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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957376
Clone id TST39A01NGRL0028_D07
Library
Length 640
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_D07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TAACTTCTTGCTCAAGCAACCCAGAGTTGCTGCTGCTGGTGGATGTTGCCCGTGCTGTTG
AGGCGGAGTCGGAGGAATTAACATCAGTTGCAATGGCTATGGATGGTGATGGTGGTGGTC
TTGATGATGATGATGATGATGATGATGGAGCTTTGACCCACAGGCTGAGACGATCTGTTA
TGAAACGCTTACGGCAGGAGGGCTACAATGCAGCAATTTGCAAGTCTCGCTGGAAGCATG
CAGATGGGTTACCTGCAGGTATCCTTTTGTGCCCTACCTGCCATATGTGTGGAAAATTGA
AATGAATATGCAAGTGTACACTGGTTGTTGCACAGCCTTTACCCCTATACGTCTGTATAT
GGGTGCGTAGAAATGTCCATTGACATATTGTGGCTGGGTTCTGGATTTAAATGTCAGTGG
ATTATCACAAAAGCTCCTAAAATCTTTTACGTTGATCGGTTTGAACAAGGGGGTCCTAAG
CCTATAGGCATTTTAATGCTGACTCTGACATTGCTGTCCTGCCCACAGGGGACTATGAGT
ACATGTGACATTGTGACAGATGGAAAGGGGGCATTGAAGAAGCAAGAGCGCGTTATAGTA
GACATCGATTTCAGGGCCCAGTTTGAGATAGCAAGGGCAT
■■Homology search results ■■ -
sp_hit_id Q02401
Definition sp|Q02401|LPH_RAT Lactase-phlorizin hydrolase OS=Rattus norvegicus
Align length 94
Score (bit) 33.1
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957376|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_D07, 5'
         (640 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02401|LPH_RAT Lactase-phlorizin hydrolase OS=Rattus norvegic...    33   1.3  
sp|A8GB20|RLPB_SERP5 LPS-assembly lipoprotein rlpB OS=Serratia p...    32   2.8  
sp|Q9DDT5|SPT5H_DANRE Transcription elongation factor SPT5 OS=Da...    32   3.7  
sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplastic...    31   6.2  
sp|Q38709|THI4_ALNGL Thiazole biosynthetic enzyme, chloroplastic...    31   6.2  
sp|Q41739|THI42_MAIZE Thiazole biosynthetic enzyme 1-2, chloropl...    31   6.2  
sp|Q41738|THI41_MAIZE Thiazole biosynthetic enzyme 1-1, chloropl...    31   6.2  

>sp|Q02401|LPH_RAT Lactase-phlorizin hydrolase OS=Rattus norvegicus
           GN=Lct PE=2 SV=2
          Length = 1928

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 25/94 (26%), Positives = 41/94 (43%)
 Frame = +1

Query: 337 LYPYTSVYGCVEMSIDILWLGSGFKCQWIITKAPKIFYVDRFEQGGPKPIGILMLTLTLL 516
           L P  ++   V+ S+D L L   ++CQ + T   K+  +   E   PK + + + TL L 
Sbjct: 232 LLPDPALAALVQGSVDFLSLDLSYECQSVATLPQKLSELQNLE---PK-VKVFIYTLKLE 287

Query: 517 SCPQGTMSTCDIVTDGKGALKKQERVIVDIDFRA 618
            CP    S   ++     A+ K +   V  D  A
Sbjct: 288 DCPATGTSPSSLLISLLEAINKDQIQTVGFDVNA 321


>sp|A8GB20|RLPB_SERP5 LPS-assembly lipoprotein rlpB OS=Serratia
           proteamaculans (strain 568) GN=rlpB PE=3 SV=1
          Length = 186

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -2

Query: 459 PINVKDFRSFCDNPLTFKSRTQPQYV 382
           P+NVK FRSF DNPLT  ++   Q +
Sbjct: 117 PLNVKVFRSFFDNPLTALAKDSEQEI 142


>sp|Q9DDT5|SPT5H_DANRE Transcription elongation factor SPT5 OS=Danio
           rerio GN=supt5h PE=1 SV=1
          Length = 1084

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 426 DNPLTFKSRTQPQYVNGHFYAPIYRRIGVKAVQQPV 319
           D PL  KS   P++V G+ Y   Y++  VKA  + V
Sbjct: 206 DTPLQIKSVVAPEHVKGYIYVEAYKQTHVKAAIEGV 241


