DK957474 |
Clone id |
TST39A01NGRL0028_H12 |
Library |
TST39 |
Length |
611 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_H12. 5' end sequence. |
Accession |
DK957474 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL43Contig1 |
Sequence |
GTACCTTGCCCCTCTACAGAAATTCGGCTTATTGCGGCTTCCATGGCTCTGGCTGAAGTG GTGGCCGCGGCGCCTGACTCGGCTCACCGTGATCCGGTTCGGACTATGGGTGGTGGTTTC AAAGGGGACCTACCTCAGGAACATGTTTCCGACGACAAGAATGGGGATGCTACTCAGTTT AAAAGATTAGATGGAGCAGCTGAAGCGGCCAATGCTGGCTATAGTATACCTGTCTTGGCA AGCTATGATGGAGGTGTGGGATGTGATACAAGACACGTATTCTCTGGCATGCTTGCTGAG AATGGGCAGTCTATGTACTATGCCCCTGGTTATGAGTTTCCACAGCAATCTCCTTATTGC TCACAGCCTCAAGGGGCTTACATGTCAAATATGGGATCTGGAACAACGGGGTACTGTGGA CCGCAGTATGGGCCTTATTATCAGCAGGTGCCACCTGGGCTTATGCAGTATTACCCTGCA GAGCAAGAAGTGACGAAGGCTGGAGCCAAGAAGCTGAATGTAAAGGATTGTACCCAAAAT GCTAAGGCCAAACCTGGAGTGCCAGGAAAGCCAGGCTATCAGGCTGGACACAAAAGCATA CTGCCTGATGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9W4E2 |
Definition |
sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster |
Align length |
114 |
Score (bit) |
33.9 |
E-value |
0.67 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957474|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0028_H12, 5' (611 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=... 34 0.67 sp|Q54KT2|Y8896_DICDI Putative uncharacterized protein DDB_G0287... 32 2.0 sp|Q28640|HRG_RABIT Histidine-rich glycoprotein (Fragment) OS=Or... 30 7.5 sp|P40411|FEUC_BACSU Iron-uptake system permease protein feuC OS... 30 7.5 sp|P21409|FBPB_SERMA Fe(3+)-transport system permease protein sf... 30 7.5 sp|P18292|THRB_RAT Prothrombin OS=Rattus norvegicus GN=F2 PE=1 SV=1 30 9.7 sp|Q8RFK2|MUTS_FUSNN DNA mismatch repair protein mutS OS=Fusobac... 30 9.7 sp|Q26614|FGFR_STRPU Fibroblast growth factor receptor OS=Strong... 30 9.7 sp|Q8IXW0|CK035_HUMAN Uncharacterized protein C11orf35 OS=Homo s... 30 9.7
>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=2 Length = 3584
Score = 33.9 bits (76), Expect = 0.67 Identities = 34/114 (29%), Positives = 44/114 (38%), Gaps = 1/114 (0%) Frame = -2
Query: 424 AVHSTPLFQIPYLTCKPLEAVSNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHH 245 A HST T +P + S +A ++ Q H H QQ Q+ + PH H Sbjct: 2071 ATHSTSSSASSTATSQPASSSSLSSLASQSQQQSHR--QLHKQQQQQQQQQQQQQPHYH- 2127
Query: 244 SLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEP-DHG 86 P Q +Y LI + HP KH E G +HP S P HG Sbjct: 2128 --PHQPHYG---------LINGHQQHP-QLNGKHYAENGSTAGYHPHSHPHPHG 2169
>sp|Q54KT2|Y8896_DICDI Putative uncharacterized protein DDB_G0287191 OS=Dictyostelium discoideum GN=DDB_G0287191 PE=4 SV=1 Length = 72
Score = 32.3 bits (72), Expect = 2.0 Identities = 22/81 (27%), Positives = 28/81 (34%) Frame = -2
Query: 277 RVLYHIPHLHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SE 98 R+ YH + HHS P ++ + H HS H +HH Sbjct: 4 RLNYHHHNYHHSYPHHHHHHNY--------------HYHSYPHHH--------HHHSHHH 41
Query: 97 PDHGEPSQAPRPPLQPEPWKP 35 H PS P PP P P P Sbjct: 42 HHHHLPSSPPSPPSPPSPPSP 62
>sp|Q28640|HRG_RABIT Histidine-rich glycoprotein (Fragment) OS=Oryctolagus cuniculus GN=HRG PE=1 SV=1 Length = 526
