DK957269 |
Clone id |
TST39A01NGRL0027_O20 |
Library |
TST39 |
Length |
612 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_O20. 5' end sequence. |
Accession |
DK957269 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
- |
Sequence |
TGTCTCCATGTTGTTTGTCGAGTTTAACCAACATGCACAATGCCTCGTTGTTTTACCATG CCATCGTGAGTCTTGCAAAACCCCCTAAACCCTGGTAACGCCCACAGAGCCATCGCCTGC AAAATGATGTCTGTTTGCCGCGCTCTGCGGCAAAGGAACGGGAGTTTCCCCCCCTCAATT GCAACTTTGCTAAATGCGCACACCACAGAGTCCGAGTCCGCCTCTCGCAGCAGCTACCCA AGGATTGATGCATCCTTTCACACATCCTATGGTTTTCGAGCTGAGATACGACATCACCTC ACGTGGTCACACTTGCGCGGATGTGGGCACAACCCTTGTGCTTCAGGTTTGCGGGCTATG CATTGGATCGCCTCCACCAACTATCATCAATTGGGTTACAATAGAGACAATGGAACGAGT TTCAAGGACTGCAAACTGTTAGCAGCTAGAGGAGAGCGCCCTAGATTCTTTACTAGTGGA TTGGTAACTATGACATTGATAGCAGCTAACGTGGCAGTGTCCACGATGTGGTGGAAAATG AATCCTCGGTTCATGGACACACATTTTATGGTATCTTATGAGAGTTTCATCCATGGCCGT TTACACACTCTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q54QP6 |
Definition |
sp|Q54QP6|OSB8_DICDI Oxysterol-binding protein 8 OS=Dictyostelium discoideum |
Align length |
53 |
Score (bit) |
32.7 |
E-value |
1.5 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6TZE0 |
Definition |
tr|B6TZE0|B6TZE0_MAIZE Putative uncharacterized protein OS=Zea mays |
Align length |
123 |
Score (bit) |
49.7 |
E-value |
0.0001 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957269|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0027_O20, 5' (612 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B6TZE0|B6TZE0_MAIZE Putative uncharacterized protein OS=Zea m... 50 1e-04 tr|Q5JMG2|Q5JMG2_ORYSJ Rhomboid family protein-like (Os01g076310... 47 0.001 tr|B8A9U6|B8A9U6_ORYSI Putative uncharacterized protein OS=Oryza... 46 0.002 tr|A7QHZ3|A7QHZ3_VITVI Chromosome chr17 scaffold_101, whole geno... 44 0.006 tr|Q9FZ81|Q9FZ81_ARATH F25I16.6 protein (Putative uncharacterize... 44 0.007 tr|A9RJ33|A9RJ33_PHYPA Predicted protein (Fragment) OS=Physcomit... 38 0.41 tr|B4FS22|B4FS22_MAIZE Putative uncharacterized protein OS=Zea m... 37 1.2 tr|A9V3A3|A9V3A3_MONBE Predicted protein OS=Monosiga brevicollis... 36 1.6 tr|Q84WG3|Q84WG3_ARATH Putative uncharacterized protein At1g7413... 36 2.0 tr|Q3ECD4|Q3ECD4_ARATH Uncharacterized protein At1g74130.2 OS=Ar... 36 2.0 tr|Q01CN6|Q01CN6_OSTTA Integral membrane protease of the rhomboi... 35 2.7 tr|Q1DNS3|Q1DNS3_COCIM Predicted protein OS=Coccidioides immitis... 35 3.4 tr|A2CE77|A2CE77_DANRE Novel protein similar to vertebrate RAS p... 35 4.5 tr|Q4QAT8|Q4QAT8_LEIMA Putative uncharacterized protein OS=Leish... 34 5.8 tr|Q7M146|Q7M146_9GAMM NifB protein OS=Azotobacter chroococcum P... 34 5.9 tr|Q9C6A2|Q9C6A2_ARATH Putative uncharacterized protein F9E11.2 ... 34 5.9
>tr|B6TZE0|B6TZE0_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 328
Score = 49.7 bits (117), Expect = 1e-04 Identities = 37/123 (30%), Positives = 52/123 (42%), Gaps = 17/123 (13%) Frame = +1
Query: 295 HLTWSHLRGC-GHNP---------CASGLRAMHWIASTN-------YHQLGYNRDNGTSF 423 HL W+ L G G +P A+ A W+A+ + + R +G F Sbjct: 53 HLIWNRLSGSTGISPLPRTAADVAAAARTAASRWLATARGARSLDLFSLPRWRRASGRQF 112
Query: 424 KDCKLLAARGERPRFFTSGLVTMTLIAANVAVSTMWWKMNPRFMDTHFMVSYESFIHGRL 603 L ++ LI ANVAV +W +P FM HFM+S ++F GRL Sbjct: 113 SPSPFLQGATWASWMESADGAVWMLIGANVAVFLLWRVADPGFMRKHFMISLDNFKSGRL 172
Query: 604 HTL 612 HTL Sbjct: 173 HTL 175
>tr|Q5JMG2|Q5JMG2_ORYSJ Rhomboid family protein-like (Os01g0763100 protein) OS=Oryza sativa subsp. japonica GN=P0512C01.43 PE=4 SV=1 Length = 308
