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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957356
Clone id TST39A01NGRL0028_C11
Library
Length 630
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_C11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID -
Sequence 
AGAAAGAGAGAGACAGACGTGTTTCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGCTTCTGCAATACAGAGGGATGACTAATGAGAGCCACTCGGACAGGGA
GAGAAAAAGAAAGTAAGTTCTACACTCCACTAGTGAGCAATACAGAGTTAGATCTATGCA
GCTGCTGTAGTTATTCATGCCTGTGGAAGAAATGGATGCTTCGATCGAGTGGTAACAAGA
TCAACTGTACTGTCCAATATTTTCCTTCCAACAAACTGGATTTGAATATGCTTGAACCGA
GCATGGAACACCAGGTTCTGAGCAATAGGGATGCAGCTCTGGTTGTTCTCTTCGTTTGGA
ACCTCCAGTTTTGGGCTCTGTCAAAAATGATACATCGATTTCAATGCCTCTAGTGTTACT
CAGGTCTTGAATGGAAGTGCAGCCCCAGAACATTACTCAGCTCAAGATCAACACATCAGC
AGACGATGATAACAAGATGAGAGAGGAAGAGCTTAGGAGCGCAGCACACAGCATGATTGA
TAGTTTGTCCCATGAGAAGCTTGTGGAGATCGCTGCATCTCTACCACTACTTCAGATCAG
ACCTCGCGGTGACCAGCCTAAACAGCTGAG
■■Homology search results ■■ -
sp_hit_id P04146
Definition sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster
Align length 35
Score (bit) 33.1
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957356|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_C11, 5'
         (630 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    33   1.2  
sp|Q9FNK0|FDL30_ARATH Putative F-box/FBD/LRR-repeat protein At5g...    31   4.6  
sp|Q91VW5|GOGA4_MOUSE Golgin subfamily A member 4 OS=Mus musculu...    30   7.8  
sp|Q5SSZ5|TENS3_MOUSE Tensin-3 OS=Mus musculus GN=Tns3 PE=1 SV=1       30   7.9  

>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster GN=GIP
            PE=1 SV=3
          Length = 1409

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 18/35 (51%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 371  KLEVPNE--ENNQSCIPIAQNLVFHARFKHIQIQF 273
            KLE P +  E+NQ CI IA N   H R KHI I++
Sbjct: 1321 KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKY 1355


>sp|Q9FNK0|FDL30_ARATH Putative F-box/FBD/LRR-repeat protein
           At5g22610 OS=Arabidopsis thaliana GN=At5g22610 PE=4 SV=1
          Length = 502

 Score = 31.2 bits (69), Expect = 4.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 371 KLEVPNEENNQSCIPIAQNLVFHARFKHIQIQFVGR 264
           KL +   EN+ SC+ +  + V   + +H+ ++F GR
Sbjct: 95  KLSIQKNENDPSCVTLWTDCVARGKLQHLDVEFGGR 130


>sp|Q91VW5|GOGA4_MOUSE Golgin subfamily A member 4 OS=Mus musculus
            GN=Golga4 PE=1 SV=2
          Length = 2238

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 455  TQLKINTSADDDNKMREEELRSAAHSMIDSLSHEKLVEIAASL 583
            TQL   T+   D+K++E+ELR   H++ D L   +    AA++
Sbjct: 2120 TQLAQKTTLISDSKLKEQELREQVHNLEDRLKRYEKNACAATV 2162


>sp|Q5SSZ5|TENS3_MOUSE Tensin-3 OS=Mus musculus GN=Tns3 PE=1 SV=1
          Length = 1440

 Score = 30.4 bits (67), Expect = 7.9
 Identities = 18/46 (39%), Positives = 22/46 (47%)
 Frame = -1