Score = 30.4 bits (67), Expect = 7.5 Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 4/46 (8%) Frame = -2
Query: 169 HPHSCRRKHVPEVGPL*NHHP*SEPDHGEPSQAP----RPPLQPEP 44 HPH P GP H P P HG P P PP P P Sbjct: 344 HPHGPPPHGHPPHGPPPRHPPHGPPPHGHPPHGPPPHGHPPHGPPP 389
Score = 30.0 bits (66), Expect = 9.7 Identities = 15/37 (40%), Positives = 15/37 (40%), Gaps = 3/37 (8%) Frame = -2
Query: 145 HVPEVGPL*NHHP*SEPDHGEPSQAP---RPPLQPEP 44 H P P HHP P HG P P PP P P Sbjct: 333 HHPHGPPPHGHHPHGPPPHGHPPHGPPPRHPPHGPPP 369
Score = 30.0 bits (66), Expect = 9.7 Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 4/45 (8%) Frame = -2
Query: 166 PHSCRRKHVPEVGPL*NHHP*SEPDHGEPSQAP----RPPLQPEP 44 PH +H P P H P P HG P P PP P P Sbjct: 355 PHGPPPRHPPHGPPPHGHPPHGPPPHGHPPHGPPPHGHPPHGPPP 399
>sp|P40411|FEUC_BACSU Iron-uptake system permease protein feuC OS=Bacillus subtilis GN=feuC PE=1 SV=2 Length = 394
Score = 30.4 bits (67), Expect = 7.5 Identities = 9/27 (33%), Positives = 15/27 (55%) Frame = +3
Query: 396 IWNNGVLWTAVWALLSAGATWAYAVLP 476 +W NG +W+A W ++A W +P Sbjct: 182 VWKNGSIWSANWTYITAVLPWMLLFIP 208
>sp|P21409|FBPB_SERMA Fe(3+)-transport system permease protein sfuB OS=Serratia marcescens GN=fbpB PE=3 SV=2 Length = 527
Score = 30.4 bits (67), Expect = 7.5 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Frame = +3
Query: 342 TAISL---LLTASRGLHVK-YGIWNNGVLWTAVWALLSAGATWAYAVLPC 479 TA++L +T +R L + + +W N LW A+W LS A A + C Sbjct: 295 TALALGVPFITLARWLWLGGFEVWRNAELWPALWQTLSLSAAGALLITLC 344
>sp|P18292|THRB_RAT Prothrombin OS=Rattus norvegicus GN=F2 PE=1 SV=1 Length = 617
Score = 30.0 bits (66), Expect = 9.7 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = +2
Query: 314 CTMPLVMSFHSNLLIAHSLKGLTCQIW 394 C M L +++H N+ + H+ G+ CQ+W Sbjct: 109 CAMDLGLNYHGNVSVTHT--GIECQLW 133
>sp|Q8RFK2|MUTS_FUSNN DNA mismatch repair protein mutS OS=Fusobacterium nucleatum subsp. nucleatum GN=mutS PE=3 SV=1 Length = 896
Score = 30.0 bits (66), Expect = 9.7 Identities = 15/53 (28%), Positives = 28/53 (52%) Frame = -3
Query: 357 IRRLLWKLITRGIVHRLPILSKHAREYVSCITSHTSIIACQDRYTIASIGRFS 199 ++R + ++IT G + + L K+ Y++CI +T+ YT + G FS Sbjct: 119 VKREVTRVITPGTIIDVDFLDKNNNNYIACIKINTTENIVAIAYTDITTGEFS 171
>sp|Q26614|FGFR_STRPU Fibroblast growth factor receptor OS=Strongylocentrotus purpuratus GN=FGFR PE=2 SV=1 Length = 972
Score = 30.0 bits (66), Expect = 9.7 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 4/90 (4%) Frame = +1
Query: 121 KGDLPQEHVSDDKNGDA---TQFKRLDGAAEAANAGYSIPVLASYDGGVGCDTRHVFSGM 291 K D PQ+ + +A T K L G + GY + + G GC+ + + G Sbjct: 54 KPDAPQDLTAIPVKAEAIVLTWKKPLKGQTD----GYIVVYCLKRNKGNGCERQKIEGGN 109
Query: 292 LAENGQSMYYAPG-YEFPQQSPYCSQPQGA 378 + E + YA Y+F QS Y P+GA Sbjct: 110 VTEVEVTNLYANHTYQFQVQSWYSDHPKGA 139
>sp|Q8IXW0|CK035_HUMAN Uncharacterized protein C11orf35 OS=Homo sapiens GN=C11orf35 PE=2 SV=1 Length = 634
Score = 30.0 bits (66), Expect = 9.7 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = -2
Query: 97 PDHGEPSQAPRPPLQPEPWKPQ 32 P HGEP +P+P P+ W P+ Sbjct: 333 PRHGEPVLSPQPCTDPDHWSPE 354
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B4N2C7 |
Definition |
tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni |
