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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957075
Clone id TST39A01NGRL0027_G16
Library
Length 570
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_G16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GAGAGAGCGAGAGAGAAAGAGGGTTTTCTTCTTCCCGCTTCTCCACATACACTCACTCCC
CCTCCCAGCGCGTGGCGGCCGCTTCTGCTCCTGAAGTCTGCAGCTTCCGGCTCCATTTTC
GAGCTCGCCATTGTTCCTGTACCTTGCCCCTCTACAGAAATTCGGCTTATTGCGGCTTCC
ATGGCTCTGGCTGAAGTGGTGGCCGCGGCGCCTGACTCGGCTCACCATACAGGTGATCCG
GTTCGGACTATGGGTGGTGGTTTCAAAGGGGACCTACCTCAGGAACATGTTTCCGACGAC
AAGAATGGGGATGCTACTCAGTTTAAAAGATTAGATGGAGCAGCTGAAGCGGCCAATGCT
GGCTATAGTATACCTGTCTTGGCAAGCTATGATGGAGGTGTGGGATGTGATACAAGACAC
GTATTCTCTGGCATGCTTGCTGAGAATGGGCAGTCTATGTACTATGCCCCTGGTTATGAG
TTTCCACAGCAATCTCCTTATTGCTCACAGCCTCAAGGGGGCTTACATGTCAAATATGGG
ATCTGGAACAACGGGGGTACTGTGGACCGC
■■Homology search results ■■ -
sp_hit_id Q68749
Definition sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus genotype 2c (isolate BEBE1)
Align length 109
Score (bit) 33.5
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957075|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_G16, 5'
         (570 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus gen...    33   0.77 
sp|Q8AZM0|POLS_BSNV Structural polyprotein OS=Blotched snakehead...    31   3.8  
sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subs...    31   3.8  
sp|Q64347|CLCN1_MOUSE Chloride channel protein, skeletal muscle ...    31   3.8  
sp|Q54KT2|Y8896_DICDI Putative uncharacterized protein DDB_G0287...    31   4.9  
sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1...    31   4.9  
sp|Q6ZU45|YA021_HUMAN Putative C-type lectin domain-containing p...    30   6.5  
sp|Q6GMB0|DCC1_XENLA Sister chromatid cohesion protein DCC1 OS=X...    30   6.5  
sp|Q8BYG0|TTC24_MOUSE Tetratricopeptide repeat protein 24 OS=Mus...    30   8.4  
sp|Q4WXZ5|RNY1_ASPFU Ribonuclease T2-like OS=Aspergillus fumigat...    30   8.5  
sp|P35523|CLCN1_HUMAN Chloride channel protein, skeletal muscle ...    30   8.5  

>sp|Q68749|POLG_HCVBB Genome polyprotein OS=Hepatitis C virus genotype
            2c (isolate BEBE1) PE=3 SV=3
          Length = 3037

 Score = 33.5 bits (75), Expect = 0.77
 Identities = 28/109 (25%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
 Frame = +1

Query: 22   GFLLPASPHTLTPPPSAWRPLLLLKSAASGSIFELAIVPVPCPSTEIRLIXXXXXXXXXX 201
            G  LP    T  PPP   R ++L +S    ++ ELAI    CP                 
Sbjct: 2317 GCALPPPGTTPVPPPRRRRAVVLDQSNVGEALKELAIKSFGCPPP--------------- 2361

Query: 202  XXXXXXXHHTGDPVRTMGGGFKGDL---PQEHVSDDKNGDATQFKRLDG 339
                     +GDP  + GGG  G+    P +   D + G  +    L+G
Sbjct: 2362 ---------SGDPGHSTGGGTTGETSKSPPDEPDDSEAGSVSSMPPLEG 2401


>sp|Q8AZM0|POLS_BSNV Structural polyprotein OS=Blotched snakehead
            virus PE=1 SV=1
          Length = 1069

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 21/54 (38%), Positives = 25/54 (46%)
 Frame = -3

Query: 232  LYGEPSQAPRPPLQPEPWKPQ*AEFL*RGKVQEQWRARKWSRKLQTSGAEAAAT 71
            +YG P+QAP PP   E       E   RG  Q Q R  +       SG+ AAAT
Sbjct: 983  IYGSPNQAPAPPEFVEEVAAVLMENNGRGPNQAQMRELRLKALTMKSGSGAAAT 1036


>sp|Q7XWS7|FH12_ORYSJ Formin-like protein 12 OS=Oryza sativa subsp.
            japonica GN=FH12 PE=3 SV=3
          Length = 1669

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 259  HHP*SEPDHLYGEPSQAPRPPLQPEP 182
            HHP   P +L GE   AP PP  P P
Sbjct: 1043 HHPPERPHYLPGEVGGAPSPPSPPPP 1068