>sp|O23787|THI4_CITSI Thiazole biosynthetic enzyme, chloroplastic
           OS=Citrus sinensis GN=THI1 PE=2 SV=1
          Length = 356

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 629 ISNWALKSMSTITRSCFFNAPFPSVTMSHVLIVPCGQD 516
           ++NWAL SM+  T+SC      P+V  + V++  CG D
Sbjct: 208 VTNWALVSMNHDTQSCM----DPNVMEAKVVVSSCGHD 241


>sp|Q38709|THI4_ALNGL Thiazole biosynthetic enzyme, chloroplastic
           OS=Alnus glutinosa GN=THI4 PE=2 SV=1
          Length = 352

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 629 ISNWALKSMSTITRSCFFNAPFPSVTMSHVLIVPCGQD 516
           ++NWAL SM+  T+SC      P+V  + V++  CG D
Sbjct: 204 VTNWALVSMNHDTQSCM----DPNVMEAKVVVSSCGHD 237


>sp|Q41739|THI42_MAIZE Thiazole biosynthetic enzyme 1-2,
           chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1
          Length = 354

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 629 ISNWALKSMSTITRSCFFNAPFPSVTMSHVLIVPCGQD 516
           ++NWAL SM+  T+SC      P+V  + V++  CG D
Sbjct: 204 VTNWALVSMNHDTQSCM----DPNVMEAKVVVSSCGHD 237


>sp|Q41738|THI41_MAIZE Thiazole biosynthetic enzyme 1-1,
           chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1
          Length = 354

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -3

Query: 629 ISNWALKSMSTITRSCFFNAPFPSVTMSHVLIVPCGQD 516
           ++NWAL SM+  T+SC      P+V  + V++  CG D
Sbjct: 207 VTNWALVSMNHDTQSCM----DPNVMEAKVVVSSCGHD 240
tr_hit_id A9RV01
Definition tr|A9RV01|A9RV01_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 85
Score (bit) 52.8
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957376|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_D07, 5'
         (640 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RV01|A9RV01_PHYPA Predicted protein (Fragment) OS=Physcomit...    53   2e-05
tr|B8LNR3|B8LNR3_PICSI Putative uncharacterized protein OS=Picea...    51   7e-05
tr|A9S9X9|A9S9X9_PHYPA Predicted protein (Fragment) OS=Physcomit...    49   3e-04
tr|A9TD04|A9TD04_PHYPA Predicted protein (Fragment) OS=Physcomit...    48   4e-04
tr|A9TR24|A9TR24_PHYPA Predicted protein (Fragment) OS=Physcomit...    47   0.001
tr|A9RAW1|A9RAW1_PHYPA Predicted protein (Fragment) OS=Physcomit...    45   0.005
tr|A9SZ03|A9SZ03_PHYPA Predicted protein (Fragment) OS=Physcomit...    45   0.005
tr|Q8LQF7|Q8LQF7_ORYSJ cDNA clone:002-135-B11, full insert seque...    43   0.018
tr|A2WYA2|A2WYA2_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.018
tr|Q9SRT1|Q9SRT1_ARATH F21O3.6 protein (Putative uncharacterized...    42   0.024
tr|Q8LCS0|Q8LCS0_ARATH Putative uncharacterized protein OS=Arabi...    42   0.024
tr|A9TFN6|A9TFN6_PHYPA Predicted protein (Fragment) OS=Physcomit...    42   0.024
tr|A7R410|A7R410_VITVI Chromosome undetermined scaffold_600, who...    42   0.024
tr|A9NV30|A9NV30_PICSI Putative uncharacterized protein OS=Picea...    42   0.031
tr|B2KZH4|B2KZH4_PICAB Putative uncharacterized protein NSF_A72 ...    41   0.054
tr|A9NXI8|A9NXI8_PICSI Putative uncharacterized protein OS=Picea...    41   0.070
tr|Q5JNJ8|Q5JNJ8_ORYSJ Putative uncharacterized protein P0481E12...    40   0.12 
tr|A2WV07|A2WV07_ORYSI Putative uncharacterized protein OS=Oryza...    40   0.12 
tr|A9T1S5|A9T1S5_PHYPA Predicted protein (Fragment) OS=Physcomit...    39   0.27 
tr|Q7Y1H2|Q7Y1H2_ORYSJ Putative uncharacterized protein OSJNBa00...    39   0.35 
tr|Q6F396|Q6F396_ORYSJ Expressed protein (Putative uncharacteriz...    39   0.35 
tr|Q10C31|Q10C31_ORYSJ Os03g0796600 protein OS=Oryza sativa subs...    39   0.35 
tr|B8ALA9|B8ALA9_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.35 
tr|B0BLJ4|B0BLJ4_LOTJA CM0545.570.nc protein OS=Lotus japonicus ...    39   0.35 
tr|Q9SIH9|Q9SIH9_ARATH Expressed protein (Putative uncharacteriz...    39   0.35 
tr|Q3EBK3|Q3EBK3_ARATH Uncharacterized protein At2g38820.2 OS=Ar...    39   0.35 
tr|Q6Z649|Q6Z649_ORYSJ Putative uncharacterized protein P0654B04...    38   0.45 
tr|Q53JP9|Q53JP9_ORYSJ Uncharacterized plant-specific domain TIG...    38   0.45 
tr|Q0DY22|Q0DY22_ORYSJ Os02g0720400 protein OS=Oryza sativa subs...    38   0.45 
tr|B8LLD3|B8LLD3_PICSI Putative uncharacterized protein OS=Picea...    38   0.45 