Align length |
113 |
Score (bit) |
39.3 |
E-value |
0.18 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957474|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0028_H12, 5' (611 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni GN=GK161... 39 0.18 tr|B2AUB8|B2AUB8_PODAN Predicted CDS Pa_1_18600 OS=Podospora ans... 38 0.40 tr|B4KYB6|B4KYB6_DROMO GI12500 OS=Drosophila mojavensis GN=GI125... 36 2.0 tr|B4N5E4|B4N5E4_DROWI GK20557 OS=Drosophila willistoni GN=GK205... 35 2.6 tr|A1CP48|A1CP48_ASPCL Putative uncharacterized protein OS=Asper... 35 2.6 tr|A9GRK7|A9GRK7_SORC5 Putative uncharacterized protein OS=Soran... 35 4.5 tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein OS=Plesi... 35 4.5 tr|B7FSP6|B7FSP6_PHATR Predicted protein OS=Phaeodactylum tricor... 35 4.5 tr|B6LB31|B6LB31_BRAFL Putative uncharacterized protein OS=Branc... 34 5.8 tr|B3EQ74|B3EQ74_CHLPB PGAP1 family protein OS=Chlorobium phaeob... 34 7.6 tr|B7S0S4|B7S0S4_9GAMM Putative exonuclease, RdgC superfamily OS... 34 7.6 tr|A6N3K6|A6N3K6_9PLAN Polysulfide reductase subunit C (Fragment... 34 7.6 tr|Q0KHV9|Q0KHV9_DROME Rugose, isoform C OS=Drosophila melanogas... 34 7.6 tr|B7Z0X3|B7Z0X3_DROME Rugose, isoform D OS=Drosophila melanogas... 34 7.6 tr|B7Z0W8|B7Z0W8_DROME Rugose, isoform F OS=Drosophila melanogas... 34 7.6 tr|Q4SLL5|Q4SLL5_TETNG Chromosome 15 SCAF14556, whole genome sho... 33 10.0 tr|A7S4H3|A7S4H3_NEMVE Predicted protein OS=Nematostella vectens... 33 10.0
>tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni GN=GK16142 PE=4 SV=1 Length = 809
Score = 39.3 bits (90), Expect = 0.18 Identities = 30/113 (26%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Frame = -2
Query: 361 SNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHHS-----LPRQVYYSQHWPLQL 197 +N + V+ H Q H+T H A +H+ H HH+ P ++ H + Sbjct: 170 TNSAVNVKPHTQFHNTLAHHMTVAHHAAAAAHHV-HAHHAPHPHPHPHHSHHHHHHHAAM 228
Query: 196 LHLIF*T--E*HPHSCRRKHVPEVGPL*NHHP*SEPDHGEPSQAPRPPLQPEP 44 H + HPH+ HVP VG + + P P P P L P+P Sbjct: 229 AHHLLANGFHPHPHALALAHVPVVGGQQSTAAVAPP---APPTLPPPTLMPQP 278
>tr|B2AUB8|B2AUB8_PODAN Predicted CDS Pa_1_18600 OS=Podospora anserina PE=4 SV=1 Length = 597
Score = 38.1 bits (87), Expect = 0.40 Identities = 25/77 (32%), Positives = 36/77 (46%) Frame = -2
Query: 262 IPHLHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHGE 83 +PHLH S P + H L HL + PH+ R H + +HHP +P HG+ Sbjct: 54 LPHLHPSYP----HYHHGVNSLYHLSRQNQ-GPHAPRPSHSRNLSLQPHHHP-QQPSHGQ 107
Query: 82 PSQAPRPPLQPEPWKPQ 32 Q + P QP+ + Q Sbjct: 108 LQQQQQQPQQPQQQQQQ 124
>tr|B4KYB6|B4KYB6_DROMO GI12500 OS=Drosophila mojavensis GN=GI12500 PE=4 SV=1 Length = 788
Score = 35.8 bits (81), Expect = 2.0 Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 14/120 (11%) Frame = -2
Query: 505 LQPSSLLALQGNTA*AQVAPADNKAHT------------AVHSTPL--FQIPYLTCKPLE 368 + P + L L G+ A DN A T A+ T L F P L+ P+E Sbjct: 251 IDPENALMLSGS---AVANGGDNAAATQQQQLLPQVKMEAIDETLLETFSTPMLS--PME 305
Query: 367 AVSNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHHSLPRQVYYSQHWPLQLLHL 188 + K+ + H H QQ Q + YH H Q +Y QH+ Q HL Sbjct: 306 IKTEKQQRQQQQQHQHQQQQQHQQQQQQHQQQQYHQQQQHQQQQHQQHYQQHYQQQQQHL 365