>sp|Q64347|CLCN1_MOUSE Chloride channel protein, skeletal muscle
            OS=Mus musculus GN=Clcn1 PE=2 SV=2
          Length = 994

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 19/52 (36%), Positives = 26/52 (50%)
 Frame = +1

Query: 7    AREKEGFLLPASPHTLTPPPSAWRPLLLLKSAASGSIFELAIVPVPCPSTEI 162
            A E+E  ++P  P T  PPPS   P  L  + A G + EL +V    P  E+
Sbjct: 922  APERE-VMVPTMPETPVPPPSPEAPSCLAPARAEGELEELEMVGSLEPEEEL 972


>sp|Q54KT2|Y8896_DICDI Putative uncharacterized protein DDB_G0287191
           OS=Dictyostelium discoideum GN=DDB_G0287191 PE=4 SV=1
          Length = 72

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 23/83 (27%), Positives = 30/83 (36%)
 Frame = -3

Query: 421 RVLYHIPHLHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SE 242
           R+ YH  + HHS P   ++  +              H HS    H        +HH  S 
Sbjct: 4   RLNYHHHNYHHSYPHHHHHHNY--------------HYHSYPHHH--------HHH--SH 39

Query: 241 PDHLYGEPSQAPRPPLQPEPWKP 173
             H +  PS  P PP  P P  P
Sbjct: 40  HHHHHHLPSSPPSPPSPPSPPSP 62


>sp|Q6UXD1|HRCT1_HUMAN Histidine-rich carboxyl terminus protein 1
           OS=Homo sapiens GN=HRCT1 PE=2 SV=1
          Length = 115

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = -3

Query: 376 QVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLY 227
           +V  +Q WP +    +     H H     HVP VG   +HHP   P HL+
Sbjct: 52  RVRRAQPWPFRRRGHLGIFHHHRHPGHVSHVPNVGLHHHHHPRHTPHHLH 101


>sp|Q6ZU45|YA021_HUMAN Putative C-type lectin domain-containing
           protein FLJ44005 OS=Homo sapiens PE=2 SV=1
          Length = 233

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -1

Query: 138 RNNG--ELENGAGSCRLQEQKRPPRAGRGSECMWRSGK 31
           RN G  ELE  AGS R +EQ  P   GR     W SG+
Sbjct: 7   RNRGLRELEEVAGSSRTREQLVPRLGGRAGYDWWASGE 44


>sp|Q6GMB0|DCC1_XENLA Sister chromatid cohesion protein DCC1
           OS=Xenopus laevis GN=dscc1 PE=2 SV=1
          Length = 390

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = +1

Query: 292 SDDKNGDATQFKRLDGAAEAANAGYSIPVLASY-DGGVGCDTRHVFSGMLAENGQSMYYA 468
           S+  +GD +  +  D   +   AG S+ +     D  V C     +   +A+    + + 
Sbjct: 33  SEFTSGDYSLMELDDTLCKQIEAGDSLVIRGDKSDHAVLCSQDKTYDLKIADTSNLLLFI 92

Query: 469 PGYEFPQQSPYCSQPQGGLHVKYGIWNN 552
           PG + P Q P   QP   +H +   ++N
Sbjct: 93  PGCKLPDQLPADQQPLSVIHCEIAGFSN 120


>sp|Q8BYG0|TTC24_MOUSE Tetratricopeptide repeat protein 24 OS=Mus
           musculus GN=Ttc24 PE=2 SV=1
          Length = 334

 Score = 30.0 bits (66), Expect = 8.4
 Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = -3

Query: 307 HSCRRKHVPEVGPL*NHHP*SEPDHLYGEPSQAPRPPLQPEPWKPQ*AEFL*R--GKVQE 134
           H    K+  E   L  H P S  + L  + + A R  +  E  K   A FL    GK+Q 
Sbjct: 168 HDQALKYYKEALALCQHEPSSVRERLVAKLADAMRTFVAQE--KIAQARFLPSAPGKLQT 225

Query: 133 QWRARKWSRKLQTSGAEAAATRWEGE 56
             +A K S ++Q+S  +A  ++WEGE
Sbjct: 226 SRKA-KTSARVQSSAEDAQESQWEGE 250


>sp|Q4WXZ5|RNY1_ASPFU Ribonuclease T2-like OS=Aspergillus fumigatus
           GN=rny1 PE=3 SV=2
          Length = 408