Query: 423 LSNTRGIEIDVSFLTEPKTGGSKRREQPELHPYCSEPGVPCSVQAY 286
           LS   G+ +D  +  E   GG   REQ  L P   +P  P  VQAY
Sbjct: 537 LSPDLGLGVDTLYDRERMCGG---REQKPLQPLLRKPSAPTPVQAY 579
tr_hit_id A5BGK7
Definition tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 50
Score (bit) 43.1
E-value 0.014
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957356|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_C11, 5'
         (630 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis...    43   0.014
tr|A5C7V7|A5C7V7_VITVI Putative uncharacterized protein OS=Vitis...    42   0.030
tr|A5BM89|A5BM89_VITVI Putative uncharacterized protein OS=Vitis...    41   0.052
tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis...    40   0.12 
tr|A9S171|A9S171_PHYPA Predicted protein (Fragment) OS=Physcomit...    39   0.20 
tr|A5B1S5|A5B1S5_VITVI Putative uncharacterized protein OS=Vitis...    39   0.20 
tr|Q4W6T6|Q4W6T6_PETHY Polypepetide with reverse transcriptase a...    39   0.26 
tr|A5BJX0|A5BJX0_VITVI Putative uncharacterized protein OS=Vitis...    39   0.26 
tr|A5AH18|A5AH18_VITVI Putative uncharacterized protein OS=Vitis...    39   0.33 
tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE...    38   0.57 
tr|A5BTS3|A5BTS3_VITVI Putative uncharacterized protein OS=Vitis...    38   0.57 
tr|A5C9E1|A5C9E1_VITVI Putative uncharacterized protein OS=Vitis...    37   0.97 
tr|A5B0R0|A5B0R0_VITVI Putative uncharacterized protein OS=Vitis...    37   0.97 
tr|A5AQN3|A5AQN3_VITVI Putative uncharacterized protein OS=Vitis...    37   0.97 
tr|Q948W0|Q948W0_PHYPA Gene, complete cds, clone:M14, similar to...    36   1.7  
tr|A5C1V1|A5C1V1_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5BZR7|A5BZR7_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5BUX6|A5BUX6_VITVI Putative uncharacterized protein (Fragmen...    36   1.7  
tr|A5BS42|A5BS42_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5BR93|A5BR93_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5BN47|A5BN47_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5BLU7|A5BLU7_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5BJ12|A5BJ12_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5BIL8|A5BIL8_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5BAZ3|A5BAZ3_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5B9K4|A5B9K4_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5B8G1|A5B8G1_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5B7A7|A5B7A7_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5B5I8|A5B5I8_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  
tr|A5B554|A5B554_VITVI Putative uncharacterized protein OS=Vitis...    36   1.7  

>tr|A5BGK7|A5BGK7_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_007301 PE=4 SV=1
          Length = 973

 Score = 43.1 bits (100), Expect = 0.014
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
 Frame = -2

Query: 362  VPNEENNQSCIPIAQNLVFHARFKHIQI--QFVGRKILDSTVDLVTTRSK 219
            VP   +NQS + +A+N VFHAR KH+++   F+  K+L+  V+L   +SK
Sbjct: 887  VPLYCDNQSAVRLAENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKSK 936


>tr|A5C7V7|A5C7V7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_041885 PE=4 SV=1
          Length = 408

 Score = 42.0 bits (97), Expect = 0.030
 Identities = 19/50 (38%), Positives = 33/50 (66%), Gaps = 2/50 (4%)
 Frame = -2

Query: 362 VPNEENNQSCIPIAQNLVFHARFKHIQI--QFVGRKILDSTVDLVTTRSK 219
           +P   +NQS + +A+N VFHAR KH+++   F+  K+L+  V+L   +S+
Sbjct: 322 IPLYYDNQSAVRLAENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKSE 371


>tr|A5BM89|A5BM89_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036685 PE=4 SV=1
          Length = 246

 Score = 41.2 bits (95), Expect = 0.052
 Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
 Frame = -2

Query: 347 NNQSCIPIAQNLVFHARFKHIQI--QFVGRKILDSTVDLVTTRSK 219
           +NQS + +A+N VFHAR KH+++   F+  K+L+  V+L   +S+
Sbjct: 165 DNQSAVRLAENPVFHARTKHVEVHYHFIXEKVLEEEVELKQIKSE 209