Score = 46.6 bits (109), Expect = 0.001 Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 2/62 (3%) Frame = +1
Query: 433 KLLAARGERPRFFTS--GLVTMTLIAANVAVSTMWWKMNPRFMDTHFMVSYESFIHGRLH 606 +L + + R ++ S G V M L+ ANV V +W +P FM HFM+S ++F GRLH Sbjct: 94 ELFSLQRRRTKWLPSADGAVLM-LVGANVGVFMLWHLADPSFMRRHFMISLDNFKSGRLH 152
Query: 607 TL 612 TL Sbjct: 153 TL 154
>tr|B8A9U6|B8A9U6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_03840 PE=4 SV=1 Length = 327
Score = 46.2 bits (108), Expect = 0.002 Identities = 20/41 (48%), Positives = 27/41 (65%) Frame = +1
Query: 490 MTLIAANVAVSTMWWKMNPRFMDTHFMVSYESFIHGRLHTL 612 + L+ ANV V +W +P FM HFM+S ++F GRLHTL Sbjct: 130 LMLVGANVGVFMLWHLADPSFMRRHFMISLDNFKSGRLHTL 170
>tr|A7QHZ3|A7QHZ3_VITVI Chromosome chr17 scaffold_101, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00000029001 PE=4 SV=1 Length = 333
Score = 44.3 bits (103), Expect = 0.006 Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 4/58 (6%) Frame = +1
Query: 451 GERPRFFTSGL----VTMTLIAANVAVSTMWWKMNPRFMDTHFMVSYESFIHGRLHTL 612 G R R + SGL V + LI ANVAV +W + RFM +F +S ++F GR+HTL Sbjct: 121 GRRWRSWLSGLSTNDVVLGLIIANVAVFMLWRISDHRFMLNNFTISLDNFKSGRIHTL 178
>tr|Q9FZ81|Q9FZ81_ARATH F25I16.6 protein (Putative uncharacterized protein) (Putative uncharacterized protein At1g18600) (Putative uncharacterized protein F25I16.6) OS=Arabidopsis thaliana GN=At1g18600 PE=2 SV=1 Length = 336
Score = 43.9 bits (102), Expect = 0.007 Identities = 20/43 (46%), Positives = 27/43 (62%) Frame = +1
Query: 484 VTMTLIAANVAVSTMWWKMNPRFMDTHFMVSYESFIHGRLHTL 612 V + L+ AN V MW N +FM +FM+S ++F GRLHTL Sbjct: 135 VVLGLVIANAGVFVMWRVFNQQFMMNNFMISLDNFKSGRLHTL 177
>tr|A9RJ33|A9RJ33_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_53495 PE=4 SV=1 Length = 167
Score = 38.1 bits (87), Expect = 0.41 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = +1
Query: 496 LIAANVAVSTMWWKMNPRFMDTHFMVSYESFIHGRLHTL 612 L+ N+AV +W + +FM +FMVS S + GR+HT+ Sbjct: 1 LVGVNLAVFGLWQFADRKFMTNNFMVSVNSVLSGRIHTI 39
>tr|B4FS22|B4FS22_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 127
Score = 36.6 bits (83), Expect = 1.2 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Frame = -1
Query: 597 AMDETLIRYHKMCVHEPRIHFPPHRG-HCHVSCYQCHSYQSTSKESRALSSS 445 A D +++HKMC P+ H PPHR H C +C + + ++ A S S Sbjct: 19 AADFAFLKHHKMCALPPQPHLPPHRARHDREVCARCPTPSAPIHKTLATSIS 70
>tr|A9V3A3|A9V3A3_MONBE Predicted protein OS=Monosiga brevicollis GN=33060 PE=4 SV=1 Length = 310
Score = 36.2 bits (82), Expect = 1.6 Identities = 17/42 (40%), Positives = 24/42 (57%) Frame = +1
Query: 487 TMTLIAANVAVSTMWWKMNPRFMDTHFMVSYESFIHGRLHTL 612 T TLI N AV ++W P +M HF S +++ GR +TL Sbjct: 68 TYTLIGINTAVFSLWHLQPPHWMIQHFATSEQNWSEGRWYTL 109
>tr|Q84WG3|Q84WG3_ARATH Putative uncharacterized protein At1g74130 OS=Arabidopsis thaliana GN=At1g74130 PE=2 SV=1 Length = 322
Score = 35.8 bits (81), Expect = 2.0 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Frame = +1
Query: 484 VTMTLIAANVAVSTMWWKMNP--RFMDTHFMVSYESFIHGRLHTL 612 V L+ AN AV TMW + +M +FM+S SF+ GR+HTL Sbjct: 117 VVFGLVIANAAVFTMWRVLGKDNMWMVKNFMLSRYSFMTGRIHTL 161
>tr|Q3ECD4|Q3ECD4_ARATH Uncharacterized protein At1g74130.2 OS=Arabidopsis thaliana GN=At1g74130 PE=4 SV=1 Length = 296
Score = 35.8 bits (81), Expect = 2.0 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%) Frame = +1
Query: 484 VTMTLIAANVAVSTMWWKMNP--RFMDTHFMVSYESFIHGRLHTL 612 V L+ AN AV TMW + +M +FM+S SF+ GR+HTL Sbjct: 117 VVFGLVIANAAVFTMWRVLGKDNMWMVKNFMLSRYSFMTGRIHTL 161
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