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 415 RHVFSGMLAENGQSMYYAPGYEFPQQSPYCSQPQGGLHVKY 537
           +H+   +    G S  + P +E  Q S  CS+P+   H +Y
Sbjct: 9   QHILKALTGSLGLSTIFEPDHEASQNSFQCSKPELSCHAQY 49
tr_hit_id B4N2C7
Definition tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni
Align length 115
Score (bit) 38.5
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957075|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_G16, 5'
         (570 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni GN=GK161...    39   0.26 
tr|B4LKR2|B4LKR2_DROVI GJ20116 OS=Drosophila virilis GN=GJ20116 ...    37   0.77 
tr|B4KYB6|B4KYB6_DROMO GI12500 OS=Drosophila mojavensis GN=GI125...    36   1.3  
tr|B4J7V6|B4J7V6_DROGR GH20604 OS=Drosophila grimshawi GN=GH2060...    36   1.3  
tr|B4KQW7|B4KQW7_DROMO GI20446 OS=Drosophila mojavensis GN=GI204...    36   1.7  
tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein OS=Plesi...    35   3.8  
tr|A1ALZ0|A1ALZ0_PELPD Glutamate synthase (Ferredoxin) OS=Peloba...    35   3.9  
tr|A6N3K6|A6N3K6_9PLAN Polysulfide reductase subunit C (Fragment...    34   5.0  
tr|B4N5E4|B4N5E4_DROWI GK20557 OS=Drosophila willistoni GN=GK205...    34   5.0  
tr|A3Z252|A3Z252_9SYNE Deoxyribodipyrimidine photolyase OS=Synec...    34   5.0  
tr|A9U768|A9U768_PHYPA Predicted protein (Fragment) OS=Physcomit...    34   5.0  
tr|Q2BC21|Q2BC21_9BACI Helicase, SWF/SNF family protein OS=Bacil...    34   6.6  
tr|A1CP48|A1CP48_ASPCL Putative uncharacterized protein OS=Asper...    34   6.6  
tr|A7S4H3|A7S4H3_NEMVE Predicted protein OS=Nematostella vectens...    33   8.6  

>tr|B4N2C7|B4N2C7_DROWI GK16142 OS=Drosophila willistoni GN=GK16142
           PE=4 SV=1
          Length = 809

 Score = 38.5 bits (88), Expect = 0.26
 Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 7/115 (6%)
 Frame = -3

Query: 505 SNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHHS-----LPRQVYYSQHWPLQL 341
           +N  + V+ H Q H+T   H   A       +H+ H HH+      P   ++  H    +
Sbjct: 170 TNSAVNVKPHTQFHNTLAHHMTVAHHAAAAAHHV-HAHHAPHPHPHPHHSHHHHHHHAAM 228

Query: 340 LHLIF*T--E*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEPSQAPRPPLQPEP 182
            H +       HPH+    HVP VG   +    + P      P   P P L P+P
Sbjct: 229 AHHLLANGFHPHPHALALAHVPVVGGQQSTAAVAPP-----APPTLPPPTLMPQP 278


>tr|B4LKR2|B4LKR2_DROVI GJ20116 OS=Drosophila virilis GN=GJ20116
           PE=4 SV=1
          Length = 793

 Score = 37.0 bits (84), Expect = 0.77
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = -3

Query: 397 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 218
           L H  P    Y ++ P    H +   E  P      H P   P+   HP + P HL+G P
Sbjct: 210 LDHRRPPIDPYDRYGPPIHPHAVHPREYRPMHHEYPHPPRGPPMHRGHPHAHPHHLHGHP 269

Query: 217 ---SQAPRPPLQPEPWKP 173
                AP  P+ P P  P
Sbjct: 270 PPHQYAPMRPMAPRPHVP 287


>tr|B4KYB6|B4KYB6_DROMO GI12500 OS=Drosophila mojavensis GN=GI12500
           PE=4 SV=1
          Length = 788

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 19/65 (29%), Positives = 27/65 (41%)
 Frame = -3

Query: 526 VSPLEAVSNKEIAVETHNQGHST*TAHSQQACQRIRVLYHIPHLHHSLPRQVYYSQHWPL 347
           +SP+E  + K+   +     H     H QQ  Q  +  YH    H     Q +Y QH+  
Sbjct: 301 LSPMEIKTEKQQRQQQQQHQHQQQQQHQQQQQQHQQQQYHQQQQHQQQQHQQHYQQHYQQ 360

Query: 346 QLLHL 332
           Q  HL
Sbjct: 361 QQQHL 365


>tr|B4J7V6|B4J7V6_DROGR GH20604 OS=Drosophila grimshawi GN=GH20604
           PE=4 SV=1
          Length = 793

 Score = 36.2 bits (82), Expect = 1.3
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 3/78 (3%)
 Frame = -3

Query: 397 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 218
           L H  P    Y ++ P    H     E  P      H P   P+   HP + P HL+G P
Sbjct: 210 LDHRRPPVDPYDRYGPPLHPHAAHPREYRPMHHEYPHPPRGPPMHRGHPHTHPHHLHGHP 269

