) Frame = +1
Query: 169 HYGRSFSEALAVLEPD--VEPNLNL---PAPDPELAEVIVAVPRAGGGKIISKKERKAGR 333 H+ + + EPD ++P L P P+P+ E I+A+PR GK IS KERK GR Sbjct: 16 HFSAIATALIHTPEPDHILQPLTYLDGFPKPNPKYDETILAIPRKDSGKNISAKERKVGR 75
Query: 334 VPGIVHSLEDGQNGGHKQLISVETKQLSRLLKRIGYSFFHSRTFELEVREEMNSDV---- 501 VP IV EDG GG+K+LISV + Q+ +L+ +G SFF SR F L+V + +SD Sbjct: 76 VPSIVFEQEDGHLGGNKRLISVRSDQIRKLVNHLGRSFFLSRLFHLQVLHQFDSDSNPND 135
Query: 502 --IISRERVLPRWVHLHAGTDAILNATFIRAPPEAKIRVNVPLVFRGRDACPGI 657 II RVLPR +HL AGTDA LN TFIRAP +A ++V+VP+VFRG D PG+ Sbjct: 136 EDIIENVRVLPRSIHLKAGTDAPLNVTFIRAPSDAWLKVDVPIVFRGDDISPGL 189
>tr|Q5ZC40|Q5ZC40_ORYSJ Putative uncharacterized protein P0451D05.4 OS=Oryza sativa subsp. japonica GN=P0451D05.4 PE=4 SV=1 Length = 381
Score = 147 bits (372), Expect = 4e-34 Identities = 75/141 (53%), Positives = 100/141 (70%), Gaps = 1/141 (0%) Frame = +1
Query: 238 PAPDPELAEVIVAVPRAGGGKIISKKERKAGRVPGIVHSLEDGQNGGHKQLISVETKQLS 417 P PD + E+I+AVPRA G+ ++ KERKAGRVP IV E+GQ GG+K+L+SV++KQ+ Sbjct: 56 PRPDAKHDELILAVPRASSGRHVAAKERKAGRVPAIVFEQENGQEGGNKRLVSVQSKQIR 115
Query: 418 RLLKRIGYSFFHSRTFELEV-REEMNSDVIISRERVLPRWVHLHAGTDAILNATFIRAPP 594 +L+ +G SFF SR F L+V E +I RVLPR VHLHAGTD LN TF+RAP Sbjct: 116 KLVDHLGRSFFLSRLFRLQVWSEHAGQGELIESVRVLPRKVHLHAGTDEPLNVTFMRAPS 175
Query: 595 EAKIRVNVPLVFRGRDACPGI 657 A ++++VPL+F G DA PG+ Sbjct: 176 SALLKIDVPLMFIGEDASPGL 196
>tr|Q0JLK3|Q0JLK3_ORYSJ Os01g0593500 protein (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica GN=Os01g0593500 PE=4 SV=1 Length = 271
Score = 147 bits (372), Expect = 4e-34 Identities = 75/141 (53%), Positives = 100/141 (70%), Gaps = 1/141 (0%) Frame = +1
Query: 238 PAPDPELAEVIVAVPRAGGGKIISKKERKAGRVPGIVHSLEDGQNGGHKQLISVETKQLS 417 P PD + E+I+AVPRA G+ ++ KERKAGRVP IV E+GQ GG+K+L+SV++KQ+ Sbjct: 56 PRPDAKHDELILAVPRASSGRHVAAKERKAGRVPAIVFEQENGQEGGNKRLVSVQSKQIR 115
Query: 418 RLLKRIGYSFFHSRTFELEV-REEMNSDVIISRERVLPRWVHLHAGTDAILNATFIRAPP 594 +L+ +G SFF SR F L+V E +I RVLPR VHLHAGTD LN TF+RAP Sbjct: 116 KLVDHLGRSFFLSRLFRLQVWSEHAGQGELIESVRVLPRKVHLHAGTDEPLNVTFMRAPS 175
Query: 595 EAKIRVNVPLVFRGRDACPGI 657 A ++++VPL+F G DA PG+ Sbjct: 176 SALLKIDVPLMFIGEDASPGL 196
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