>tr|A5AKW8|A5AKW8_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_027864 PE=4 SV=1
          Length = 1300

 Score = 40.0 bits (92), Expect = 0.12
 Identities = 20/50 (40%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
 Frame = -2

Query: 362  VPNEENNQSCIPIAQNLVFHARFKHIQI--QFVGRKILDSTVDLVTTRSK 219
            VP   +NQS + +A+N VFHAR KH+++   F+  K+L   V+L   +S+
Sbjct: 1214 VPLYCDNQSAVRLAENPVFHARTKHVEVHYHFIREKVLKEEVELNQIKSE 1263


>tr|A9S171|A9S171_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_9359 PE=4 SV=1
          Length = 55

 Score = 39.3 bits (90), Expect = 0.20
 Identities = 18/38 (47%), Positives = 29/38 (76%), Gaps = 2/38 (5%)
 Frame = -2

Query: 344 NQSCIPIAQNLVFHARFKHIQIQ--FVGRKILDSTVDL 237
           NQSCI + +NL+FHA  +H+QIQ  FV +KI ++ +++
Sbjct: 1   NQSCIFLLKNLIFHACIEHVQIQYYFVCKKIKNNEINI 38


>tr|A5B1S5|A5B1S5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007050 PE=4 SV=1
          Length = 223

 Score = 39.3 bits (90), Expect = 0.20
 Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
 Frame = -2

Query: 347 NNQSCIPIAQNLVFHARFKHIQI--QFVGRKILDSTVDLVTTRSKH 216
           +NQ+ I IA+NLV H R KH++I  +F+  K+   TV L    +KH
Sbjct: 147 DNQAAISIAKNLVHHDRTKHVEIDRRFITEKVTSETVKLNYVPTKH 192


>tr|Q4W6T6|Q4W6T6_PETHY Polypepetide with reverse transcriptase and
           RNaseH domains OS=Petunia hybrida PE=4 SV=1
          Length = 389

 Score = 38.9 bits (89), Expect = 0.26
 Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
 Frame = -2

Query: 347 NNQSCIPIAQNLVFHARFKHIQI--QFVGRKILDSTVDL 237
           +NQS I IA+N VFH R KHI++   FV  K+LD  + L
Sbjct: 310 DNQSAIHIAKNPVFHERTKHIELDCHFVREKLLDGLISL 348


>tr|A5BJX0|A5BJX0_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_003097 PE=4 SV=1
          Length = 1052

 Score = 38.9 bits (89), Expect = 0.26
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
 Frame = -2

Query: 362  VPNEENNQSCIPIAQNLVFHARFKHIQI--QFVGRKILDSTVDLVTTRS 222
            VP   +NQ  + +A+N VFHAR KH+++   F+  K+L+  V+L   +S
Sbjct: 966  VPLYCDNQLAVHLAENPVFHARTKHVEVHYHFIREKVLEEEVELKQIKS 1014


>tr|A5AH18|A5AH18_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043495 PE=4 SV=1
          Length = 567

 Score = 38.5 bits (88), Expect = 0.33
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -2

Query: 347 NNQSCIPIAQNLVFHARFKHIQIQ--FVGRKILDSTVDLVTTRSKHPFLP 204
           +N+S I IA+N +FH+R +HI ++  F+   ILD  V L+     +P  P
Sbjct: 467 DNKSAIVIAKNYIFHSRTRHIVVKYHFIKGAILDGVVQLIMMHDGYPKRP 516


>tr|Q6BCY1|Q6BCY1_IPOBA Gag-Pol OS=Ipomoea batatas GN=Rtsp-1AA PE=4
            SV=1
          Length = 1298

 Score = 37.7 bits (86), Expect = 0.57
 Identities = 17/39 (43%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
 Frame = -2

Query: 347  NNQSCIPIAQNLVFHARFKHIQIQ--FVGRKILDSTVDL 237
            ++QS + +A+N  FH+R KHI++Q  F+  K+ + TVDL
Sbjct: 1226 DSQSALHLARNPAFHSRTKHIRVQYHFIREKVKEGTVDL 1264