Query: 217 ---SQAPRPPLQPEPWKP 173
                AP  P+ P P  P
Sbjct: 270 PPHQYAPMRPMAPRPHVP 287


>tr|B4KQW7|B4KQW7_DROMO GI20446 OS=Drosophila mojavensis GN=GI20446
           PE=4 SV=1
          Length = 791

 Score = 35.8 bits (81), Expect = 1.7
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = -3

Query: 397 LHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHVPEVGPL*NHHP*SEPDHLYGEP 218
           L H  P    Y ++ P    H +   E  P      H P   P+   HP + P H++G P
Sbjct: 210 LDHRRPPIDPYDRYGPPIHPHSVHPREYRPMHHEYPHPPRGPPIHRGHPHAHPHHMHGHP 269

Query: 217 ---SQAPRPPLQPEPWKP 173
                AP  P+ P P  P
Sbjct: 270 PPHQYAPMRPMAPRPHVP 287


>tr|A6G5F2|A6G5F2_9DELT Putative uncharacterized protein
           OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_03463 PE=4 SV=1
          Length = 480

 Score = 34.7 bits (78), Expect = 3.8
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 226 GEPSQAPRPPLQPEPWKP 173
           G+P+ AP PP +PEPW+P
Sbjct: 154 GDPADAPEPPPEPEPWEP 171


>tr|A1ALZ0|A1ALZ0_PELPD Glutamate synthase (Ferredoxin) OS=Pelobacter
            propionicus (strain DSM 2379) GN=Ppro_0729 PE=4 SV=1
          Length = 1507

 Score = 34.7 bits (78), Expect = 3.9
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +1

Query: 352  ANAGYSIPVLASYDGGVGCDTRHV--FSGMLAENGQSMYYAPGYEFPQQSPYCSQPQGGL 525
            A AG  I  ++ YDGG G   +H   F G+ AE G             +  +C+  Q G+
Sbjct: 1010 AKAGADIITISGYDGGTGAARKHAIKFVGLPAEIG------------VREAHCALVQAGM 1057

Query: 526  HVKYGIWNNGG 558
              +  +W +GG
Sbjct: 1058 RDRVELWADGG 1068


>tr|A6N3K6|A6N3K6_9PLAN Polysulfide reductase subunit C (Fragment)
           OS=planctomycete Zi62 GN=psrC PE=4 SV=1
          Length = 308

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 14/112 (12%)
 Frame = +2

Query: 248 LWVVVSKGTYLRNMFPTTRMGMLLSLKD*MEQLKRPMLAIVY----LSWQAMMEVWDVIQ 415
           LW V +  TY          GM+  L    ++ K P+L IVY    L W      W   +
Sbjct: 85  LWDVFAVSTYATVSVIFWYTGMIPDLATLRDRTKNPILRIVYSVLSLGWTGSARKWSRYE 144

Query: 416 DTYSLACLLRMGSLCTMPLVMSF----------HSNLLIAHSLKGAYMSNMG 541
             Y+L   L    + ++  ++SF          H+ +   + + GA  S  G
Sbjct: 145 KAYTLFAALAAPLVLSVHTIVSFDFAVSQLPGWHTTIFPPYFVAGAVFSGFG 196


>tr|B4N5E4|B4N5E4_DROWI GK20557 OS=Drosophila willistoni GN=GK20557
           PE=4 SV=1
          Length = 880

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 26/76 (34%), Positives = 29/76 (38%), Gaps = 2/76 (2%)
 Frame = -3

Query: 403 PHLHHSLPRQVYYSQHWPLQLLHLIF*TE*HPHSCRRKHV-PEVGPL*NHHP*SEPDHLY 227
           PHLH   P   Y  QH P    H       HPH+    H  P   P  + HP + P H  
Sbjct: 742 PHLHQGHPHFAYQPQHHPHFYPHQ------HPHAHAHAHAHPHPHPHPHPHPHAHPPH-P 794

Query: 226 GEPSQAPRPPLQ-PEP 182
             P Q   P  Q P P
Sbjct: 795 SHPHQQQHPHQQHPHP 810


>tr|A3Z252|A3Z252_9SYNE Deoxyribodipyrimidine photolyase
           OS=Synechococcus sp. WH 5701 GN=WH5701_10699 PE=3 SV=1
          Length = 508

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 52  LTPPPSAWRPLLLLKSAASGSIFELAIVPVPCPSTEI 162
           + PPP A +PL  L   A  S  EL + P PCP  ++
Sbjct: 154 MVPPPEALQPLAGLDPGAIPSASELGLAPDPCPGRQV 190