>tr|B4N5E4|B4N5E4_DROWI GK20557 OS=Drosophila willistoni GN=GK20557 PE=4 SV=1 Length = 880
Score = 35.4 bits (80), Expect = 2.6 Identities = 23/73 (31%), Positives = 27/73 (36%), Gaps = 1/73 (1%) Frame = -2
Query: 259 PHLHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHV-PEVGPL*NHHP*SEPDHGE 83 PHLH P Y QH P H HPH+ H P P + HP + P H Sbjct: 742 PHLHQGHPHFAYQPQHHPHFYPHQ------HPHAHAHAHAHPHPHPHPHPHPHAHPPHPS 795
Query: 82 PSQAPRPPLQPEP 44 + P Q P Sbjct: 796 HPHQQQHPHQQHP 808
>tr|A1CP48|A1CP48_ASPCL Putative uncharacterized protein OS=Aspergillus clavatus GN=ACLA_021280 PE=4 SV=1 Length = 122
Score = 35.4 bits (80), Expect = 2.6 Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 1/36 (2%) Frame = +1
Query: 304 GQSMYYAPGYEFPQQSPYCSQPQ-GAYMSNMGSGTT 408 GQ MYY P +PQQ PY Q Q G Y G G++ Sbjct: 65 GQPMYYPPPQGYPQQQPYPPQQQPGYYADERGGGSS 100
>tr|A9GRK7|A9GRK7_SORC5 Putative uncharacterized protein OS=Sorangium cellulosum (strain So ce56) GN=sce3477 PE=4 SV=1 Length = 486
Score = 34.7 bits (78), Expect = 4.5 Identities = 26/88 (29%), Positives = 31/88 (35%) Frame = +1
Query: 139 EHVSDDKNGDATQFKRLDGAAEAANAGYSIPVLASYDGGVGCDTRHVFSGMLAENGQSMY 318 EHV D G GA A G +P GGVG F G +G Y Sbjct: 66 EHVVDVPAGGGADVPNSGGADVPAGGGADVP----NGGGVGDRCAGPFPGEEPRDGSGYY 121
Query: 319 YAPGYEFPQQSPYCSQPQGAYMSNMGSG 402 PG +P +S G YM + G Sbjct: 122 LKPGLLYPAES------SGVYMGQLSLG 143
>tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_03463 PE=4 SV=1 Length = 480
Score = 34.7 bits (78), Expect = 4.5 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = -2
Query: 88 GEPSQAPRPPLQPEPWKP 35 G+P+ AP PP +PEPW+P Sbjct: 154 GDPADAPEPPPEPEPWEP 171
>tr|B7FSP6|B7FSP6_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1 GN=PHATRDRAFT_43574 PE=4 SV=1 Length = 499
Score = 34.7 bits (78), Expect = 4.5 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%) Frame = +2
Query: 233 SWQAMMEVWDVIQDTYSLACLLRM-GSLCTMPLVMSFHSNLLIAHSLKGLTCQIWDLEQR 409 SW ++VWD+ + CLL + GS L S+HS+ ++A T ++WD+ Sbjct: 347 SWDHSLKVWDMERQD----CLLTLNGSRVVSCLDTSYHSSGIVATGHPDCTVRLWDVRID 402
Query: 410 GTVDRSMGL 436 T + S+ L Sbjct: 403 ATNESSLAL 411
>tr|B6LB31|B6LB31_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_118753 PE=4 SV=1 Length = 1311
Score = 34.3 bits (77), Expect = 5.8 Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 15/88 (17%) Frame = -2
Query: 268 YHIPHLHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SE--- 98 +H+P HH P+ QH L H PH ++ +GP +H P + Sbjct: 973 HHVPPQHHGPPQHHGPPQHHGLPQHH-------GPHYGPQEQPKHLGPSQHHGPHARVMQ 1025
Query: 97 -PDHG-----------EPSQAPRPPLQP 50 PDHG +P Q P PP P Sbjct: 1026 GPDHGPQQHGHHEWHVDPHQPPHPPFPP 1053
>tr|B3EQ74|B3EQ74_CHLPB PGAP1 family protein OS=Chlorobium phaeobacteroides (strain BS1) GN=Cphamn1_2478 PE=4 SV=1 Length = 465
Score = 33.9 bits (76), Expect = 7.6 Identities = 17/48 (35%), Positives = 26/48 (54%) Frame = +2
Query: 245 MMEVWDVIQDTYSLACLLRMGSLCTMPLVMSFHSNLLIAHSLKGLTCQ 388 ++ +W+ D LAC L + CT P + + S L+AHS+ GL Q Sbjct: 66 LVGLWEACPDISKLACFLH--TCCTNPPLDRYKSLALVAHSMGGLVVQ 111
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