>tr|A9RV01|A9RV01_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_46637 PE=4 SV=1
          Length = 226

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 35/85 (41%), Positives = 43/85 (50%)
 Frame = +3

Query: 6   SCSSNPELLLLVDVARAVEAESEELTSVAMAMXXXXXXXXXXXXXXXXALTHRLRRSVMK 185
           S ++  E +LL +V +A+ A + ELTS                      +T  LRR VMK
Sbjct: 64  SSTNVTERVLLAEVNKAM-ASARELTS------------------SEDDVTFCLRRQVMK 104

Query: 186 RLRQEGYNAAICKSRWKHADGLPAG 260
            LR  GYNAAICKSRW HA   P G
Sbjct: 105 HLRTVGYNAAICKSRWDHAGSFPGG 129



 Score = 38.9 bits (89), Expect = 0.27
 Identities = 20/40 (50%), Positives = 26/40 (65%)
 Frame = +1

Query: 517 SCPQGTMSTCDIVTDGKGALKKQERVIVDIDFRAQFEIAR 636
           S P G     D+V + +  +   ER+I+DIDFRAQFEIAR
Sbjct: 125 SFPGGDYEYIDVVFESE--IGNSERIIIDIDFRAQFEIAR 162


>tr|B8LNR3|B8LNR3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 486

 Score = 50.8 bits (120), Expect = 7e-05
 Identities = 23/32 (71%), Positives = 24/32 (75%)
 Frame = +3

Query: 165 LRRSVMKRLRQEGYNAAICKSRWKHADGLPAG 260
           LRRSVM  LR  GYNA ICKSRW+H  G PAG
Sbjct: 249 LRRSVMNYLRGLGYNAGICKSRWEHIGGFPAG 280



 Score = 36.2 bits (82), Expect = 1.7
 Identities = 19/38 (50%), Positives = 21/38 (55%)
 Frame = +1

Query: 523 PQGTMSTCDIVTDGKGALKKQERVIVDIDFRAQFEIAR 636
           P G     D++ DG       ER  VDIDFR QFEIAR
Sbjct: 278 PAGNYEYIDVIIDG-------ERFFVDIDFRVQFEIAR 308


>tr|A9S9X9|A9S9X9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_46777 PE=4 SV=1
          Length = 232

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 21/32 (65%), Positives = 22/32 (68%)
 Frame = +3

Query: 165 LRRSVMKRLRQEGYNAAICKSRWKHADGLPAG 260
           + R VMK LR  GYNAAICKSRW HA   P G
Sbjct: 103 VNRQVMKHLRAAGYNAAICKSRWDHAGSFPGG 134



 Score = 42.7 bits (99), Expect = 0.019
 Identities = 22/40 (55%), Positives = 27/40 (67%)
 Frame = +1

Query: 517 SCPQGTMSTCDIVTDGKGALKKQERVIVDIDFRAQFEIAR 636
           S P G     D++ +G    KK ER+I+DIDFRAQFEIAR
Sbjct: 130 SFPGGDYEYIDVLFEGP--TKKSERIIIDIDFRAQFEIAR 167


>tr|A9TD04|A9TD04_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_6078 PE=4 SV=1
          Length = 234

 Score = 48.1 bits (113), Expect = 4e-04
 Identities = 21/31 (67%), Positives = 23/31 (74%)
 Frame = +3

Query: 168 RRSVMKRLRQEGYNAAICKSRWKHADGLPAG 260
           RRSV+K LR  GYNAA+CKSRW HA   P G
Sbjct: 106 RRSVVKYLRSSGYNAALCKSRWDHAGIFPGG 136


>tr|A9TR24|A9TR24_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_4979 PE=4 SV=1
          Length = 229

 Score = 46.6 bits (109), Expect = 0.001
 Identities = 21/33 (63%), Positives = 24/33 (72%)
 Frame = +3

Query: 165 LRRSVMKRLRQEGYNAAICKSRWKHADGLPAGI 263
           LRR VMK LR  GY+AAICKSRW +A   P G+
Sbjct: 99  LRRRVMKYLRNGGYSAAICKSRWDNAGTFPGGV 131



 Score = 40.8 bits (94), Expect = 0.071
 Identities = 20/38 (52%), Positives = 25/38 (65%)
 Frame = +1

Query: 523 PQGTMSTCDIVTDGKGALKKQERVIVDIDFRAQFEIAR 636
           P G     D++ +G  A  K ER+I+DIDFR QFEIAR
Sbjct: 128 PGGVYEYIDVIFEG--ATGKSERIIIDIDFRTQFEIAR 163


>tr|A9RAW1|A9RAW1_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_52420 PE=4 SV=1
          Length = 222

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 18/30 (60%), Positives = 22/30 (73%)
 Frame = +3

Query: 165 LRRSVMKRLRQEGYNAAICKSRWKHADGLP 254
           LR  VMK LR+ GYNA ICKS+W +  G+P
Sbjct: 91  LRHQVMKHLRRAGYNAGICKSKWDYLGGIP 120



 Score = 38.5 bits (88), Expect = 0.35
 Identities = 16/30 (53%), Positives = 23/30 (76%)
 Frame = +1

Query: 547 DIVTDGKGALKKQERVIVDIDFRAQFEIAR 636
           D++ +G    +  ER+I+DIDF+AQFEIAR
Sbjct: 128 DVIYEGPSTGEDGERIIIDIDFKAQFEIAR 157


>tr|A9SZ03|A9SZ03_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_46640 PE=4 SV=1
          Length = 218

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 21/38 (55%), Positives = 26/38 (68%)
 Frame = +1

Query: 523 PQGTMSTCDIVTDGKGALKKQERVIVDIDFRAQFEIAR 636
           P G     D+  +G  A+K  ER+IVDIDF+AQFEIAR
Sbjct: 117 PGGEYEYVDVDFEGSTAVKNSERIIVDIDFKAQFEIAR 154



 Score = 38.9 bits (89), Expect = 0.27
 Identities = 16/28 (57%), Positives = 18/28 (64%)
 Frame = +3

Query: 177 VMKRLRQEGYNAAICKSRWKHADGLPAG 260
           VM+ LRQ GY A ICK RW H+   P G
Sbjct: 92  VMRHLRQAGYKAGICKCRWDHSGEHPGG 119


>tr|Q8LQF7|Q8LQF7_ORYSJ cDNA clone:002-135-B11, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0004D12.15 PE=2 SV=1
          Length = 293

 Score = 42.7 bits (99), Expect = 0.018
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = +3

Query: 168 RRSVMKRLRQEGYNAAICKSRWKHADGLPAG 260
           RR+V +RLR  GY+A +CKSRW+ + G+ AG
Sbjct: 122 RRAVARRLRAAGYDAGVCKSRWEASGGITAG 152


>tr|A2WYA2|A2WYA2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04906 PE=4 SV=1
          Length = 293

 Score = 42.7 bits (99), Expect = 0.018
 Identities = 17/31 (54%), Positives = 24/31 (77%)
 Frame = +3

Query: 168 RRSVMKRLRQEGYNAAICKSRWKHADGLPAG 260
           RR+V +RLR  GY+A +CKSRW+ + G+ AG
Sbjct: 122 RRAVARRLRAAGYDAGVCKSRWEASGGITAG 152


>tr|Q9SRT1|Q9SRT1_ARATH F21O3.6 protein (Putative uncharacterized
           protein At3g07350) OS=Arabidopsis thaliana GN=At3g07350
           PE=2 SV=1
          Length = 298

 Score = 42.4 bits (98), Expect = 0.024
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = +3

Query: 168 RRSVMKRLRQEGYNAAICKSRWKHADGLPAG 260
           +R VM  LR+ G+NAAICK++WK + GL AG
Sbjct: 136 QRKVMSLLRELGHNAAICKTKWKSSGGLTAG 166